Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Reverse (-)

560646 .. 562492

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAGGAAGTAGAGCTTGCCTCCGACAAGTTTTCTGACGGAAACCCGCTTCCGAAAATGGACAAACCAACGAACTCGACCAAGCAGCGCAGCGTGTCGTTCCTCGGACTTTTTGCTGCTGCTGACAAGGTGGACTGCGTGTTGATGTTTTTGGGAAGTGTTGGGGCTTGTATCCATGGTGGTGTGCTTCCTGTGTTCTTTGTTTTATTCGGTCGCATGATCGATTCGTTAGGACATCTGGCGATGAATCCACAACAACTGTCTGCCCGGATTTCCGAGTATGCTTTGTACTTGGTATATCTTGGACTCGTTCTTTTCGCATCAGCATGGATTGGTGTAGCATTCTGGACGCGAACCGGGGAGAGGCAGACAGCTCGTTTGCGGATGAAGTATCTCCAATCAGTTCTAAACAAGGACATTAATTTTTTCGACACTGAAGCCAGAGACACCAACATTATTTTCCACATTTCAAGTGATGCAATTCTAGTGCAAGATGCGATAGGTGACAAGACTGGCCATGCTTTGCGCTACCTTTCACAGTTCCTTGTTGGATTTGCGATCGGTTTTACATCGGTATGGCAGCTTACGCTTCTGACCTTGGCTGTGGTTCCATTCATAGCTATTGCAGGTGGAGCTTATACTATAATCATGTCTACCTTATCCGAAAAGGGTGAGGCTGCTTACGCAGAAGCCGGCAAGGTTGCTGAAGAGGTTATTTCGCAGATTCGTACAGTGTACTCATTCGGGGGAGAGGACAGAGCCATTGAAGCATACTCAACCTCACTGAACAAGGCCCTCAAGCTGGGAAAGAAGACCGGTGTTGCGAAAGGAGTTGGTGTAGGGTTTACATACGGGCTGTTGTTCTGCGCTTGGGCATTGCTTCTCTGGTATGCCAGCATACTTGTAAGGCATCATGACACGAACGGGGGGAAAGCATTCACAACAATCATCAACGTCATCTTCAGCGGATTTGCTCTTGGCCAAGCTGCTCCAAACCTTGGTGCAATTGCAAAAGGGAGAGCTGCTGCTGCTAATATCATGACGATGATCGATTCGGATTCCAAATCCTGTAAGGTCACGGACAACGGAATAGTGTTGCCGAAAGTGTCTGGGCAGATTGACTTCTGTGAGGTTGGTTTCACCTATCCATCACGATCAAATATGGTGTTCGATAACTTGAGCTTTTCGATTGGAGCTGGAAAGACTTTTGCAGTTGTTGGCCCTAGTGGTTCAGGAAAGAGCACCGTTATATCCATGATTCAGCGATTCTACCACCCCGTTTCAGGTATTCTGGTCCTGTCTAATAACCATTTCGTTTCTTGTTTTGAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

445

Amino Acids

47.83

Weight (kDa)

