Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007252.1

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Forward (+)

9665 .. 11837

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007252.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

atgtcacatagaactacaatcattgttgctcacaggctttccactatccgcgatgtggatacaatcattgtgctgaaaaatggtcaggttgttcagagtggcagccactcagaactggtgtgtaagaaaggtgagtatgctagtctggtgagcttgcaggtattggaacatgacaaacgttctagctcactatctcagtctgtaagtgcaacaaatgcaagctttcgagaaagcaatgatagaaatcagcaggttgttaagtcaattacaacaagagagcaggagacaagtgatcaaaagctgtccaaaagaagttcttctcctagttcatcaatatgggaattagtaaaactaaatgcacaggagtggccttacaccatactcgggtcagttggtgcaattctggcaggaatggaagctcctctctttgcccttggactaattcacatcttggctgcattttatgctccaactagttccgaaatcaaacatgaggttaacaaggtaattctcatgtttgttgtactagcaggtattactgttccaatgtatctgttgcagcactactactacacattgatgggggagcggctcacaagtcgtgtgcgcctattaatgttctcagattcttttctgcttgccatttacttacttaacgtacttctacacattgatgggggagcggctcacaatttaattccacatagtagagcaaatctaagagatcatctcatttcaactgcagctatcctttcaaacgatgttgggtggtttgatttgaatgagaataacactggttcactgacatcctactactacacattgatgggggagcggctcacaactatcctttcaaacgatgttgggtggtttgatttgaatgagaataacactggttcactgacatcaatcctagctaccaatgcaacattagtccgaagcgctctagctgaccacctatcaacaattgtgcagaatgtatcactcgcagtaactgcatttgttattgccttcacattaagttggtgtatcgcagctgttgtggttgctaccctccccctacttattggagcttccattgctgagcaactgtttcttaagggatttggtggagactacaacagtgcttatgctaaagcaacttccctagctcgtgaagcaattgccaacatacgcactgttgctgcatttggggctgaggatcggatatcacttcagtttgcttcagagctaaaccagccaaataagaaagcagttcttcgaggtcacatttccggtttttgctatggcctatcacagttctttgtattctgttcctatgcactcggcctttggtatgcatctgttctaatcaagcacaaaaactctaattttggagacatcatgaagtcctttatggtgttaattgtcactgcaatgtgcatagcagaaactcttgctcttgctccagacattgtaaaggggtcacaagcacttgcattgatttttagtatactcaacagagaaacagccatacattctaatgatcccacatcaaatgtggttgctgatatcagaggagacatagaattcagaaatgtgcggttttggtaccctgcacggtctgatatcaccatttttgacaacttgaatttgaaggtgtcaacaggaaagagccttgcagttgtcggtccaagtggttcacggaagagtactctgattgcactagtaatgagattttatgaccctattttcggagtagttatgattgatggacatgatatcaaaggcttaaacttgaaatctttgaggaagaaaatagggctagtccagcaagagccagcattgttctcaacaacagtttatgacaacatcaaatatgggaatgaggaagcatccgaagttgaggtaatgagggcagcagaagcagcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

638

Amino Acids

69.93

Weight (kDa)

