Rh6BG468700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001951
Physical Location & Seq
Reverse (-)
67688573 .. 67689217
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG468700.1

Sequence Viewer

Length: 645 bp
ATGAAGTCCTTTATGGTGTTAATTGTCACTGCAATGTGCATAGCAGAAACTCTTGCTCTTGCTCCAGACATTGTAAAGGGGTCACAAGCACTTGGATTGATTTTTAGTATACTCAACAGAGAAACAGCCATACATTCTAATGATCCCACATCAAATGTGGTTGCTGATATCAGAGGAGACATAGAATTCAGAAATGTGCGGTTTTGGTACCCTGCACGGTTTGATATCACCATTTTCGACAACTTGAATTTGAAGGTGTCAGCAGGGAAGAGTCTTGCAGTTGTCGGTCCAAGTGGTTCAGGGAAGAGTACTCTGATTGCACTAGTAATGAGATTTTATGACCCTATTTTAGGAGCAGTTATGATTGATGGACATGATATCAAAGGCTTAAACTTGAAATCTTTGAGGAAGAAAATAGGACTAGTCCAGCAAGAGCCAGCATTGTTCTCAACAACAGTTTATGACAACATCAAATATGGGAATGAGGAAGCATCCGAAGTTGAGGTAATGAGGGCAGCAGAAGCAGCAAATGCCCATGAATTCATAAGCAGAATGCCTGAAGGGTTCAAAACTCAAGTTGGAGAGAAAGGGTGCAGTTATCTGGTGGGCAGAAACAGCGGGTGGCTATTGCTAGAGCTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

214

Amino Acids

23.48

Weight (kDa)

6.32

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 80 - 185 7.6e-20 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 109
AciI CCGC 2 cut(s) 199, 618
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 3 cut(s) 185, 247, 539
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 2 cut(s) 209, 310
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 4 cut(s) 247, 253, 397, 568
AhlI ACTAGT 2 cut(s) 322, 421
AluBI AGCT 1 cut(s) 637
AluI AGCT 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 515, 524
ApoI RAATTY 3 cut(s) 185, 247, 539
Asp718I GGTACC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 527, 536
BccI CCATC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 2 cut(s) 322, 421
BfaI CTAG 3 cut(s) 323, 422, 632
BisI GCNGC 2 cut(s) 516, 525
BlsI GCNGC 2 cut(s) 517, 526
BmcAI AGTACT 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 527, 536
BsgI GTGCAG 2 cut(s) 198, 613
BshNI GGYRCC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 558
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 2 cut(s) 199, 618
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 39
BssMI GATC 1 cut(s) 142
BssNAI GTATAC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 219, 457
Bst6I CTCTTC 2 cut(s) 263, 299
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 4 cut(s) 521, 524, 530, 615
BstV1I GCAGC 2 cut(s) 527, 536
BstZ17I GTATAC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 491
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 208, 309
CviAII CATG 2 cut(s) 374, 536
CviJI RGCY 5 cut(s) 128, 387, 436, 625, 637
CviKI_1 RGCY 5 cut(s) 128, 387, 436, 625, 637
CviQI GTAC 2 cut(s) 208, 309
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 263, 299
EarI CTCTTC 2 cut(s) 263, 299
Eco32I GATATC 3 cut(s) 169, 226, 379
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 579
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRI GAATTC 2 cut(s) 185, 539
EcoRV GATATC 3 cut(s) 169, 226, 379
FaeI CATG 2 cut(s) 377, 539
FatI CATG 2 cut(s) 373, 535
FauI CCCGC 1 cut(s) 611
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 516, 525
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 516, 525
FspBI CTAG 3 cut(s) 323, 422, 632
GluI GCNGC 2 cut(s) 516, 525
GsuI CTGGAG 1 cut(s) 48
Hin1II CATG 2 cut(s) 377, 539
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 4 cut(s) 173, 191, 315, 496
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 247, 554
HpyCH4III ACNGT 2 cut(s) 219, 457
HpyCH4V TGCA 6 cut(s) 32, 39, 215, 278, 320, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 521, 524, 530, 615
Hsp92II CATG 2 cut(s) 377, 539
KpnI GGTACC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 67, 353
LpnPI CCDG 8 cut(s) 78, 225, 249, 285, 440, 450, 570, 587
Lsp1109I GCAGC 2 cut(s) 527, 536
LweI GCATC 1 cut(s) 500
MaeI CTAG 3 cut(s) 323, 422, 632
MaeIII GTNAC 2 cut(s) 25, 81
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 280, 316, 421
MluCI AATT 4 cut(s) 21, 185, 247, 539
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 5 cut(s) 167, 399, 478, 496, 504
MseI TTAA 2 cut(s) 20, 389
MslI CAYNNNNRTG 2 cut(s) 32, 138
MspA1I CMGCKG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 558
MwoI GCNNNNNNNGC 4 cut(s) 521, 524, 530, 615
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 377, 539
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 25, 81
PctI GAATGC 1 cut(s) 558
PkrI GCNGC 2 cut(s) 517, 526
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 2 cut(s) 209, 310
RsaNI GTAC 2 cut(s) 208, 309
RseI CAYNNNNRTG 2 cut(s) 32, 138
SaqAI TTAA 2 cut(s) 20, 389
SatI GCNGC 2 cut(s) 516, 525
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 280
SetI ASST 3 cut(s) 258, 507, 639
SfaNI GCATC 1 cut(s) 500
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 32, 138
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
SpeI ACTAGT 2 cut(s) 322, 421
Sse9I AATT 4 cut(s) 21, 185, 247, 539
SsiI CCGC 2 cut(s) 199, 618
SspMI CTAG 3 cut(s) 323, 422, 632
TaaI ACNGT 2 cut(s) 219, 457
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 275
TasI AATT 4 cut(s) 21, 185, 247, 539
TatI WGTACW 1 cut(s) 308
Tru1I TTAA 2 cut(s) 20, 389
Tru9I TTAA 2 cut(s) 20, 389
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 25, 81
TseI GCWGC 2 cut(s) 515, 524
Tsp45I GTSAC 2 cut(s) 25, 81
TspDTI ATGAA 3 cut(s) 17, 532, 552
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 3 cut(s) 185, 247, 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 3 cut(s) 323, 422, 632
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.