Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Reverse (-)

67689451 .. 67690888

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG468800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTTGCGAGAACAGATGGGATTGGTTTACCTGATGGCTACAACACTCAGGCTGGAGAGGGAGGAACTCAGCTTTCTAGAGGGCAGAAACAGAGAATAGCAATTGCGAGAGCAGTTCTGAGAAACCCAAAAATATTACTCTTGGATGAGGCCACTAGTGCTCTTGATGCAGAATCAGAACCTAAAATTGTTCAGCAAGCACTGGATAAAATCATGTCACATAGAGCTACAATCATTGTTGCTCACAGGCCTTCCACTATCCGCGATATAGATACAATCATTGTGCTGAAAAATGGTCAGGTTGTTCAGAGTGGCAGCCACTCAGAACTGGTGTGTAAGAAAGGTGAGTATGCTAGTCTGGTGAGCTTGCAGGTATTGGAACATGACAAACGTTCTAGCTCACTATCTCAGTCTATAAGTGCAACAAATGCAAGCTTTCGAGAAAGGAATGATAGAAATCAGCAGGTTGTTAAGTCAATTACAACAAGAGAGCAGGAGCCAAGTGATCAAAAGCTGTCCAAAAGAAGTTCTTCTCCTAGTTCATCAATATGGGAATTAGTAAAACTAAATGCACAGGAGTGGCCTTACGCGATACTCGGGTCAGTTGGTGCAATTCTGGCAGGAATGGAAGCTCCTCTCTTTGCCCTTGGAATAACTCACATCTTGGCTGCATTTTATGCTCCAAATGGTTCCGAAATCAAACATGAGGTTAACAAGGTAATTCTCATGTTTGTTGTACTAGCAGGTATTACTGTTCCAATGTATCTGTTGCAGCACTACTTCTACACATTGATGGGGGAGCGGCTCACAAGTCGTGTGCGCCTATTAATGTTCTCAGCTATCCTTTCAAACGATGTTGGGTGGTTTGATTTGAATGAGAATAACACTGGTTCACTGACATCAATCCTAGTTACCAATGCAACATTAGTCGGAAGCGCTCTAGCTGACCGCCTATCAACAATTGTGCAGAATGTATCACTCGCAGTAACTGCATTTGTTATTGCCTTCACATTAAGTTGGCGACTTGGCGTATCGCAGCTGTTGTGGTTGTTACCCTCCCCCTACTTATTGGAGCTTCCATTGCTGAGCAACTGCTTCTTAAGGGATTTGGTGGAGACTACAACAGTGCTTATGCTAAAGCAACTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

383

Amino Acids

42.01

Weight (kDa)

