Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Forward (+)

63032141 .. 63032776

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCACATAGAACTACAATCATTGTTGCTCACCGGCTTTCCACTATCCGCGATGTGGATACAATCATTGTGCTGAAGAATGGTCAGGTTGTTGAGAGTGGCAACCATGCAGAACTGATGTGTAAGAAAGGTGAGTATGCAAGTATGGATGTTAAGTCAATCACAACAAGAAAGCAGGATCCAAATGATCAAAAGCTGTCTCAACCTAACTTTTCTCCCAGTCAATCAATATGGGAAGTAGTAAAACTAAATGCACCTGAGTGGCCTTACGCGATACTCGATTCAGTTGGTGCAGCTCTGGAAGGAACGGAAGCCCCTTTCTTTGCCCTTGCAATAACTCACATCTTGTCTACATTTTATTCTCCAACTGGTTCTGAAATCAAACACGAAGTTGACAAGGTAACTCTCACGTTTGTTGCACTAGCCGGTGTTACTGTTCCAGTATATCCGTTGCAGCACTACTTCTACACATTGATGGGGGAGCGGCTCACAAGTCATGTGCGCCTATTAATGTTCTCAGGTTCTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

177

Amino Acids

19.71

Weight (kDa)

6.37

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	2 cut(s)	51, 272
AciI	CCGC	2 cut(s)	49, 484
AclWI	GGATC	2 cut(s)	173, 186
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	196, 296
AluI	AGCT	2 cut(s)	196, 296
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	173, 186
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	293, 454
AseI	ATTAAT	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	23, 143
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	305, 466
BccI	CCATC	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	294, 455, 485
BlsI	GCNGC	3 cut(s)	295, 456, 486
BmiI	GGNNCC	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	2 cut(s)	33, 425
Bse1I	ACTGG	3 cut(s)	219, 373, 440
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	249, 531
BseNI	ACTGG	3 cut(s)	219, 373, 440
BseXI	GCAGC	2 cut(s)	305, 466
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	51, 272
BshFI	GGCC	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	34, 426
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	178, 187
BspACI	CCGC	2 cut(s)	49, 484
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	2 cut(s)	250, 530
BspFNI	CGCG	2 cut(s)	51, 272
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BsrBI	CCGCTC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	33, 425
BsrI	ACTGG	3 cut(s)	219, 373, 440
BssAI	RCCGGY	2 cut(s)	33, 425
BssMI	GATC	2 cut(s)	178, 187
Bst4CI	ACNGT	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	258, 517
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	2 cut(s)	51, 272
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	2 cut(s)	181, 190
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	2 cut(s)	178, 187
BstUI	CGCG	2 cut(s)	51, 272
BstV1I	GCAGC	2 cut(s)	305, 466
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	2 cut(s)	33, 425
CviAII	CATG	2 cut(s)	107, 497
CviJI	RGCY	7 cut(s)	37, 196, 265, 296, 314, 425, 487
CviKI_1	RGCY	7 cut(s)	37, 196, 265, 296, 314, 425, 487
DdeI	CTNAG	2 cut(s)	258, 517
DpnI	GATC	2 cut(s)	180, 189
DpnII	GATC	2 cut(s)	178, 187
Eco57I	CTGAAG	1 cut(s)	95
FaeI	CATG	2 cut(s)	110, 500
FaiI	YATR	7 cut(s)	9, 108, 138, 146, 232, 445, 498
FatI	CATG	2 cut(s)	106, 496
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	294, 455, 485
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	294, 455, 485
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	3 cut(s)	294, 455, 485
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	2 cut(s)	34, 426
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	110, 500
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	34, 426
HphI	GGTGA	2 cut(s)	23, 143
Hpy166II	GTNNAC	2 cut(s)	351, 394
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	351, 394
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	7 cut(s)	110, 140, 254, 293, 332, 419, 454
HpyF3I	CTNAG	2 cut(s)	258, 517
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	110, 500
HspAI	GCGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	178, 187
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	2 cut(s)	305, 466
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	3, 400, 430
MalI	GATC	2 cut(s)	180, 189
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	2 cut(s)	178, 187
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	389
MseI	TTAA	2 cut(s)	153, 509
MslI	CAYNNNNRTG	2 cut(s)	259, 473
MspI	CCGG	2 cut(s)	34, 426
MvnI	CGCG	2 cut(s)	51, 272
NdeII	GATC	2 cut(s)	178, 187
NlaIII	CATG	2 cut(s)	110, 500
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	3
OliI	CACNNNNGTG	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	295, 456, 486
PshBI	ATTAAT	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	259, 473
SaqAI	TTAA	2 cut(s)	153, 509
SatI	GCNGC	3 cut(s)	294, 455, 485
Sau3AI	GATC	2 cut(s)	178, 187
SetI	ASST	9 cut(s)	90, 133, 198, 208, 259, 298, 402, 413, 523
SmiMI	CAYNNNNRTG	2 cut(s)	259, 473
SsiI	CCGC	2 cut(s)	49, 484
SspMI	CTAG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	279
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	153, 509
Tru9I	TTAA	2 cut(s)	153, 509
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	293, 454
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	2 cut(s)	323, 438
VspI	ATTAAT	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.