8.4

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	50 - 321	4.2e-54	ABC transporter transmembrane region
ABC_tran	PF00005	391 - 437	1.4e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	998
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	1 cut(s)	352
AciI	CCGC	3 cut(s)	47, 382, 966
AcoI	YGGCCR	2 cut(s)	514, 979
AcuI	CTGAAG	3 cut(s)	456, 726, 946
AfaI	GTAC	3 cut(s)	290, 730, 737
AfiI	CCNNNNNNNGG	4 cut(s)	363, 802, 998, 1283
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	2 cut(s)	471, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
Alw21I	GWGCWC	1 cut(s)	1244
Alw26I	GTCTC	1 cut(s)	438
AoxI	GGCC	4 cut(s)	514, 792, 979, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AseI	ATTAAT	1 cut(s)	420
AsiGI	ACCGGT	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	935
AspLEI	GCGC	3 cut(s)	90, 528, 869
AspS9I	GGNCC	3 cut(s)	793, 1220, 1294
AsuC2I	CCSGG	2 cut(s)	268, 358
AsuHPI	GGTGA	3 cut(s)	515, 683, 1132
AvaII	GGWCC	1 cut(s)	1294
BalI	TGGCCA	2 cut(s)	516, 981
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	1244
BccI	CCATC	1 cut(s)	1156
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciVI	GTATCC	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	268, 358
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	485, 1224
BfuAI	ACCTGC	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	268, 358
Bme18I	GGWCC	1 cut(s)	1294
BmgT120I	GGNCC	3 cut(s)	793, 1220, 1294
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	268, 358
BmsI	GCATC	4 cut(s)	329, 466, 484, 919
BpiI	GAAGAC	1 cut(s)	818
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	782, 1198
BpuMI	CCSGG	2 cut(s)	268, 358
Bsa29I	ATCGAT	2 cut(s)	222, 1050
BsaJI	CCNNGG	5 cut(s)	103, 175, 357, 597, 997
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 802, 998, 1283
Bse118I	RCCGGY	2 cut(s)	692, 815
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	875
BseCI	ATCGAT	2 cut(s)	222, 1050
BseDI	CCNNGG	5 cut(s)	103, 175, 357, 597, 997
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	363, 802, 998, 1283
BseMI	GCAATG	1 cut(s)	875
BseNI	ACTGG	1 cut(s)	517
BseYI	CCCAGC	1 cut(s)	802
Bsh1236I	CGCG	1 cut(s)	352
Bsh1285I	CGRYCG	2 cut(s)	214, 561
BshFI	GGCC	4 cut(s)	516, 794, 981, 1221
BshTI	ACCGGT	1 cut(s)	815
BshVI	ATCGAT	2 cut(s)	222, 1050
BsiEI	CGRYCG	2 cut(s)	214, 561
BsiHKAI	GWGCWC	1 cut(s)	1244
BsiSI	CCGG	4 cut(s)	268, 357, 693, 816
BslI	CCNNNNNNNGG	4 cut(s)	363, 802, 998, 1283
BsmAI	GTCTC	1 cut(s)	438
BsmI	GAATGC	2 cut(s)	341, 935
BsnI	GGCC	4 cut(s)	516, 794, 981, 1221
Bsp1286I	GDGCHC	1 cut(s)	1244
Bsp143I	GATC	4 cut(s)	219, 558, 1047, 1154
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	3 cut(s)	47, 382, 966
BspANI	GGCC	4 cut(s)	516, 794, 981, 1221
BspDI	ATCGAT	2 cut(s)	222, 1050
BspFNI	CGCG	1 cut(s)	352
BspHI	TCATGA	2 cut(s)	913, 1038
BspLI	GGNNCC	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	2 cut(s)	692, 815
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	2 cut(s)	692, 815
BssECI	CCNNGG	5 cut(s)	103, 175, 357, 597, 997
BssMI	GATC	4 cut(s)	219, 558, 1047, 1154
