Rh6AG433700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001951
Physical Location & Seq
Forward (+)
62391446 .. 62393545
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG433700.1

Sequence Viewer

Length: 1032 bp
ATGCATTCAAGCACGCAGAAGCCGTTCGGTGTTTCATTCCTTGGCCTCTTTGCTGCTGCTGACAAAATGGACCATCTGTTAATGCTTTTCGGAAGTTTCAGAGCGTGTATCCATGGTGCTGCACTCTCTGCATTCTTTGTCTTGTTTGATGCTTTGTACTTGATCTATCTTGGAATTGTTCTTTTTATATCAGCATGGATAGGTGTTGCATCTTGGACGCAAACTGGTGAAAGGCAGATAGCTCGTTTGCGATTGAAGTGTCTTCAATCAGTTTTAAGAAAGGATATTAATTTTTTCGACACGGAAGCCAGAGACACTAACATCATTTTCCACATTTCAAGTGATGCAATACTAGTCCAAGATGCAATAGGTGACAAGACAGGCCACACTTTGCGCTACCTTTCTCAGTTCGTTGTGGGATTTCACATTGGATTTACATCTGTATGGCAGCTTACACTTCTTACTTTAGTTGTGGTTCCGCTGATAGCTATTGCAGGGGGAGCTTATACCATAATCATGTCCACCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTACTGAAGAGGTTATTTCACAGATTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCCATTGAAACATACTCTGAGTCACTTAACAAGGCACTCAAACTTGGTAAGAAAAGTGGGGTTGCTAAGGGAGTAGGTGTAGGCTTGACATATGGACTGTTGTTTTGTGCTAGGATATTGCTTATCTATGCTGTTGGCCAAGCTACCCCAAACCTGGCTGCCATTTCTAAAGGCAGAGCTGCTGCTGCGAATATTATGAAGATGATTGAATCAGATTCTAACTCCTCTAAAATATTAGACAAGGGAGTAGAGTTGCCAAAAGTATCAGGGCAGATTGAGTTTTTTGATTTGTCGGTCCCAGTGGTTCAGGAAAGAGCACCATTATATCCCTGGTTCAATAATTCAACAACCCCTCTTCAGGTAAAATACTTTTGGATGGACATGATATTTCTACTCTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

343

Amino Acids

37.61

Weight (kDa)

