Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Reverse (-)

67690931 .. 67692831

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG468900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGGAAGTGGAGCTTGCCTCCAAATCCAGTGAGTTTTCGGACAACCCACATCCGAAAATGGACCAACCAGTGCATTCAAACAAGCAGAAGCCGCGCAGTGTTTCATTTCTTGGCCTCTTTGCTGCTGCTGATAAAATGGACTATGTCTTGATGCTTTTCGGAAGTTTCGGAGCGTGTATCCATGGTGCTGCACTTCCTGTATTCTTTGTCTTGTATGGCAGGATGATAGATTCTTTGGGGCATATGGCTAAGCATCCTAACAAAATGTCTTCCCGGATTTCTGAGTATGCTTTGTACTTGATCTATCTTGGAATTGTTCTCTTTATATCAGCATGGATAGGTGTAGCATCTTGGACGCGAACTGGTGAGAGGCAGACAGCTCGTTTGCGATTGAAGTATCTTCAATCAGTTCTAAGGAAGGATATTGATTTTTTCGACACTGAAGCCAGAGACACTAACATCATTTTCCACATTTCAAGTGATGCTATACTAGTCCAAGATGCAATAGGTGACAAGACAGGCCACACTTTGCGTTACCTTTCTCAGTTCATTGTAGGATTTGCCATTGGATTTGCATCGGTGTGGCAGCTTACACTTCTTACCTTAGCTGTGGTTCCACTGATAGCTCTTGCAGGGGGAGCCTATACCATAGTCATGTCAAGCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTGCTGAAGAGGTGATTTCGCAGATTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCAATTGAAACATACTCTCAGTCACTTAACAAGGCACTCAAACTTGGTGAGAAAGGTGGGCTTGCTAAGGGACTAGGTGTAGGCCTTACATACGGACTGTTGTTTTGTGCTTGGGCATTGCTTCTCTGGTATGCCGGCATACTTGTAAGACATCATGACACAAATGGAGGCAAAGCATTTACAACAATCATCAATGTCATCGTCAGTGGATTTGCTCTTGGCCAAGCTACCCCAAACCTGGCTGCCATTTCTAAAGGCCGAGCTGCTGCTGCGAATATCATGAAGATGATTGAATCAGATTCTAACTCCTCTAAAGTATCAGACAAAGGAGTAGTGTTGCCAAAAGTATCAGGGCAGATTGTGTTTTCTGATGCTTGTTTTGCCTATCCATCACGACCCAACATGGTGTTCGAAAACCTGAGCTTTTTTATTAGTGCTGGCAAGACTTTTGCAGTTGTCGGTCCCAGTGGTTCAGGAAAGAGCACAATTAAATCCATGGTTCAACGGTTCTACAACCCCTCTTCAGTTTATGATGCAGCAATGTTTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

440

Amino Acids

47.78

Weight (kDa)