BssT1I	CCWWGG	3 cut(s)	175, 597, 997
Bst4CI	ACNGT	4 cut(s)	261, 540, 733, 1246
Bst6I	CTCTTC	1 cut(s)	702
BstC8I	GCNNGC	3 cut(s)	18, 694, 895
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	90, 528, 869
BstKTI	GATC	4 cut(s)	222, 561, 1050, 1157
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	4 cut(s)	219, 558, 1047, 1154
BstMCI	CGRYCG	2 cut(s)	214, 561
BstMWI	GCNNNNNNNGC	5 cut(s)	586, 632, 683, 767, 1028
BstSCI	CCNGG	2 cut(s)	266, 356
BstUI	CGCG	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	818
Bsu15I	ATCGAT	2 cut(s)	222, 1050
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	516, 794, 981, 1221
BsuTUI	ATCGAT	2 cut(s)	222, 1050
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	432, 738, 782
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	3 cut(s)	18, 694, 895
CciI	TCATGA	2 cut(s)	913, 1038
CfoI	GCGC	3 cut(s)	90, 528, 869
Cfr10I	RCCGGY	2 cut(s)	692, 815
Cfr13I	GGNCC	3 cut(s)	793, 1220, 1294
ClaI	ATCGAT	2 cut(s)	222, 1050
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	289, 729, 736
CspAI	ACCGGT	1 cut(s)	815
CviAII	CATG	8 cut(s)	176, 217, 327, 518, 649, 914, 1039, 1255
CviQI	GTAC	3 cut(s)	289, 729, 736
DpnI	GATC	4 cut(s)	221, 560, 1049, 1156
DpnII	GATC	4 cut(s)	219, 558, 1047, 1154
EaeI	YGGCCR	2 cut(s)	514, 979
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco130I	CCWWGG	3 cut(s)	175, 597, 997
Eco47I	GGWCC	1 cut(s)	1294
Eco57I	CTGAAG	3 cut(s)	456, 726, 946
EcoO109I	RGGNCCY	1 cut(s)	793
EcoT14I	CCWWGG	3 cut(s)	175, 597, 997
ErhI	CCWWGG	3 cut(s)	175, 597, 997
FaeI	CATG	8 cut(s)	179, 220, 330, 521, 652, 917, 1042, 1258
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	8 cut(s)	175, 216, 326, 517, 648, 913, 1038, 1254
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	1 cut(s)	397
FspBI	CTAG	2 cut(s)	485, 1224
GlaI	GCGC	3 cut(s)	89, 527, 868
GsaI	CCCAGC	1 cut(s)	806
HaeIII	GGCC	4 cut(s)	516, 794, 981, 1221
HapII	CCGG	4 cut(s)	268, 357, 693, 816
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	3 cut(s)	90, 528, 869
Hin1II	CATG	8 cut(s)	179, 220, 330, 521, 652, 917, 1042, 1258
Hin6I	GCGC	3 cut(s)	88, 526, 867
HinP1I	GCGC	3 cut(s)	88, 526, 867
HinfI	GANTC	8 cut(s)	224, 247, 306, 724, 1052, 1058, 1258, 1266
HpaII	CCGG	4 cut(s)	268, 357, 693, 816
HphI	GGTGA	3 cut(s)	515, 683, 1132
Hpy166II	GTNNAC	4 cut(s)	133, 654, 736, 846
Hpy188I	TCNGA	8 cut(s)	25, 37, 54, 107, 277, 594, 664, 1057
Hpy188III	TCNNGA	5 cut(s)	346, 914, 1039, 1152, 1233
Hpy8I	GTNNAC	4 cut(s)	133, 654, 736, 846
HpyCH4III	ACNGT	4 cut(s)	261, 540, 733, 1246
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	6 cut(s)	479, 490, 626, 1004, 1010, 1211
HpyF10VI	GCNNNNNNNGC	5 cut(s)	586, 632, 683, 767, 1028
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	8 cut(s)	179, 220, 330, 521, 652, 917, 1042, 1258
HspAI	GCGC	3 cut(s)	88, 526, 867
KroI	GCCGGC	1 cut(s)	692
KroNI	GCCGGC	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	219, 558, 1047, 1154
LmnI	GCTCC	3 cut(s)	632, 994, 1193
LweI	GCATC	4 cut(s)	329, 466, 484, 919
MaeI	CTAG	2 cut(s)	485, 1224