7.71

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	148, 241, 521
Acc65I	GGTACC	1 cut(s)	1590
AccB1I	GGYRCC	1 cut(s)	1590
AccBSI	CCGCTC	3 cut(s)	589, 683, 835
AccI	GTMKAC	1 cut(s)	1492
AccII	CGCG	1 cut(s)	51
AciI	CCGC	5 cut(s)	49, 589, 683, 835, 1582
AclI	AACGTT	1 cut(s)	178
AclWI	GGATC	2 cut(s)	1209, 1520
AcsI	RAATTY	2 cut(s)	1568, 1630
AcuI	CTGAAG	2 cut(s)	1199, 1209
AfaI	GTAC	4 cut(s)	525, 660, 1592, 1693
AfeI	AGCGCT	1 cut(s)	943
AfiI	CCNNNNNNNGG	3 cut(s)	55, 384, 1733
AflII	CTTAAG	1 cut(s)	1097
AgsI	TTSAA	8 cut(s)	738, 756, 781, 855, 880, 1630, 1636, 1780
AhlI	ACTAGT	2 cut(s)	473, 1705
AleI	CACNNNNGTG	1 cut(s)	364
Alw26I	GTCTC	4 cut(s)	278, 1107, 1371, 1554
AlwI	GGATC	2 cut(s)	1209, 1520
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	1 cut(s)	383
Aor51HI	AGCGCT	1 cut(s)	943
AoxI	GGCC	3 cut(s)	368, 1288, 1327
ApeKI	GCWGC	8 cut(s)	102, 455, 559, 743, 1034, 1184, 1898, 1907
ApoI	RAATTY	2 cut(s)	1568, 1630
ArsI	GACNNNNNNTTYG	2 cut(s)	1715, 1747
AseI	ATTAAT	1 cut(s)	614
Asp700I	GAANNNNTTC	1 cut(s)	316
Asp718I	GGTACC	1 cut(s)	1590
AspLEI	GCGC	2 cut(s)	609, 944
AspS9I	GGNCC	1 cut(s)	1670
AsuHPI	GGTGA	3 cut(s)	143, 160, 1603
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	1670
BanI	GGYRCC	1 cut(s)	1590
BauI	CACGAG	1 cut(s)	1152
BbvCI	CCTCAGC	1 cut(s)	1197
BbvI	GCAGC	7 cut(s)	114, 442, 571, 755, 1046, 1171, 1910
BccI	CCATC	4 cut(s)	574, 668, 820, 1745
BciVI	GTATCC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	4 cut(s)	278, 1107, 1371, 1554
BcuI	ACTAGT	2 cut(s)	473, 1705
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	945
BfrI	CTTAAG	1 cut(s)	1097
BfuAI	ACCTGC	3 cut(s)	148, 241, 521
BfuI	GTATCC	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	1083
BmcAI	AGTACT	1 cut(s)	1693
Bme18I	GGWCC	1 cut(s)	1670
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	1670
BmiI	GGNNCC	1 cut(s)	1592
BmsI	GCATC	2 cut(s)	1349, 1883
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	1 cut(s)	1431
Bpu10I	CCTNAGC	1 cut(s)	1197
Bpu1102I	GCTNAGC	1 cut(s)	1083
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	1274
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 384, 1733
Bse1I	ACTGG	3 cut(s)	120, 799, 898
Bse3DI	GCAATG	3 cut(s)	241, 1077, 1422
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	2 cut(s)	806, 1874
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	55, 384, 1733
BseMI	GCAATG	3 cut(s)	241, 1077, 1422
BseMII	CTCAG	5 cut(s)	123, 209, 636, 1074, 1188
BseNI	ACTGG	3 cut(s)	120, 799, 898
BseRI	GAGGAG	2 cut(s)	411, 1572
BseXI	GCAGC	7 cut(s)	114, 442, 571, 755, 1046, 1171, 1910
BsgI	GTGCAG	2 cut(s)	992, 1581
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	370, 1290, 1329
BshNI	GGYRCC	1 cut(s)	1590
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	1275
BslI	CCNNNNNNNGG	3 cut(s)	55, 384, 1733
BsmAI	GTCTC	4 cut(s)	278, 1107, 1371, 1554
BsnI	GGCC	3 cut(s)	370, 1290, 1329
BsoBI	CYCGRG	1 cut(s)	383
Bsp143I	GATC	4 cut(s)	292, 724, 1201, 1525
Bsp1720I	GCTNAGC	1 cut(s)	1083
BspACI	CCGC	5 cut(s)	49, 589, 683, 835, 1582
BspANI	GGCC	3 cut(s)	370, 1290, 1329
BspCNI	CTCAG	5 cut(s)	122, 208, 635, 1075, 1189
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	1383
BspLI	GGNNCC	1 cut(s)	1592