8.3

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 49 - 253 3.8e-42 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 763
AcuI CTGAAG 3 cut(s) 576, 594, 968
AfaI GTAC 3 cut(s) 158, 598, 605
AfiI CCNNNNNNNGG 2 cut(s) 781, 985
AgsI TTSAA 8 cut(s) 9, 256, 266, 339, 635, 836, 964, 972
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 2 cut(s) 780, 956
AluBI AGCT 7 cut(s) 242, 451, 488, 503, 560, 770, 806
AluI AGCT 7 cut(s) 242, 451, 488, 503, 560, 770, 806
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 3 cut(s) 43, 382, 763
ApeKI GCWGC 9 cut(s) 53, 56, 119, 448, 545, 785, 806, 809, 812
ArsI GACNNNNNNTTYG 2 cut(s) 714, 746
AseI ATTAAT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 70, 922
AsuHPI GGTGA 3 cut(s) 239, 383, 551
AvaII GGWCC 2 cut(s) 70, 922
BalI TGGCCA 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 946
BbvI GCAGC 9 cut(s) 40, 43, 106, 460, 532, 772, 793, 796, 799
BccI CCATC 2 cut(s) 81, 997
BceAI ACGGC 1 cut(s) 7
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 782, 958
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 306
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 2 cut(s) 353, 738
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 9 cut(s) 54, 57, 120, 449, 546, 786, 807, 810, 813
BlsI GCNGC 9 cut(s) 55, 58, 121, 450, 547, 787, 808, 811, 814
Bme1390I CCNGG 2 cut(s) 782, 958
Bme18I GGWCC 2 cut(s) 70, 922
BmgT120I GGNCC 2 cut(s) 70, 922
BmiI GGNNCC 2 cut(s) 477, 924
BmrFI CCNGG 2 cut(s) 782, 958
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 4 cut(s) 139, 218, 334, 352
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 436
BsaJI CCNNGG 3 cut(s) 40, 112, 956
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 781, 985
Bse1I ACTGG 2 cut(s) 229, 926
Bse8I GATNNNNATC 1 cut(s) 436
BseBI CCWGG 2 cut(s) 782, 958
BseDI CCNNGG 3 cut(s) 40, 112, 956
BseGI GGATG 1 cut(s) 1008
BseJI GATNNNNATC 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 781, 985
BseMII CTCAG 2 cut(s) 419, 636
BseNI ACTGG 2 cut(s) 229, 926
BseRI GAGGAG 1 cut(s) 841
BseXI GCAGC 9 cut(s) 40, 43, 106, 460, 532, 772, 793, 796, 799
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 3 cut(s) 45, 384, 765
BsiHKAI GWGCWC 1 cut(s) 946
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 2 cut(s) 781, 985
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 908
BsmI GAATGC 2 cut(s) 4, 131
BsnI GGCC 3 cut(s) 45, 384, 765
Bsp1286I GDGCHC 1 cut(s) 946
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 1 cut(s) 479
BspANI GGCC 3 cut(s) 45, 384, 765
BspCNI CTCAG 2 cut(s) 418, 637
BspLI GGNNCC 2 cut(s) 477, 924
BsrI ACTGG 2 cut(s) 229, 926
BssECI CCNNGG 3 cut(s) 40, 112, 956
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 40, 112
Bst2UI CCWGG 2 cut(s) 782, 958
Bst4CI ACNGT 2 cut(s) 601, 726
Bst6I CTCTTC 2 cut(s) 570, 987
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 405, 645, 693
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 1008
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 128, 500, 551, 812
BstNI CCWGG 2 cut(s) 782, 958
BstSCI CCNGG 2 cut(s) 780, 956
BstV1I GCAGC 9 cut(s) 40, 43, 106, 460, 532, 772, 793, 796, 799
BstV2I GAAGAC 1 cut(s) 254
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 3 cut(s) 45, 384, 765
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 1008
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 70, 922
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 157, 597, 604
CviAII CATG 4 cut(s) 113, 195, 517, 1009
CviQI GTAC 3 cut(s) 157, 597, 604
DdeI CTNAG 3 cut(s) 405, 645, 693
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 763
Eam1104I CTCTTC 2 cut(s) 570, 987
EarI CTCTTC 2 cut(s) 570, 987
Eco130I CCWWGG 2 cut(s) 40, 112
Eco47I GGWCC 2 cut(s) 70, 922
Eco57I CTGAAG 3 cut(s) 576, 594, 968
EcoRII CCWGG 2 cut(s) 780, 956
EcoT14I CCWWGG 2 cut(s) 40, 112
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 40, 112