8.44

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	8 - 53	2.2e-10	ABC transporter
ABC_membrane	PF00664	199 - 344	1.9e-22	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	361, 454, 734
AccBSI	CCGCTC	1 cut(s)	802
AccII	CGCG	2 cut(s)	264, 590
AciI	CCGC	3 cut(s)	262, 802, 949
AclI	AACGTT	1 cut(s)	391
AfaI	GTAC	1 cut(s)	738
AfeI	AGCGCT	1 cut(s)	937
AflII	CTTAAG	1 cut(s)	1099
AgsI	TTSAA	2 cut(s)	849, 874
AhlI	ACTAGT	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	577
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	1109
AlwNI	CAGNNNCTG	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	596
Aor51HI	AGCGCT	1 cut(s)	937
AoxI	GGCC	3 cut(s)	150, 248, 581
ApeKI	GCWGC	4 cut(s)	315, 668, 772, 1036
AseI	ATTAAT	1 cut(s)	827
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	822, 938
AsuHPI	GGTGA	2 cut(s)	356, 373
AvaI	CYCGRG	1 cut(s)	596
BaeI	ACNNNNGTAYC	2 cut(s)	584, 617
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	327, 655, 784, 1048
BccI	CCATC	3 cut(s)	11, 29, 787
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	1109
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	9 cut(s)	78, 156, 354, 396, 537, 740, 908, 941, 1150
BfoI	RGCGCY	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	1099
BfuAI	ACCTGC	3 cut(s)	361, 454, 734
BisI	GCNGC	5 cut(s)	316, 669, 773, 803, 1037
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	5 cut(s)	317, 670, 774, 804, 1038
BmeT110I	CYCGRG	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	498, 691
BmsI	GCATC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	1085
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	646
Bse1I	ACTGG	3 cut(s)	207, 333, 892
Bse3DI	GCAATG	1 cut(s)	1079
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	1079
BseMII	CTCAG	7 cut(s)	62, 83, 110, 336, 422, 849, 1076
BseNI	ACTGG	3 cut(s)	207, 333, 892
BseRI	GAGGAG	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	327, 655, 784, 1048
BsgI	GTGCAG	1 cut(s)	986
Bsh1236I	CGCG	2 cut(s)	264, 590
BshFI	GGCC	3 cut(s)	152, 250, 583
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	596
BsmAI	GTCTC	1 cut(s)	1109
BsnI	GGCC	3 cut(s)	152, 250, 583
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	1085
BspACI	CCGC	3 cut(s)	262, 802, 949
BspANI	GGCC	3 cut(s)	152, 250, 583
BspCNI	CTCAG	7 cut(s)	61, 82, 111, 335, 421, 848, 1077
BspFNI	CGCG	2 cut(s)	264, 590
BspLI	GGNNCC	2 cut(s)	498, 691
BspMI	ACCTGC	3 cut(s)	361, 454, 734
BspTI	CTTAAG	1 cut(s)	1099
BsrBI	CCGCTC	1 cut(s)	802
BsrDI	GCAATG	1 cut(s)	1079
BsrI	ACTGG	3 cut(s)	207, 333, 892
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	754, 1126
BstAFI	CTTAAG	1 cut(s)	1099
BstAPI	GCANNNNNTGC	3 cut(s)	428, 677, 989
BstC8I	GCNNGC	3 cut(s)	198, 368, 433
BstDEI	CTNAG	7 cut(s)	48, 69, 119, 322, 408, 835, 1085
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	264, 590
BstH2I	RGCGCY	1 cut(s)	939
BstHHI	GCGC	2 cut(s)	822, 938
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 428, 617, 677, 989, 1081
BstUI	CGCG	2 cut(s)	264, 590
BstV1I	GCAGC	4 cut(s)	327, 655, 784, 1048
BsuRI	GGCC	3 cut(s)	152, 250, 583
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	4 cut(s)	200, 885, 893, 1131
BveI	ACCTGC	3 cut(s)	361, 454, 734
Cac8I	GCNNGC	3 cut(s)	198, 368, 433
CaiI	CAGNNNCTG	1 cut(s)	989
CfoI	GCGC	2 cut(s)	822, 938
Csp6I	GTAC	1 cut(s)	737
CviAII	CATG	4 cut(s)	214, 383, 704, 727
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	7 cut(s)	48, 69, 119, 322, 408, 835, 1085
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	250
Eco47III	AGCGCT	1 cut(s)	937
Eco88I	CYCGRG	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	4 cut(s)	217, 386, 707, 730
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	4 cut(s)	213, 382, 703, 726
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	5 cut(s)	316, 669, 773, 803, 1037
