Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Forward (+)

63056369 .. 63057855

Gene Structure 1487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGTAACACTAGTTCACTGACATCAATCCTAGCTACCAATGCAACATTAGTCCGAAGTGCTCTAGCTGACCGCCTATCAACAATTGTGCAGATTGTATCACTCGCAGTAACTGCATTTGTTATTGCCTTCACATTAAGTTGGCGTATCGCAGCTGTTGTGGTTGCTACCCTCCCCCTACTTATTGGAGCTTCCATTGCTGAGCAACTGTTTCTTAAGGGATTTGGTGGAGACTACAACAGTGCTTATGCTAAAGCAACTTCCCTAGCTCATGAAGCAATTGCCAACATACGCACTGTTGCTGTATTTGGGGCTGAGGATCGGATATCACTTCAGTTTGCTTCAGAGCTAAACCAGCCAAATAAGAAAGCAGTTCTTCGAGGTCACATTTCCGGTTTTTGCTATGGCCTATCACAGTTCTTTGCATTCTGTTCCTATGCACTCGGCCTTTGGTATGCATCTGTTCTAATCAAGCACAAAAACTCTAATTTTGGCGACATCATGAAGTCCTTTATGGTGTTAATTGTCACTGCAATGTGCATAGCAGAAACTCTTGCTCTTGCTCCAGACATTGTAAAGGGGTCACAAGCACTTGGATTGATTTTTGGTATACTCAACAGAGAAACAGCCATACATTCTAATGATCCCACATCAAATGTGGTTGCTGATATCAGAGGAGACATAGAATTCAGAAATGTGCGGTTTTGGTACCCTGCACGGTCTGATTTCACCATTTTCGACAACTTGAATTTGAAGGTCTCAACAGGAAAGAGTCTTGCAGTTGTCGGTCCAAGTGGTTCAGGGAAGAAAAATAGGACTAGTCCAGCAAGAGCATTGTTCTCAACAACAGTTTATGACAACATCAAATATGGGAATGAGGAAGCATCCGAAGTTGAGGTAATGAGGGCAGCAGAAGCATCAAATGCCCATGAATTCATAAGCAGAATGCCTGAAGGGTTCAAAACTCAAGTTGGAGAGAAAGGAGTGCAGTTATCTGGTGGGCAGAAACGGCGGGTGGCTATTGCTAGAGCTATACTGAAAGACCCATCGATACTTCTTTTAGATGAAGCAACAAGTGCGTTGGACACACAGGCCGAGAAGCTGGTTCGGGAGGCTCTAGATAAGCTAATGGAAGGCCGAACCACCATTTTGGTAGCACACAGGTTGTCAACTGTACGTGATGCAAACAAGATTGCCCTGCTACAAAATGGTAGGGTGGTGGAAATGGGTAGCCATGAGCAGCTGATTGGAACCCCCGGAAGTCTGTATAAACAATTAGTTGGTCTACAGCAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

433

Amino Acids

46.84

Weight (kDa)

