RchiOBHm_Chr6g0303271

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001951
Physical Location & Seq
Forward (+)
63055702 .. 63056367
666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27244

Sequence Viewer

Length: 663 bp
ATGGTAAGGTTGTTCAGAGTGGCAGCCACTCAGAACTGGTGTGTAAGAGGTGAGTATGCTAGCCTGGTGAGCTTGCAGGTATTGGAACATGACAAACGTTCTAGCTCACTATCTCAGTCTGTAAGTGCAACAAATGCAAGCTTTCGAGAAAGCAATGATAGAAATCAGCAGGTTGTTAAGTCAATTACAACAAGAGAGCAGGAGCCAAGTGATCAAAAGCTGTCCAAAAGAAGTTCTTCTCCTAGTTCATCAATATGGGAATTAGTAAAACTAAATGCACAGGAGTGGCCTTACGCGATACTCGGGTCAGTTGGTGCAATTCCGGCAGGAATGGAAGCTCCTCTCTTTGCCCTTGGAATAACTCACATCTTGGCTGCATTTTATGCTCCAACTAGTTCCCAAATCAAACATGAGGTTAACAAGGTAATTCTCATGTTTGTTGTACTAGCAGGTATTACTGTTCCAATGTATCTGTTGCAGCACTACTTCTACACATTGATGGGGGAGCGGCTCACAAGTCGTGTGCGCCTATTAATGTTCTCAGGTTCTTTTCTGCTTGCCATTTCCTTACTTAACAGTTTAATTCCACATAGTAGAGCAAATCTAAGAGATCTATCTCATTTCAACTGCAGCTATCCTTTCAAACGATGTTGGGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

220

Amino Acids

24.71

Weight (kDa)

9.63

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 109 - 189 8.8e-06 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 67, 160, 440
AccBSI CCGCTC 1 cut(s) 508
AccII CGCG 1 cut(s) 296
AciI CCGC 1 cut(s) 508
AclI AACGTT 1 cut(s) 97
AfaI GTAC 1 cut(s) 444
AgsI TTSAA 2 cut(s) 625, 643
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 1 cut(s) 63
AleI CACNNNNGTG 1 cut(s) 283
AluBI AGCT 6 cut(s) 72, 105, 141, 220, 338, 633
AluI AGCT 6 cut(s) 72, 105, 141, 220, 338, 633
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 4 cut(s) 23, 374, 478, 630
AseI ATTAAT 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 62, 79
AsuNHI GCTAGC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 290, 323
BbvI GCAGC 4 cut(s) 35, 361, 490, 642
BccI CCATC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 211
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 5 cut(s) 60, 102, 243, 393, 446
BfmI CTRYAG 1 cut(s) 628
BfuAI ACCTGC 3 cut(s) 67, 160, 440
BglII AGATCT 1 cut(s) 610
BisI GCNGC 5 cut(s) 24, 375, 479, 509, 631
BlsI GCNGC 5 cut(s) 25, 376, 480, 510, 632
Bme1390I CCNGG 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 162
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 44, 128, 555
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 35, 361, 490, 642
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 2 cut(s) 211, 610
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 3 cut(s) 43, 127, 554
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 632
BspMI ACCTGC 3 cut(s) 67, 160, 440
BspOI GCTAGC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 211, 610
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 460, 578
BstAPI GCANNNNNTGC 2 cut(s) 134, 383
BstC8I GCNNGC 4 cut(s) 61, 74, 139, 558
BstDEI CTNAG 4 cut(s) 30, 114, 541, 605
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 2 cut(s) 214, 613
BstMBI GATC 2 cut(s) 211, 610
BstMWI GCNNNNNNNGC 4 cut(s) 69, 134, 323, 383
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 628
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 4 cut(s) 35, 361, 490, 642
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 1 cut(s) 289
BveI ACCTGC 3 cut(s) 67, 160, 440
Cac8I GCNNGC 4 cut(s) 61, 74, 139, 558
CfoI GCGC 1 cut(s) 528
Csp6I GTAC 1 cut(s) 443
CviAII CATG 3 cut(s) 89, 410, 433
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 4 cut(s) 30, 114, 541, 605
DpnI GATC 2 cut(s) 213, 612
DpnII GATC 2 cut(s) 211, 610
Eco130I CCWWGG 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 92, 413, 436
FaiI YATR 7 cut(s) 57, 90, 256, 384, 411, 434, 591
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 3 cut(s) 88, 409, 432
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 24, 375, 479, 509, 631
Fsp4HI GCNGC 5 cut(s) 24, 375, 479, 509, 631
FspBI CTAG 5 cut(s) 60, 102, 243, 393, 446
GlaI GCGC 1 cut(s) 527
GluI GCNGC 5 cut(s) 24, 375, 479, 509, 631
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 528
Hin1II CATG 3 cut(s) 92, 413, 436
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 62, 79
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 17, 33
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 460, 578
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 8 cut(s) 76, 128, 137, 278, 317, 377, 478, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 134, 323, 383
HpyF3I CTNAG 4 cut(s) 30, 114, 541, 605
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 92, 413, 436
HspAI GCGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 211
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 211, 610
LmnI GCTCC 4 cut(s) 202, 343, 391, 505
Lsp1109I GCAGC 4 cut(s) 35, 361, 490, 642
MaeI CTAG 5 cut(s) 60, 102, 243, 393, 446
MaeII ACGT 1 cut(s) 97
MalI GATC 2 cut(s) 213, 612
MbiI CCGCTC 1 cut(s) 508
MboI GATC 2 cut(s) 211, 610
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 610
MluCI AATT 5 cut(s) 183, 260, 318, 426, 582
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 3 cut(s) 41, 351, 406
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 5 cut(s) 177, 417, 533, 573, 581
MslI CAYNNNNRTG 3 cut(s) 253, 283, 497
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 69, 134, 323, 383
NdeII GATC 2 cut(s) 211, 610
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 92, 413, 436
NlaIV GGNNCC 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 235
PkrI GCNGC 5 cut(s) 25, 376, 480, 510, 632
PshBI ATTAAT 1 cut(s) 533
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 3 cut(s) 253, 283, 497
SaqAI TTAA 5 cut(s) 177, 417, 533, 573, 581
SatI GCNGC 5 cut(s) 24, 375, 479, 509, 631
Sau3AI GATC 2 cut(s) 211, 610
ScrFI CCNGG 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 628
SmiMI CAYNNNNRTG 3 cut(s) 253, 283, 497
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 5 cut(s) 183, 260, 318, 426, 582
SsiI CCGC 1 cut(s) 508
SspMI CTAG 5 cut(s) 60, 102, 243, 393, 446
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 460, 578
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 145
TasI AATT 5 cut(s) 183, 260, 318, 426, 582
TatI WGTACW 1 cut(s) 442
TauI GCSGC 1 cut(s) 511
Tru1I TTAA 5 cut(s) 177, 417, 533, 573, 581
Tru9I TTAA 5 cut(s) 177, 417, 533, 573, 581
TseI GCWGC 4 cut(s) 23, 374, 478, 630
TspDTI ATGAA 1 cut(s) 237
VspI ATTAAT 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 5 cut(s) 60, 102, 243, 393, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.