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	5 cut(s)	316, 669, 773, 803, 1037
FspBI	CTAG	9 cut(s)	78, 156, 354, 396, 537, 740, 908, 941, 1150
GlaI	GCGC	2 cut(s)	821, 937
GluI	GCNGC	5 cut(s)	316, 669, 773, 803, 1037
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	939
HaeIII	GGCC	3 cut(s)	152, 250, 583
HhaI	GCGC	2 cut(s)	822, 938
Hin1II	CATG	4 cut(s)	217, 386, 707, 730
Hin6I	GCGC	2 cut(s)	820, 936
HinP1I	GCGC	2 cut(s)	820, 936
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	1 cut(s)	173
HpaI	GTTAAC	1 cut(s)	712
HphI	GGTGA	2 cut(s)	356, 373
Hpy166II	GTNNAC	3 cut(s)	29, 712, 893
Hpy188I	TCNGA	6 cut(s)	120, 178, 309, 325, 694, 932
Hpy188III	TCNNGA	3 cut(s)	78, 164, 440
Hpy8I	GTNNAC	3 cut(s)	29, 712, 893
HpyAV	CCTTC	2 cut(s)	261, 1015
HpyCH4III	ACNGT	2 cut(s)	754, 1126
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 428, 617, 677, 989, 1081
HpyF3I	CTNAG	7 cut(s)	48, 69, 119, 322, 408, 835, 1085
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	217, 386, 707, 730
HspAI	GCGC	2 cut(s)	820, 936
Ksp22I	TGATCA	1 cut(s)	505
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	5 cut(s)	496, 637, 685, 799, 1072
Lsp1109I	GCAGC	4 cut(s)	327, 655, 784, 1048
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	9 cut(s)	78, 156, 354, 396, 537, 740, 908, 941, 1150
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	4 cut(s)	216, 910, 985, 1050
MalI	GATC	1 cut(s)	507
MbiI	CCGCTC	1 cut(s)	802
MboI	GATC	1 cut(s)	505
MboII	GAAGA	1 cut(s)	522
MfeI	CAATTG	2 cut(s)	102, 960
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	7 cut(s)	102, 186, 477, 554, 612, 720, 960
MmeI	TCCRAC	1 cut(s)	910
MnlI	CCTC	7 cut(s)	52, 56, 74, 142, 645, 700, 1066
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	5 cut(s)	471, 711, 827, 1013, 1100
MslI	CAYNNNNRTG	3 cut(s)	547, 577, 791
MspA1I	CMGCKG	1 cut(s)	1039
MspCI	CTTAAG	1 cut(s)	1099
MunI	CAATTG	2 cut(s)	102, 960
MvnI	CGCG	2 cut(s)	264, 590
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 428, 617, 677, 989, 1081
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	217, 386, 707, 730
NlaIV	GGNNCC	2 cut(s)	498, 691
NmuCI	GTSAC	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	5 cut(s)	317, 670, 774, 804, 1038
PshBI	ATTAAT	1 cut(s)	827
Psp1406I	AACGTT	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	498, 691
PstNI	CAGNNNCTG	1 cut(s)	989
PvuII	CAGCTG	1 cut(s)	1039
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
RseI	CAYNNNNRTG	3 cut(s)	547, 577, 791
SaqAI	TTAA	5 cut(s)	471, 711, 827, 1013, 1100
SatI	GCNGC	5 cut(s)	316, 669, 773, 803, 1037
Sau3AI	GATC	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	3 cut(s)	547, 577, 791
SmlI	CTYRAG	1 cut(s)	1099
SmoI	CTYRAG	1 cut(s)	1099
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	7 cut(s)	102, 186, 477, 554, 612, 720, 960
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	3 cut(s)	262, 802, 949
SspI	AATATT	1 cut(s)	135
SspMI	CTAG	9 cut(s)	78, 156, 354, 396, 537, 740, 908, 941, 1150
StuI	AGGCCT	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	754, 1126
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	439
TasI	AATT	7 cut(s)	102, 186, 477, 554, 612, 720, 960
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	5 cut(s)	471, 711, 827, 1013, 1100
Tru9I	TTAA	5 cut(s)	471, 711, 827, 1013, 1100
TscAI	CASTG	4 cut(s)	207, 892, 900, 1131
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	4 cut(s)	315, 668, 772, 1036
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	531
TspRI	CASTG	4 cut(s)	207, 892, 900, 1131
Vha464I	CTTAAG	1 cut(s)	1099
VspI	ATTAAT	1 cut(s)	827
XbaI	TCTAGA	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	9 cut(s)	78, 156, 354, 396, 537, 740, 908, 941, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.