8.97

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	3 - 179	1.3e-33	ABC transporter transmembrane region
ABC_tran	PF00005	283 - 359	7.9e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	708
AccB1I	GGYRCC	1 cut(s)	708
AccI	GTMKAC	2 cut(s)	610, 1285
AciI	CCGC	3 cut(s)	73, 700, 1012
AclWI	GGATC	2 cut(s)	327, 638
AcsI	RAATTY	3 cut(s)	686, 748, 932
AcuI	CTGAAG	3 cut(s)	317, 327, 972
AfaI	GTAC	2 cut(s)	710, 1176
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	748, 754, 961
AhlI	ACTAGT	2 cut(s)	11, 818
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	3 cut(s)	225, 672, 763
AlwI	GGATC	2 cut(s)	327, 638
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	4 cut(s)	406, 445, 1092, 1135
ApeKI	GCWGC	3 cut(s)	152, 908, 1240
ApoI	RAATTY	3 cut(s)	686, 748, 932
Asp718I	GGTACC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	788
AsuC2I	CCSGG	1 cut(s)	1257
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	164, 920, 1252
BccI	CCATC	1 cut(s)	1054
BceAI	ACGGC	1 cut(s)	1025
BcnI	CCSGG	1 cut(s)	1257
BcoDI	GTCTC	3 cut(s)	225, 672, 763
BcuI	ACTAGT	2 cut(s)	11, 818
BfaI	CTAG	7 cut(s)	12, 32, 65, 266, 819, 1026, 1118
BfmI	CTRYAG	1 cut(s)	1286
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	153, 909, 1241
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	154, 910, 1242
Bme1390I	CCNGG	1 cut(s)	1257
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	2 cut(s)	710, 1252
BmrFI	CCNGG	1 cut(s)	1257
BmsI	GCATC	4 cut(s)	467, 893, 926, 1171
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	1257
Bsa29I	ATCGAT	1 cut(s)	1049
BsaAI	YACGTR	1 cut(s)	1178
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	1 cut(s)	1255
BsaWI	WCCGGW	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	195, 540
BseCI	ATCGAT	1 cut(s)	1049
BseDI	CCNNGG	1 cut(s)	1255
BseGI	GGATG	1 cut(s)	884
BseMI	GCAATG	2 cut(s)	195, 540
BseMII	CTCAG	2 cut(s)	192, 306
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	164, 920, 1252
BsgI	GTGCAG	3 cut(s)	110, 699, 1007
BshFI	GGCC	4 cut(s)	408, 447, 1094, 1137
BshNI	GGYRCC	1 cut(s)	708
BshVI	ATCGAT	1 cut(s)	1049
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	393, 1257
BsmAI	GTCTC	3 cut(s)	225, 672, 763
BsmI	GAATGC	2 cut(s)	425, 951
BsnI	GGCC	4 cut(s)	408, 447, 1094, 1137
Bso31I	GGTCTC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	319, 643
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	73, 700, 1012
BspANI	GGCC	4 cut(s)	408, 447, 1094, 1137
BspCNI	CTCAG	2 cut(s)	193, 307
BspDI	ATCGAT	1 cut(s)	1049
BspHI	TCATGA	2 cut(s)	271, 501
BspLI	GGNNCC	2 cut(s)	710, 1252
BspPI	GGATC	2 cut(s)	327, 638
BspT107I	GGYRCC	1 cut(s)	708
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	2 cut(s)	195, 540
BssECI	CCNNGG	1 cut(s)	1255
BssMI	GATC	2 cut(s)	319, 643
BssNAI	GTATAC	1 cut(s)	611
Bst1107I	GTATAC	1 cut(s)	611
Bst4CI	ACNGT	7 cut(s)	210, 242, 298, 417, 720, 850, 1174
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	3 cut(s)	113, 923, 1076
BstBAI	YACGTR	1 cut(s)	1178
BstDEI	CTNAG	2 cut(s)	201, 315
BstF5I	GGATG	1 cut(s)	884
BstKTI	GATC	2 cut(s)	322, 646
BstMAI	GTCTC	3 cut(s)	225, 672, 763
BstMBI	GATC	2 cut(s)	319, 643
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 113, 197, 275, 355, 914, 923, 1009, 1076
BstSCI	CCNGG	1 cut(s)	1255
BstSFI	CTRYAG	1 cut(s)	1286
BstV1I	GCAGC	3 cut(s)	164, 920, 1252
BstXI	CCANNNNNNTGG	1 cut(s)	1150
BstZ17I	GTATAC	1 cut(s)	611
Bsu15I	ATCGAT	1 cut(s)	1049
BsuRI	GGCC	4 cut(s)	408, 447, 1094, 1137
BsuTUI	ATCGAT	1 cut(s)	1049
BtsCI	GGATG	1 cut(s)	884
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	4 cut(s)	17, 247, 294, 528
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	2 cut(s)	271, 501
Cfr13I	GGNCC	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	1049
Csp6I	GTAC	2 cut(s)	709, 1175
CviAII	CATG	4 cut(s)	272, 502, 929, 1235
CviQI	GTAC	2 cut(s)	709, 1175
DdeI	CTNAG	2 cut(s)	201, 315
DpnI	GATC	2 cut(s)	321, 645
DpnII	GATC	2 cut(s)	319, 643
Eco31I	GGTCTC	1 cut(s)	763
Eco32I	GATATC	2 cut(s)	327, 670
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	3 cut(s)	317, 327, 972
EcoRI	GAATTC	2 cut(s)	686, 932
EcoRV	GATATC	2 cut(s)	327, 670
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	4 cut(s)	275, 505, 932, 1238