9.07

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	53 - 324	6.2e-54	ABC transporter transmembrane region
ABC_tran	PF00005	394 - 430	7.4e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	97, 361
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	988
AcuI	CTGAAG	4 cut(s)	465, 717, 735, 1275
AfaI	GTAC	3 cut(s)	299, 739, 746
AfiI	CCNNNNNNNGG	1 cut(s)	1006
AgsI	TTSAA	7 cut(s)	81, 397, 407, 480, 776, 1061, 1271
AhlI	ACTAGT	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	1160, 1192
Alw21I	GWGCWC	1 cut(s)	1253
Alw26I	GTCTC	1 cut(s)	447
AoxI	GGCC	5 cut(s)	115, 523, 850, 988, 1024
ArsI	GACNNNNNNTTYG	4 cut(s)	370, 402, 855, 887
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	64, 1229
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	5 cut(s)	380, 524, 692, 733, 827
AsuII	TTCGAA	1 cut(s)	1179
AvaII	GGWCC	2 cut(s)	64, 1229
BalI	TGGCCA	1 cut(s)	990
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	1253
BccI	CCATC	1 cut(s)	1165
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	1007
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	447
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	2 cut(s)	494, 842
BfuI	GTATCC	1 cut(s)	191
BlpI	GCTNAGC	1 cut(s)	252
Bme1390I	CCNGG	2 cut(s)	277, 1007
Bme18I	GGWCC	2 cut(s)	64, 1229
BmgT120I	GGNCC	2 cut(s)	64, 1229
BmiI	GGNNCC	3 cut(s)	618, 643, 1231
BmrFI	CCNGG	2 cut(s)	277, 1007
BmrI	ACTGGG	1 cut(s)	1227
BmsI	GCATC	8 cut(s)	144, 265, 359, 475, 493, 587, 1129, 1291
BmuI	ACTGGG	1 cut(s)	1227
BpiI	GAAGAC	1 cut(s)	264
BplI	GAGNNNNNCTC	1 cut(s)	37
Bpu10I	CCTNAGC	3 cut(s)	607, 834, 1187
Bpu1102I	GCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	1179
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	184, 1263
Bsc4I	CCNNNNNNNGG	1 cut(s)	1006
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	4 cut(s)	30, 71, 370, 1233
Bse3DI	GCAATG	2 cut(s)	884, 1314
Bse8I	GATNNNNATC	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	1007
BseDI	CCNNGG	2 cut(s)	184, 1263
BseGI	GGATG	3 cut(s)	52, 231, 256
BseJI	GATNNNNATC	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	1006
BseMI	GCAATG	2 cut(s)	884, 1314
BseMII	CTCAG	4 cut(s)	276, 560, 800, 1178
BseNI	ACTGG	4 cut(s)	30, 71, 370, 1233
BseRI	GAGGAG	1 cut(s)	1066
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	2 cut(s)	97, 361
BshFI	GGCC	5 cut(s)	117, 525, 852, 990, 1026
BsiHKAI	GWGCWC	1 cut(s)	1253
BsiSI	CCGG	2 cut(s)	277, 903
BslFI	GGGAC	2 cut(s)	852, 1215
BslI	CCNNNNNNNGG	1 cut(s)	1006
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	852, 1215
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	5 cut(s)	117, 525, 852, 990, 1026
Bsp119I	TTCGAA	1 cut(s)	1179
Bsp1286I	GDGCHC	1 cut(s)	1253
Bsp143I	GATC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	2 cut(s)	184, 1263
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	5 cut(s)	117, 525, 852, 990, 1026
BspCNI	CTCAG	4 cut(s)	277, 559, 799, 1179
BspFNI	CGCG	2 cut(s)	97, 361
BspHI	TCATGA	2 cut(s)	922, 1047
BspLI	GGNNCC	3 cut(s)	618, 643, 1231
BspT104I	TTCGAA	1 cut(s)	1179
BsrDI	GCAATG	2 cut(s)	884, 1314
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	4 cut(s)	30, 71, 370, 1233
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	2 cut(s)	184, 1263
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	2 cut(s)	184, 1263
Bst2UI	CCWGG	1 cut(s)	1007
Bst4CI	ACNGT	3 cut(s)	742, 867, 1275
Bst6I	CTCTTC	2 cut(s)	711, 1294
BstBI	TTCGAA	1 cut(s)	1179
BstC8I	GCNNGC	4 cut(s)	18, 831, 904, 1207
BstDEI	CTNAG	8 cut(s)	252, 285, 416, 546, 607, 786, 834, 1187
BstDSI	CCRYGG	2 cut(s)	184, 1263
BstF5I	GGATG	3 cut(s)	52, 231, 256
BstFNI	CGCG	2 cut(s)	97, 361
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 641, 692, 1037, 1148
BstNI	CCWGG	1 cut(s)	1007
BstSCI	CCNGG	2 cut(s)	275, 1005
BstUI	CGCG	2 cut(s)	97, 361
BstV2I	GAAGAC	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	5 cut(s)	117, 525, 852, 990, 1026
BtgI	CCRYGG	2 cut(s)	184, 1263
BtsCI	GGATG	3 cut(s)	52, 231, 256
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	7 cut(s)	37, 78, 106, 441, 620, 979, 1240
Cac8I	GCNNGC	4 cut(s)	18, 831, 904, 1207
CciI	TCATGA	2 cut(s)	922, 1047
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	64, 1229
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	298, 738, 745
CviAII	CATG	7 cut(s)	185, 336, 658, 923, 1048, 1171, 1264
CviQI	GTAC	3 cut(s)	298, 738, 745
DdeI	CTNAG	8 cut(s)	252, 285, 416, 546, 607, 786, 834, 1187
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	988