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	3 cut(s)	148, 241, 521
BspPI	GGATC	2 cut(s)	1209, 1520
BspT107I	GGYRCC	1 cut(s)	1590
BspTI	CTTAAG	1 cut(s)	1097
BsrBI	CCGCTC	3 cut(s)	589, 683, 835
BsrDI	GCAATG	3 cut(s)	241, 1077, 1422
BsrI	ACTGG	3 cut(s)	120, 799, 898
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	4 cut(s)	292, 724, 1201, 1525
BssNAI	GTATAC	1 cut(s)	1493
BssSI	CACGAG	1 cut(s)	1152
BssT1I	CCWWGG	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	1493
Bst2BI	CACGAG	1 cut(s)	1152
Bst4CI	ACNGT	7 cut(s)	541, 1092, 1124, 1180, 1299, 1602, 1840
Bst6I	CTCTTC	1 cut(s)	1682
BstAFI	CTTAAG	1 cut(s)	1097
BstAPI	GCANNNNNTGC	3 cut(s)	215, 464, 995
BstC8I	GCNNGC	4 cut(s)	155, 220, 639, 1821
BstDEI	CTNAG	6 cut(s)	109, 195, 622, 719, 1083, 1197
BstF5I	GGATG	2 cut(s)	806, 1874
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	2 cut(s)	609, 944
BstKTI	GATC	4 cut(s)	295, 727, 1204, 1528
BstMAI	GTCTC	4 cut(s)	278, 1107, 1371, 1554
BstMBI	GATC	4 cut(s)	292, 724, 1201, 1525
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	7 cut(s)	114, 442, 571, 755, 1046, 1171, 1910
BstZ17I	GTATAC	1 cut(s)	1493
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	370, 1290, 1329
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	806, 1874
BtsI	GCAGTG	1 cut(s)	1410
BtsIMutI	CAGTG	7 cut(s)	792, 800, 891, 899, 1129, 1176, 1410
BveI	ACCTGC	3 cut(s)	148, 241, 521
Cac8I	GCNNGC	4 cut(s)	155, 220, 639, 1821
CaiI	CAGNNNCTG	1 cut(s)	995
CciI	TCATGA	1 cut(s)	1383
CfoI	GCGC	2 cut(s)	609, 944
Cfr13I	GGNCC	1 cut(s)	1670
Csp6I	GTAC	4 cut(s)	524, 659, 1591, 1692
CviAII	CATG	5 cut(s)	170, 491, 514, 1384, 1757
CviQI	GTAC	4 cut(s)	524, 659, 1591, 1692
DdeI	CTNAG	6 cut(s)	109, 195, 622, 719, 1083, 1197
DpnI	GATC	4 cut(s)	294, 726, 1203, 1527
DpnII	GATC	4 cut(s)	292, 724, 1201, 1525
Eam1104I	CTCTTC	1 cut(s)	1682
EarI	CTCTTC	1 cut(s)	1682
Eco130I	CCWWGG	1 cut(s)	433
Eco32I	GATATC	4 cut(s)	1209, 1552, 1609, 1762
Eco47I	GGWCC	1 cut(s)	1670
Eco47III	AGCGCT	1 cut(s)	943
Eco57I	CTGAAG	2 cut(s)	1199, 1209
Eco88I	CYCGRG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	1568
EcoRV	GATATC	4 cut(s)	1209, 1552, 1609, 1762
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	1342
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	173, 494, 517, 1387, 1760
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 1242, 1274
FatI	CATG	5 cut(s)	169, 490, 513, 1383, 1756
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	1492
FokI	GGATG	2 cut(s)	793, 1861
GlaI	GCGC	2 cut(s)	608, 943
GsuI	CTGGAG	1 cut(s)	1431
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	370, 1290, 1329
HapII	CCGG	1 cut(s)	1275
HhaI	GCGC	2 cut(s)	609, 944
Hin1II	CATG	5 cut(s)	173, 494, 517, 1387, 1760
Hin6I	GCGC	2 cut(s)	607, 942
HinP1I	GCGC	2 cut(s)	607, 942
HincII	GTYRAC	2 cut(s)	499, 1644
HindII	GTYRAC	2 cut(s)	499, 1644
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	626
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	1275
HphI	GGTGA	3 cut(s)	143, 160, 1603
Hpy166II	GTNNAC	6 cut(s)	499, 800, 899, 1493, 1644, 1682
Hpy188III	TCNNGA	4 cut(s)	227, 1154, 1384, 1448
Hpy8I	GTNNAC	6 cut(s)	499, 800, 899, 1493, 1644, 1682
HpyAV	CCTTC	2 cut(s)	1021, 1630
HpyCH4III	ACNGT	7 cut(s)	541, 1092, 1124, 1180, 1299, 1602, 1840
