Rh6CG446200

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001951
Physical Location & Seq
Forward (+)
62447863 .. 62449612
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG446200.1

Sequence Viewer

Length: 654 bp
ATGGAGGAAGTGGAGCTTGCCTCCAAATCCAGTGAGTTTTCGGACAACAACCCGCACTCGAAAACGGACCAACCAATGCATTCAAGCACGCAGAAGCCGTTCGGTGTTTCATTCCTTGGCCTCTTTGCTGCTGCTGACAAAATGGACCATCTGTTAATGCCTTTCGGAAGTTTCGGAGCGTGTATCCATGGTGCTGCACTCCATGTATTCTTTGTCTTGTTTGATGCTTTGTACTTGATCTATCTTGGAATTGTTCTTTTTATATCAGCATGGATAGGTGTTGCATCTTGGACGCGATCGAACTGTTTCGTTGTAGGATTTCACATTGGATTTACATCTGTATGGCAGCTTACACTTCTTACTTTAGTTGTGGTTCCGCTGATAGCTATTGCAGGGGGAGCTTATACCATAATCATGTCCACCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTGCTGAAGAGGTTATTTCACAGATTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCCATTGAAACATACTCTGAGTCACTTAACAAGGCACTCAAACTTGGTAAGAAAAGTGGGGTTGCTAAGGGAGTAGGTGTAGGCTTGACATATGGACTGTTGTTTTGTGCTAGGGCATTGCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

217

Amino Acids

23.34

Weight (kDa)

