Rh6DG433000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001951
Physical Location & Seq
Forward (+)
61202486 .. 61203412
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG433000.1

Sequence Viewer

Length: 567 bp
ATGGAGGAAGTGGAGCTTGCCTCCAAATCCAGTGAGTTTTCGGACAACCCACATCCGAAAATGAACCAACCAGTGCATTCAAACAAGCAGAAGCCGCGCAGTGTTTCATTTCTTGGCCTCTTTGCTGCTGCTGATAAAATGGACTATGTCTTGATGCTTTTCGGAAGTTTCGGAGCGTGTATCCATGGTGCTGCACTTCCTGTATTCTTTGTCTTGTATGGCAGGATGATAGATTCTTTGGGGCATATGGCTAAGCATCCTAACAAAATGTCTTCCCGGATTTCTGAGTATGCTTTGTACTTGATCTATCTTGGAATTGTTCTCTTTATATCAGCATGGATAGGTGTAGCATCTTGGACGCGAACTGGTGAGAGGCAGACAGCTCGTTTGCGATTGAAGTATCTTCAATCAGTTCTAAGGAAGGATATTGATTTTTTCGACACTGAAGCCAGAGACACTAACATCATTTTCCACATTTCAAGTGATGCTATACTAGTCCAAGATGCAATAGGTGACAAGACAGGCCACGTACACTTTGCGTTACCTAGCTTTCTCAGTTCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

188

Amino Acids

21.09

Weight (kDa)

7.91

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 53 - 184 2.1e-19 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 97, 361
AciI CCGC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 2 cut(s) 299, 531
AgsI TTSAA 4 cut(s) 81, 397, 407, 480
AhlI ACTAGT 1 cut(s) 493
AluBI AGCT 3 cut(s) 16, 383, 549
AluI AGCT 3 cut(s) 16, 383, 549
Alw26I GTCTC 1 cut(s) 447
AoxI GGCC 2 cut(s) 115, 523
ApeKI GCWGC 3 cut(s) 125, 128, 191
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 380, 524
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 112, 115, 178
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciVI GTATCC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 447
BcuI ACTAGT 1 cut(s) 493
BfaI CTAG 2 cut(s) 494, 546
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 4 cut(s) 95, 126, 129, 192
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 4 cut(s) 96, 127, 130, 193
Bme1390I CCNGG 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 5 cut(s) 144, 265, 359, 475, 493
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 277
BsaAI YACGTR 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 30, 71, 370
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 52, 231, 256
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 30, 71, 370
BseXI GCAGC 3 cut(s) 112, 115, 178
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 97, 361
BshFI GGCC 2 cut(s) 117, 525
BsiSI CCGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 2 cut(s) 117, 525
Bsp143I GATC 1 cut(s) 303
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 117, 525
BspCNI CTCAG 2 cut(s) 277, 567
BspFNI CGCG 2 cut(s) 97, 361
BsrI ACTGG 3 cut(s) 30, 71, 370
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 4 cut(s) 252, 285, 416, 554
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 52, 231, 256
BstFNI CGCG 2 cut(s) 97, 361
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 2 cut(s) 97, 361
BstV1I GCAGC 3 cut(s) 112, 115, 178
BstV2I GAAGAC 1 cut(s) 264
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 117, 525
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 52, 231, 256
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 4 cut(s) 37, 78, 106, 441
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 298, 530
CviAII CATG 2 cut(s) 185, 336
CviJI RGCY 8 cut(s) 16, 94, 117, 251, 383, 449, 525, 549
CviKI_1 RGCY 8 cut(s) 16, 94, 117, 251, 383, 449, 525, 549
CviQI GTAC 2 cut(s) 298, 530
DdeI CTNAG 4 cut(s) 252, 285, 416, 554
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 2 cut(s) 188, 339
FaiI YATR 9 cut(s) 147, 186, 219, 246, 248, 291, 329, 337, 491
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 2 cut(s) 184, 335
FauNDI CATATG 1 cut(s) 246
Fnu4HI GCNGC 4 cut(s) 95, 126, 129, 192
FokI GGATG 3 cut(s) 39, 238, 243
Fsp4HI GCNGC 4 cut(s) 95, 126, 129, 192
FspBI CTAG 2 cut(s) 494, 546
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 95, 126, 129, 192
HaeIII GGCC 2 cut(s) 117, 525
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 99
Hin1II CATG 2 cut(s) 188, 339
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 380, 524
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 5 cut(s) 43, 57, 164, 173, 286
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 76, 194, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 4 cut(s) 252, 285, 416, 554
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 2 cut(s) 188, 339
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 13, 173
LpnPI CCDG 8 cut(s) 43, 84, 208, 213, 290, 351, 463, 507
Lsp1109I GCAGC 3 cut(s) 112, 115, 178
LweI GCATC 5 cut(s) 144, 265, 359, 475, 493
MaeI CTAG 2 cut(s) 494, 546
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 512, 540
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 264, 395
MluCI AATT 1 cut(s) 315
MnlI CCTC 3 cut(s) 31, 128, 366
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 76
MvnI CGCG 2 cut(s) 97, 361
MwoI GCNNNNNNNGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 246
NdeII GATC 1 cut(s) 303
NlaIII CATG 2 cut(s) 188, 339
NmuCI GTSAC 1 cut(s) 512
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 4 cut(s) 96, 127, 130, 193
Ppu21I YACGTR 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 299, 531
RsaNI GTAC 2 cut(s) 298, 530
SatI GCNGC 4 cut(s) 95, 126, 129, 192
Sau3AI GATC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 277
SetI ASST 7 cut(s) 18, 346, 385, 514, 531, 547, 551
SfaNI GCATC 5 cut(s) 144, 265, 359, 475, 493
SpeI ACTAGT 1 cut(s) 493
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 494, 546
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 438
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 4 cut(s) 37, 78, 106, 448
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 125, 128, 191
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 77, 96, 549
TspRI CASTG 4 cut(s) 37, 78, 106, 448
Tth111I GACNNNGTC 1 cut(s) 146
XspI CTAG 2 cut(s) 494, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.