FaeI CATG 4 cut(s) 116, 198, 520, 1012
FaqI GGGAC 1 cut(s) 908
FatI CATG 4 cut(s) 112, 194, 516, 1008
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 9 cut(s) 54, 57, 120, 449, 546, 786, 807, 810, 813
FokI GGATG 1 cut(s) 1015
Fsp4HI GCNGC 9 cut(s) 54, 57, 120, 449, 546, 786, 807, 810, 813
FspBI CTAG 2 cut(s) 353, 738
GlaI GCGC 1 cut(s) 395
GluI GCNGC 9 cut(s) 54, 57, 120, 449, 546, 786, 807, 810, 813
HaeIII GGCC 3 cut(s) 45, 384, 765
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 396
Hin1II CATG 4 cut(s) 116, 198, 520, 1012
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 4 cut(s) 592, 647, 836, 842
HphI GGTGA 3 cut(s) 239, 383, 551
Hpy166II GTNNAC 2 cut(s) 522, 604
Hpy188I TCNGA 5 cut(s) 92, 101, 532, 646, 841
Hpy188III TCNNGA 1 cut(s) 935
Hpy8I GTNNAC 2 cut(s) 522, 604
HpyCH4III ACNGT 2 cut(s) 601, 726
HpyCH4V TGCA 7 cut(s) 4, 122, 131, 209, 347, 365, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 500, 551, 812
HpyF3I CTNAG 3 cut(s) 405, 645, 693
Hsp92II CATG 4 cut(s) 116, 198, 520, 1012
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 9 cut(s) 40, 43, 106, 460, 532, 772, 793, 796, 799
LweI GCATC 4 cut(s) 139, 218, 334, 352
MaeI CTAG 2 cut(s) 353, 738
MaeIII GTNAC 3 cut(s) 371, 568, 648
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 4 cut(s) 254, 587, 838, 974
MfeI CAATTG 1 cut(s) 1027
MhlI GDGCHC 1 cut(s) 946
MlsI TGGCCA 1 cut(s) 765
MluCI AATT 4 cut(s) 174, 289, 967, 1027
MluNI TGGCCA 1 cut(s) 765
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 6 cut(s) 56, 535, 571, 613, 862, 990
Mox20I TGGCCA 1 cut(s) 765
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 765
MseI TTAA 4 cut(s) 80, 275, 288, 654
MslI CAYNNNNRTG 2 cut(s) 442, 515
Msp20I TGGCCA 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 2 cut(s) 782, 958
MunI CAATTG 1 cut(s) 1027
Mva1269I GAATGC 2 cut(s) 4, 131
MvaI CCWGG 2 cut(s) 782, 958
MwoI GCNNNNNNNGC 4 cut(s) 128, 500, 551, 812
NcoI CCATGG 1 cut(s) 112
NdeI CATATG 1 cut(s) 718
NdeII GATC 1 cut(s) 162
NlaIII CATG 4 cut(s) 116, 198, 520, 1012
NlaIV GGNNCC 2 cut(s) 477, 924
NmuCI GTSAC 2 cut(s) 371, 648
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 2 cut(s) 4, 131
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 592, 836, 842
PkrI GCNGC 9 cut(s) 55, 58, 121, 450, 547, 787, 808, 811, 814
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 780, 956
PspGI CCWGG 2 cut(s) 780, 956
PspN4I GGNNCC 2 cut(s) 477, 924
PspPI GGNCC 2 cut(s) 70, 922
RsaI GTAC 3 cut(s) 158, 598, 605
RsaNI GTAC 3 cut(s) 157, 597, 604
RseI CAYNNNNRTG 2 cut(s) 442, 515
SaqAI TTAA 4 cut(s) 80, 275, 288, 654
SatI GCNGC 9 cut(s) 54, 57, 120, 449, 546, 786, 807, 810, 813
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 70, 922
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 2 cut(s) 782, 958
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 4 cut(s) 139, 218, 334, 352
SinI GGWCC 2 cut(s) 70, 922
SmiMI CAYNNNNRTG 2 cut(s) 442, 515
SpeI ACTAGT 1 cut(s) 352
Sse9I AATT 4 cut(s) 174, 289, 967, 1027
SsiI CCGC 1 cut(s) 479
SspI AATATT 2 cut(s) 820, 861
SspMI CTAG 2 cut(s) 353, 738
StyD4I CCNGG 2 cut(s) 780, 956
StyI CCWWGG 2 cut(s) 40, 112
TaaI ACNGT 2 cut(s) 601, 726
TaqI TCGA 1 cut(s) 297
TaqII GACCGA 1 cut(s) 910
TasI AATT 4 cut(s) 174, 289, 967, 1027
TatI WGTACW 2 cut(s) 156, 603
TfiI GAWTC 3 cut(s) 592, 836, 842
Tru1I TTAA 4 cut(s) 80, 275, 288, 654
Tru9I TTAA 4 cut(s) 80, 275, 288, 654
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 2 cut(s) 371, 648
TseI GCWGC 9 cut(s) 53, 56, 119, 448, 545, 785, 806, 809, 812
Tsp45I GTSAC 2 cut(s) 371, 648
TspDTI ATGAA 2 cut(s) 24, 839
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 70, 922
VspI ATTAAT 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 954
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 353, 738
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.