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	503, 1075
MalI	GATC	4 cut(s)	221, 560, 1049, 1156
MboI	GATC	4 cut(s)	219, 558, 1047, 1154
MboII	GAAGA	3 cut(s)	719, 823, 952
MfeI	CAATTG	1 cut(s)	1005
MhlI	GDGCHC	1 cut(s)	1244
MlsI	TGGCCA	2 cut(s)	516, 981
MluCI	AATT	3 cut(s)	421, 480, 1005
MluNI	TGGCCA	2 cut(s)	516, 981
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	2 cut(s)	48, 529
Mox20I	TGGCCA	2 cut(s)	516, 981
MroNI	GCCGGC	1 cut(s)	692
MroXI	GAANNNNTTC	1 cut(s)	935
MscI	TGGCCA	2 cut(s)	516, 981
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	4 cut(s)	180, 325, 574, 1043
Msp20I	TGGCCA	2 cut(s)	516, 981
MspA1I	CMGCKG	1 cut(s)	966
MspI	CCGG	4 cut(s)	268, 357, 693, 816
MspR9I	CCNGG	2 cut(s)	268, 358
MunI	CAATTG	1 cut(s)	1005
Mva1269I	GAATGC	2 cut(s)	341, 935
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	5 cut(s)	586, 632, 683, 767, 1028
NaeI	GCCGGC	1 cut(s)	694
NciI	CCSGG	2 cut(s)	268, 358
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	4 cut(s)	219, 558, 1047, 1154
NgoMIV	GCCGGC	1 cut(s)	692
NlaIII	CATG	8 cut(s)	179, 220, 330, 521, 652, 917, 1042, 1258
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	2 cut(s)	503, 1075
PagI	TCATGA	2 cut(s)	913, 1038
PaqCI	CACCTGC	1 cut(s)	617
PctI	GAATGC	2 cut(s)	341, 935
PdiI	GCCGGC	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	7 cut(s)	224, 247, 724, 1052, 1058, 1258, 1266
PflMI	CCANNNNNTGG	1 cut(s)	998
PinAI	ACCGGT	1 cut(s)	815
Ple19I	CGATCG	1 cut(s)	561
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	802
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	3 cut(s)	793, 1220, 1294
PvuI	CGATCG	1 cut(s)	561
RsaI	GTAC	3 cut(s)	290, 730, 737
RsaNI	GTAC	3 cut(s)	289, 729, 736
RseI	CAYNNNNRTG	4 cut(s)	180, 325, 574, 1043
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	4 cut(s)	219, 558, 1047, 1154
Sau96I	GGNCC	3 cut(s)	793, 1220, 1294
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	268, 358
SduI	GDGCHC	1 cut(s)	1244
SfaNI	GCATC	4 cut(s)	329, 466, 484, 919
SinI	GGWCC	1 cut(s)	1294
SmiMI	CAYNNNNRTG	4 cut(s)	180, 325, 574, 1043
SmlI	CTYRAG	2 cut(s)	797, 1177
SmoI	CTYRAG	2 cut(s)	797, 1177
Sse9I	AATT	3 cut(s)	421, 480, 1005
SsiI	CCGC	3 cut(s)	47, 382, 966
SspMI	CTAG	2 cut(s)	485, 1224
StyD4I	CCNGG	2 cut(s)	266, 356
StyI	CCWWGG	3 cut(s)	175, 597, 997
TaaI	ACNGT	4 cut(s)	261, 540, 733, 1246
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	6 cut(s)	77, 222, 429, 1050, 1170, 1187
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	421, 480, 1005
TatI	WGTACW	2 cut(s)	288, 735
TfiI	GAWTC	7 cut(s)	224, 247, 724, 1052, 1058, 1258, 1266
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	439, 738, 789
TseFI	GTSAC	2 cut(s)	503, 1075
Tsp45I	GTSAC	2 cut(s)	503, 1075
TspDTI	ATGAA	3 cut(s)	260, 401, 604
TspGWI	ACGGA	3 cut(s)	54, 1094, 1101
TspRI	CASTG	3 cut(s)	439, 738, 789
Van91I	CCANNNNNTGG	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	1294
VspI	ATTAAT	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	2 cut(s)	485, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.