Rorug06G0319900
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001951
Physical Location & Seq
Reverse (-)
47170978 .. 47173192
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0319900.1

Sequence Viewer

Length: 405 bp
ATGAACAATTGGTGGGACCGTGGGAGTTCTCTTGCAAGCAAATTAAATGTTGTCAAACGGGTGTCTTCAGTTGTTTGCCCAGCAAGCATTTCAGCTGGAGCAGAGGTAGTGGAGCCTCATCTGTCTTTCAAAGAGGTTTCAAATCCACAGAAGCAGAATCTGTTTATCAGTAAGTTGAACGTTTGCTGCGAGATCATTGATTCTATCGATCCAGCTAAACGGCAAGATCTTAAGCGTGAAACATTGATTGAGCTGCAGGTCGCACCATATAAGGGAAGGAAGGGTGAGTCAAATTGGGGTCTTAACACATCTAGAGAATTACAAGTACTCAATCGTATATGGAATCTTGAAGAACAGCATGCATCTAATATATCATTGGTAAAAGCACTGAGCGGATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

8.86

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 42 - 85 1.8e-06 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccBSI CCGCTC 1 cut(s) 393
AciI CCGC 1 cut(s) 393
AclI AACGTT 1 cut(s) 180
AclWI GGATC 2 cut(s) 203, 403
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 130, 141, 178, 350
AluBI AGCT 3 cut(s) 95, 215, 253
AluI AGCT 3 cut(s) 95, 215, 253
AlwI GGATC 2 cut(s) 203, 403
AlwNI CAGNNNCTG 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 186, 253
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 173, 240
BceAI ACGGC 1 cut(s) 236
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 254
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 247
BglII AGATCT 1 cut(s) 226
BisI GCNGC 2 cut(s) 187, 254
BlsI GCNGC 2 cut(s) 188, 255
BmcAI AGTACT 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 17, 114
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 380
BseXI GCAGC 2 cut(s) 173, 240
BseYI CCCAGC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 207
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 192, 208, 226, 395
BspACI CCGC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 17, 114
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 2 cut(s) 203, 403
BspTI CTTAAG 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 4 cut(s) 192, 208, 226, 395
Bst4CI ACNGT 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 37, 85, 360
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 19
BstKTI GATC 4 cut(s) 195, 211, 229, 398
BstMBI GATC 4 cut(s) 192, 208, 226, 395
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 173, 240
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 386
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 3 cut(s) 37, 85, 360
CaiI CAGNNNCTG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 326
CviAII CATG 1 cut(s) 359
CviJI RGCY 4 cut(s) 95, 115, 215, 253
CviKI_1 RGCY 4 cut(s) 95, 115, 215, 253
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 389
DpnI GATC 4 cut(s) 194, 210, 228, 397
DpnII GATC 4 cut(s) 192, 208, 226, 395
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 268, 270, 338, 340, 360, 371
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 187, 254
Fsp4HI GCNGC 2 cut(s) 187, 254
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 187, 254
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 117
Hin1II CATG 1 cut(s) 362
HinfI GANTC 4 cut(s) 157, 200, 287, 343
HphI GGTGA 1 cut(s) 296
Hpy188III TCNNGA 2 cut(s) 312, 347
HpyAV CCTTC 2 cut(s) 270, 274
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 35, 256, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 4 cut(s) 192, 208, 226, 395
LmnI GCTCC 2 cut(s) 98, 112
LpnPI CCDG 4 cut(s) 81, 93, 225, 242
Lsp1109I GCAGC 2 cut(s) 173, 240
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 180
MalI GATC 4 cut(s) 194, 210, 228, 397
MbiI CCGCTC 1 cut(s) 393
MboI GATC 4 cut(s) 192, 208, 226, 395
MboII GAAGA 2 cut(s) 57, 362
MfeI CAATTG 1 cut(s) 7
MflI RGATCY 1 cut(s) 226
MluCI AATT 4 cut(s) 7, 41, 292, 317
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 3 cut(s) 97, 126, 127
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 3 cut(s) 44, 231, 303
MspA1I CMGCKG 1 cut(s) 95
MspCI CTTAAG 1 cut(s) 230
MunI CAATTG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 4 cut(s) 192, 208, 226, 395
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 17, 114
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 3 cut(s) 157, 200, 343
PkrI GCNGC 2 cut(s) 188, 255
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp1406I AACGTT 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 17, 114
PspPI GGNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SaqAI TTAA 3 cut(s) 44, 231, 303
SatI GCNGC 2 cut(s) 187, 254
Sau3AI GATC 4 cut(s) 192, 208, 226, 395
Sau96I GGNCC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 1 cut(s) 296
SetI ASST 7 cut(s) 97, 108, 138, 183, 217, 255, 261
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 362
Sse9I AATT 4 cut(s) 7, 41, 292, 317
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 7, 41, 292, 317
TatI WGTACW 1 cut(s) 325
TfiI GAWTC 3 cut(s) 157, 200, 343
Tru1I TTAA 3 cut(s) 44, 231, 303
Tru9I TTAA 3 cut(s) 44, 231, 303
TscAI CASTG 1 cut(s) 393
TseI GCWGC 2 cut(s) 186, 253
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.