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	4 cut(s)	271, 501, 928, 1234
FauI	CCCGC	1 cut(s)	1005
FblI	GTMKAC	2 cut(s)	610, 1285
Fnu4HI	GCNGC	3 cut(s)	153, 909, 1241
FokI	GGATG	1 cut(s)	871
Fsp4HI	GCNGC	3 cut(s)	153, 909, 1241
FspBI	CTAG	7 cut(s)	12, 32, 65, 266, 819, 1026, 1118
GluI	GCNGC	3 cut(s)	153, 909, 1241
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	4 cut(s)	408, 447, 1094, 1137
HapII	CCGG	2 cut(s)	393, 1257
Hin1II	CATG	4 cut(s)	275, 505, 932, 1238
HincII	GTYRAC	1 cut(s)	1170
HindII	GTYRAC	1 cut(s)	1170
HinfI	GANTC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	393, 1257
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	4 cut(s)	17, 611, 1170, 1286
Hpy188I	TCNGA	7 cut(s)	56, 324, 346, 674, 692, 724, 889
Hpy188III	TCNNGA	5 cut(s)	272, 502, 566, 1109, 1118
Hpy8I	GTNNAC	4 cut(s)	17, 611, 1170, 1286
HpyAV	CCTTC	4 cut(s)	139, 748, 947, 1127
HpyCH4III	ACNGT	7 cut(s)	210, 242, 298, 417, 720, 850, 1174
HpyCH4IV	ACGT	1 cut(s)	1177
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 113, 197, 275, 355, 914, 923, 1009, 1076
HpyF3I	CTNAG	2 cut(s)	201, 315
HpySE526I	ACGT	1 cut(s)	1177
Hsp92II	CATG	4 cut(s)	275, 505, 932, 1238
KpnI	GGTACC	1 cut(s)	712
Kzo9I	GATC	2 cut(s)	319, 643
LmnI	GCTCC	2 cut(s)	188, 568
Lsp1109I	GCAGC	3 cut(s)	164, 920, 1252
LweI	GCATC	4 cut(s)	467, 893, 926, 1171
MaeI	CTAG	7 cut(s)	12, 32, 65, 266, 819, 1026, 1118
MaeII	ACGT	1 cut(s)	1177
MaeIII	GTNAC	5 cut(s)	5, 109, 383, 526, 582
MalI	GATC	2 cut(s)	321, 645
MboI	GATC	2 cut(s)	319, 643
MboII	GAAGA	2 cut(s)	368, 817
MfeI	CAATTG	2 cut(s)	84, 279
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	8 cut(s)	84, 279, 487, 522, 686, 748, 932, 1274
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	2 cut(s)	952, 1062
MnlI	CCTC	9 cut(s)	182, 310, 374, 668, 871, 889, 897, 1105, 1288
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	3 cut(s)	137, 216, 521
MslI	CAYNNNNRTG	2 cut(s)	533, 639
MspA1I	CMGCKG	2 cut(s)	155, 1243
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	2 cut(s)	393, 1257
MspR9I	CCNGG	1 cut(s)	1257
MunI	CAATTG	2 cut(s)	84, 279
Mva1269I	GAATGC	2 cut(s)	425, 951
MwoI	GCNNNNNNNGC	9 cut(s)	41, 113, 197, 275, 355, 914, 923, 1009, 1076
NciI	CCSGG	1 cut(s)	1257
NdeII	GATC	2 cut(s)	319, 643
NlaIII	CATG	4 cut(s)	275, 505, 932, 1238
NlaIV	GGNNCC	2 cut(s)	710, 1252
NmeAIII	GCCGAG	2 cut(s)	423, 1120
NmuCI	GTSAC	3 cut(s)	383, 526, 582
NsiI	ATGCAT	1 cut(s)	460
PagI	TCATGA	2 cut(s)	271, 501
PctI	GAATGC	2 cut(s)	425, 951
PkrI	GCNGC	3 cut(s)	154, 910, 1242
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
Ppu21I	YACGTR	1 cut(s)	1178
PspN4I	GGNNCC	2 cut(s)	710, 1252
PspPI	GGNCC	1 cut(s)	788
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	2 cut(s)	155, 1243
RsaI	GTAC	2 cut(s)	710, 1176
RsaNI	GTAC	2 cut(s)	709, 1175
RseI	CAYNNNNRTG	2 cut(s)	533, 639
SaqAI	TTAA	3 cut(s)	137, 216, 521
SatI	GCNGC	3 cut(s)	153, 909, 1241
Sau3AI	GATC	2 cut(s)	319, 643
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	1 cut(s)	1257
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	4 cut(s)	467, 893, 926, 1171
SfcI	CTRYAG	1 cut(s)	1286
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	533, 639
SmlI	CTYRAG	2 cut(s)	215, 966
SmoI	CTYRAG	2 cut(s)	215, 966
SpeI	ACTAGT	2 cut(s)	11, 818
Sse9I	AATT	8 cut(s)	84, 279, 487, 522, 686, 748, 932, 1274
SsiI	CCGC	3 cut(s)	73, 700, 1012
SspMI	CTAG	7 cut(s)	12, 32, 65, 266, 819, 1026, 1118
StyD4I	CCNGG	1 cut(s)	1255
TaaI	ACNGT	7 cut(s)	210, 242, 298, 417, 720, 850, 1174
TaiI	ACGT	1 cut(s)	1180
TaqI	TCGA	3 cut(s)	379, 738, 1049
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	8 cut(s)	84, 279, 487, 522, 686, 748, 932, 1274
Tru1I	TTAA	3 cut(s)	137, 216, 521
Tru9I	TTAA	3 cut(s)	137, 216, 521
TscAI	CASTG	4 cut(s)	24, 247, 301, 535
TseFI	GTSAC	3 cut(s)	383, 526, 582
TseI	GCWGC	3 cut(s)	152, 908, 1240
Tsp45I	GTSAC	3 cut(s)	383, 526, 582
TspDTI	ATGAA	5 cut(s)	288, 518, 925, 945, 1080
TspRI	CASTG	4 cut(s)	24, 247, 301, 535
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	3 cut(s)	686, 748, 932
XbaI	TCTAGA	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmiI	GTMKAC	2 cut(s)	610, 1285
XspI	CTAG	7 cut(s)	12, 32, 65, 266, 819, 1026, 1118
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.