Eam1104I	CTCTTC	2 cut(s)	711, 1294
EarI	CTCTTC	2 cut(s)	711, 1294
Eco130I	CCWWGG	2 cut(s)	184, 1263
Eco147I	AGGCCT	1 cut(s)	852
Eco47I	GGWCC	2 cut(s)	64, 1229
Eco57I	CTGAAG	4 cut(s)	465, 717, 735, 1275
EcoRII	CCWGG	1 cut(s)	1005
EcoT14I	CCWWGG	2 cut(s)	184, 1263
ErhI	CCWWGG	2 cut(s)	184, 1263
FaeI	CATG	7 cut(s)	188, 339, 661, 926, 1051, 1174, 1267
FalI	AAGNNNNNCTT	3 cut(s)	32, 813, 845
FaqI	GGGAC	2 cut(s)	852, 1215
FatI	CATG	7 cut(s)	184, 335, 657, 922, 1047, 1170, 1263
FauNDI	CATATG	1 cut(s)	246
FokI	GGATG	3 cut(s)	39, 238, 243
FspBI	CTAG	2 cut(s)	494, 842
GlaI	GCGC	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	117, 525, 852, 990, 1026
HapII	CCGG	2 cut(s)	277, 903
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	7 cut(s)	188, 339, 661, 926, 1051, 1174, 1267
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	4 cut(s)	233, 733, 1061, 1067
HpaII	CCGG	2 cut(s)	277, 903
HphI	GGTGA	5 cut(s)	380, 524, 692, 733, 827
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	9 cut(s)	43, 57, 164, 173, 286, 673, 1066, 1090, 1138
Hpy188III	TCNNGA	5 cut(s)	151, 923, 1048, 1161, 1242
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	3 cut(s)	742, 867, 1275
HpyCH4V	TGCA	7 cut(s)	76, 194, 506, 578, 635, 1220, 1304
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 641, 692, 1037, 1148
HpyF3I	CTNAG	8 cut(s)	252, 285, 416, 546, 607, 786, 834, 1187
Hsp92II	CATG	7 cut(s)	188, 339, 661, 926, 1051, 1174, 1267
HspAI	GCGC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	902
KroNI	GCCGGC	1 cut(s)	904
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	13, 173, 641
LweI	GCATC	8 cut(s)	144, 265, 359, 475, 493, 587, 1129, 1291
MaeI	CTAG	2 cut(s)	494, 842
MaeIII	GTNAC	3 cut(s)	512, 536, 789
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	5 cut(s)	264, 395, 728, 1063, 1281
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	1253
MlsI	TGGCCA	1 cut(s)	990
MluCI	AATT	3 cut(s)	315, 771, 1254
MluNI	TGGCCA	1 cut(s)	990
MnlI	CCTC	9 cut(s)	31, 128, 366, 676, 712, 754, 929, 1087, 1297
Mox20I	TGGCCA	1 cut(s)	990
MroNI	GCCGGC	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	990
MseI	TTAA	2 cut(s)	795, 1257
MslI	CAYNNNNRTG	3 cut(s)	583, 656, 1052
Msp20I	TGGCCA	1 cut(s)	990
MspI	CCGG	2 cut(s)	277, 903
MspR9I	CCNGG	2 cut(s)	277, 1007
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	1007
MvnI	CGCG	2 cut(s)	97, 361
MwoI	GCNNNNNNNGC	5 cut(s)	94, 641, 692, 1037, 1148
NaeI	GCCGGC	1 cut(s)	904
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	2 cut(s)	184, 1263
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	1 cut(s)	303
NgoMIV	GCCGGC	1 cut(s)	902
NlaIII	CATG	7 cut(s)	188, 339, 661, 926, 1051, 1174, 1267
NlaIV	GGNNCC	3 cut(s)	618, 643, 1231
NmeAIII	GCCGAG	1 cut(s)	1052
NmuCI	GTSAC	2 cut(s)	512, 789
NspV	TTCGAA	1 cut(s)	1179
PagI	TCATGA	2 cut(s)	922, 1047
PceI	AGGCCT	1 cut(s)	852
PctI	GAATGC	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	233, 733, 1061, 1067
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	1005
PspN4I	GGNNCC	3 cut(s)	618, 643, 1231
PspPI	GGNCC	2 cut(s)	64, 1229
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	299, 739, 746
RsaNI	GTAC	3 cut(s)	298, 738, 745
RseI	CAYNNNNRTG	3 cut(s)	583, 656, 1052
SaqAI	TTAA	2 cut(s)	795, 1257
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	2 cut(s)	64, 1229
ScrFI	CCNGG	2 cut(s)	277, 1007
SduI	GDGCHC	1 cut(s)	1253
SfaNI	GCATC	8 cut(s)	144, 265, 359, 475, 493, 587, 1129, 1291
SfuI	TTCGAA	1 cut(s)	1179
SinI	GGWCC	2 cut(s)	64, 1229
SmiMI	CAYNNNNRTG	3 cut(s)	583, 656, 1052
SpeI	ACTAGT	1 cut(s)	493
Sse9I	AATT	3 cut(s)	315, 771, 1254
SseBI	AGGCCT	1 cut(s)	852
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	494, 842
StuI	AGGCCT	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	275, 1005
StyI	CCWWGG	2 cut(s)	184, 1263
TaaI	ACNGT	3 cut(s)	742, 867, 1275
TaqI	TCGA	2 cut(s)	438, 1179
TaqII	GACCGA	1 cut(s)	1217
TasI	AATT	3 cut(s)	315, 771, 1254
TatI	WGTACW	2 cut(s)	297, 744
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	4 cut(s)	233, 733, 1061, 1067
Tru1I	TTAA	2 cut(s)	795, 1257
Tru9I	TTAA	2 cut(s)	795, 1257
TscAI	CASTG	7 cut(s)	37, 78, 106, 448, 627, 979, 1240
TseFI	GTSAC	2 cut(s)	512, 789
Tsp45I	GTSAC	2 cut(s)	512, 789
TspDTI	ATGAA	4 cut(s)	96, 541, 1064, 1304
TspGWI	ACGGA	1 cut(s)	876
TspRI	CASTG	7 cut(s)	37, 78, 106, 448, 627, 979, 1240
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	64, 1229
XspI	CTAG	2 cut(s)	494, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.