6.05

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 103 - 215 3.1e-22 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 295
AciI CCGC 2 cut(s) 53, 377
AcuI CTGAAG 2 cut(s) 474, 492
AfaI GTAC 3 cut(s) 233, 496, 503
AgsI TTSAA 2 cut(s) 84, 533
AluBI AGCT 5 cut(s) 16, 349, 386, 401, 458
AluI AGCT 5 cut(s) 16, 349, 386, 401, 458
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 5 cut(s) 128, 131, 194, 346, 443
ArsI GACNNNNNNTTYG 2 cut(s) 612, 644
Asp700I GAANNNNTTC 2 cut(s) 98, 305
AspS9I GGNCC 2 cut(s) 67, 145
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 2 cut(s) 67, 145
BbvI GCAGC 5 cut(s) 115, 118, 181, 358, 430
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 82
BciVI GTATCC 1 cut(s) 194
BfaI CTAG 2 cut(s) 636, 652
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 5 cut(s) 129, 132, 195, 347, 444
BlsI GCNGC 5 cut(s) 130, 133, 196, 348, 445
Bme18I GGWCC 2 cut(s) 67, 145
BmgT120I GGNCC 2 cut(s) 67, 145
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 2 cut(s) 214, 293
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 115, 187
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 115, 187
BseJI GATNNNNATC 1 cut(s) 334
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 5 cut(s) 115, 118, 181, 358, 430
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 299
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 237, 296
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 2 cut(s) 53, 377
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 115, 187
BssMI GATC 2 cut(s) 237, 296
BssT1I CCWWGG 2 cut(s) 115, 187
Bst4CI ACNGT 3 cut(s) 305, 499, 624
Bst6I CTCTTC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 18, 89
BstDEI CTNAG 2 cut(s) 543, 591
BstDSI CCRYGG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 2 cut(s) 240, 299
BstMBI GATC 2 cut(s) 237, 296
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 398, 449
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 115, 118, 181, 358, 430
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 18, 89
Cfr13I GGNCC 2 cut(s) 67, 145
CseI GACGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 232, 495, 502
CviAII CATG 4 cut(s) 188, 203, 270, 415
CviQI GTAC 3 cut(s) 232, 495, 502
DdeI CTNAG 2 cut(s) 543, 591
DpnI GATC 2 cut(s) 239, 298
DpnII GATC 2 cut(s) 237, 296
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 115, 187
Eco47I GGWCC 2 cut(s) 67, 145
Eco57I CTGAAG 2 cut(s) 474, 492
EcoT14I CCWWGG 2 cut(s) 115, 187
EcoT22I ATGCAT 1 cut(s) 81
ErhI CCWWGG 2 cut(s) 115, 187
FaeI CATG 4 cut(s) 191, 206, 273, 418
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 4 cut(s) 187, 202, 269, 414
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 129, 132, 195, 347, 444
Fsp4HI GCNGC 5 cut(s) 129, 132, 195, 347, 444
FspBI CTAG 2 cut(s) 636, 652
GluI GCNGC 5 cut(s) 129, 132, 195, 347, 444
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 1 cut(s) 301
Hin1II CATG 4 cut(s) 191, 206, 273, 418
HinfI GANTC 2 cut(s) 490, 545
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 420, 502
Hpy188I TCNGA 5 cut(s) 43, 167, 176, 430, 544
Hpy8I GTNNAC 2 cut(s) 420, 502
HpyCH4III ACNGT 3 cut(s) 305, 499, 624
HpyCH4V TGCA 4 cut(s) 79, 197, 284, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 449
HpyF3I CTNAG 2 cut(s) 543, 591
Hsp92II CATG 4 cut(s) 191, 206, 273, 418
Kzo9I GATC 2 cut(s) 237, 296
LmnI GCTCC 3 cut(s) 13, 176, 398
LpnPI CCDG 3 cut(s) 43, 378, 444
Lsp1109I GCAGC 5 cut(s) 115, 118, 181, 358, 430
LweI GCATC 2 cut(s) 214, 293
MaeI CTAG 2 cut(s) 636, 652
MaeIII GTNAC 1 cut(s) 546
MalI GATC 2 cut(s) 239, 298
MboI GATC 2 cut(s) 237, 296
MboII GAAGA 1 cut(s) 485
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 5 cut(s) 31, 131, 433, 469, 511
Mph1103I ATGCAT 1 cut(s) 81
MroXI GAANNNNTTC 2 cut(s) 98, 305
MseI TTAA 2 cut(s) 155, 552
MslI CAYNNNNRTG 2 cut(s) 340, 413
MspA1I CMGCKG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 79
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 398, 449
NcoI CCATGG 1 cut(s) 187
NdeI CATATG 1 cut(s) 616
NdeII GATC 2 cut(s) 237, 296
NlaIII CATG 4 cut(s) 191, 206, 273, 418
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 2 cut(s) 98, 305
PfeI GAWTC 1 cut(s) 490
PkrI GCNGC 5 cut(s) 130, 133, 196, 348, 445
Ple19I CGATCG 1 cut(s) 299
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 2 cut(s) 67, 145
PvuI CGATCG 1 cut(s) 299
RsaI GTAC 3 cut(s) 233, 496, 503
RsaNI GTAC 3 cut(s) 232, 495, 502
RseI CAYNNNNRTG 2 cut(s) 340, 413
SaqAI TTAA 2 cut(s) 155, 552
SatI GCNGC 5 cut(s) 129, 132, 195, 347, 444
Sau3AI GATC 2 cut(s) 237, 296
Sau96I GGNCC 2 cut(s) 67, 145
SchI GAGTC 1 cut(s) 554
SfaNI GCATC 2 cut(s) 214, 293
SinI GGWCC 2 cut(s) 67, 145
SmiMI CAYNNNNRTG 2 cut(s) 340, 413
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 53, 377
SspMI CTAG 2 cut(s) 636, 652
StyI CCWWGG 2 cut(s) 115, 187
TaaI ACNGT 3 cut(s) 305, 499, 624
TaqI TCGA 2 cut(s) 59, 299
TasI AATT 1 cut(s) 249
TatI WGTACW 2 cut(s) 231, 501
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 155, 552
Tru9I TTAA 2 cut(s) 155, 552
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 5 cut(s) 128, 131, 194, 346, 443
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 67, 145
XmnI GAANNNNTTC 2 cut(s) 98, 305
XspI CTAG 2 cut(s) 636, 652
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.