HpyCH4IV	ACGT	2 cut(s)	178, 657
HpyF3I	CTNAG	6 cut(s)	109, 195, 622, 719, 1083, 1197
HpySE526I	ACGT	2 cut(s)	178, 657
Hsp92II	CATG	5 cut(s)	173, 494, 517, 1387, 1760
HspAI	GCGC	2 cut(s)	607, 942
KpnI	GGTACC	1 cut(s)	1594
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	292, 724, 1201, 1525
LmnI	GCTCC	7 cut(s)	424, 472, 586, 680, 832, 1070, 1450
Lsp1109I	GCAGC	7 cut(s)	114, 442, 571, 755, 1046, 1171, 1910
LweI	GCATC	2 cut(s)	1349, 1883
MaeII	ACGT	2 cut(s)	178, 657
MaeIII	GTNAC	5 cut(s)	3, 991, 1265, 1408, 1464
MalI	GATC	4 cut(s)	294, 726, 1203, 1527
MbiI	CCGCTC	3 cut(s)	589, 683, 835
MboI	GATC	4 cut(s)	292, 724, 1201, 1525
MboII	GAAGA	4 cut(s)	309, 1250, 1699, 1804
MfeI	CAATTG	2 cut(s)	966, 1161
MmeI	TCCRAC	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	1342
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	9 cut(s)	258, 498, 614, 654, 695, 1019, 1098, 1403, 1772
MslI	CAYNNNNRTG	7 cut(s)	334, 364, 578, 672, 824, 1415, 1521
MspA1I	CMGCKG	1 cut(s)	1037
MspCI	CTTAAG	1 cut(s)	1097
MspI	CCGG	1 cut(s)	1275
MunI	CAATTG	2 cut(s)	966, 1161
MvnI	CGCG	1 cut(s)	51
NdeII	GATC	4 cut(s)	292, 724, 1201, 1525
NlaIII	CATG	5 cut(s)	173, 494, 517, 1387, 1760
NlaIV	GGNNCC	1 cut(s)	1592
NmeAIII	GCCGAG	1 cut(s)	1305
NmuCI	GTSAC	4 cut(s)	3, 1265, 1408, 1464
NsiI	ATGCAT	1 cut(s)	1342
OliI	CACNNNNGTG	1 cut(s)	364
PagI	TCATGA	1 cut(s)	1383
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	626
PshBI	ATTAAT	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	1592
PspPI	GGNCC	1 cut(s)	1670
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	4 cut(s)	525, 660, 1592, 1693
RsaNI	GTAC	4 cut(s)	524, 659, 1591, 1692
RseI	CAYNNNNRTG	7 cut(s)	334, 364, 578, 672, 824, 1415, 1521
SaqAI	TTAA	9 cut(s)	258, 498, 614, 654, 695, 1019, 1098, 1403, 1772
Sau3AI	GATC	4 cut(s)	292, 724, 1201, 1525
Sau96I	GGNCC	1 cut(s)	1670
ScaI	AGTACT	1 cut(s)	1693
SfaNI	GCATC	2 cut(s)	1349, 1883
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	1670
SmiMI	CAYNNNNRTG	7 cut(s)	334, 364, 578, 672, 824, 1415, 1521
SmlI	CTYRAG	1 cut(s)	1097
SmoI	CTYRAG	1 cut(s)	1097
SpeI	ACTAGT	2 cut(s)	473, 1705
SsiI	CCGC	5 cut(s)	49, 589, 683, 835, 1582
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	7 cut(s)	541, 1092, 1124, 1180, 1299, 1602, 1840
TaiI	ACGT	2 cut(s)	181, 660
TaqI	TCGA	2 cut(s)	226, 1261
TaqII	GACCGA	1 cut(s)	1658
TatI	WGTACW	2 cut(s)	523, 1691
TauI	GCSGC	3 cut(s)	592, 686, 838
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	9 cut(s)	258, 498, 614, 654, 695, 1019, 1098, 1403, 1772
Tru9I	TTAA	9 cut(s)	258, 498, 614, 654, 695, 1019, 1098, 1403, 1772
TscAI	CASTG	7 cut(s)	799, 807, 898, 906, 1129, 1183, 1417
TseFI	GTSAC	4 cut(s)	3, 1265, 1408, 1464
TseI	GCWGC	8 cut(s)	102, 455, 559, 743, 1034, 1184, 1898, 1907
Tsp45I	GTSAC	4 cut(s)	3, 1265, 1408, 1464
TspDTI	ATGAA	2 cut(s)	318, 1400
TspGWI	ACGGA	1 cut(s)	1699
TspRI	CASTG	7 cut(s)	799, 807, 898, 906, 1129, 1183, 1417
Vha464I	CTTAAG	1 cut(s)	1097
VpaK11BI	GGWCC	1 cut(s)	1670
VspI	ATTAAT	1 cut(s)	614
XapI	RAATTY	2 cut(s)	1568, 1630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1537
XmiI	GTMKAC	1 cut(s)	1492
XmnI	GAANNNNTTC	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	1693
Zsp2I	ATGCAT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.