Rorug06G0319800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001951
Physical Location & Seq
Reverse (-)
47161856 .. 47166410
4555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0319800.1

Sequence Viewer

Length: 1086 bp
ATGAATTACTTGTACCCAGTGAAGGAAGAGTACCCGGGCGGGTCGGGTTCGTCGCAGTGGAGCGGGGATCCTCCGATGATGGTGGCTCCACCGCAGCCGATGGAGGGGCTGAATGACACCGGGCCTCCTCCTTTTCTGAACAAGACTTATGACATGGTGGATGACCCGAGTACTAATCGGATAGTCTCGTGGAGCAGAGGAGGGAGCAGCTTTGTGGTTTGGGACCCTCATTCGTTTGTGATGAACCTCCTGCCTAGATACTTCAAGCACAATAATTTCTCCAGCTTTGTCAGGCAGCTTAACACTTACGGCTTTAGAAAGGTTGATCCGGATAGGTGGGAGTTTGCCAATGAAGGATTTTTACGGGGTCAGAAGCATCTCCTAAAGAACATTAGGAGAAGGAAGACACCTTCTCAGCCTATTCCAGCACACCAAGCCCTAGGCCCTTGTGTGGAAGTAGGCCGGTTTGGGCTAGATGGAGAAATTGATCGTTTGCGACGTGACAAGCAGGTTCTCATGATGGAGTTGGTGAAGCTTAGACAGCAGCAGCAGAGTACTAGAGCTTGCCTTCAAGCCATGGAACAAAGGCTAAAAGGGACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTGGCCAGGGCACTGCAGAACCCGGCTTTCCTGCAGCAGCTAGTCCAACATAAGGAGAAACGGAAGGAACTTGAAGAAGCCGTGACTAAGAAAAGGAGAAGGCCGATTGATCAAGGCCCTAGTGGCTTTGGTGGTGGTGAAACTAACCAAAGGGGCAAAGGAATTAACCCTGTTAAAGCTGAGCCTCTTGAATTTGGAGATGGCGAGTACAAAATGTCGGAGCTAGAAGCGCTTGCAATGGAAATGCAAGGATTTCATAAGGCAAGAAAGGAACCAGAGGAAGAGTCAGAGCCCCTGGAAATTGGGGATAAAGAGCTTGATGAAGGATTTTGGGATGAACTATTTAGCGAGAGGTTTGAGGGGGACTTAAGCATACCATGTGCTGAAATAGGTGATGACGAAGATGTCATTATCTTGGCTGATCGCTTAGGTTACTTAGGTTCAAGCCCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

361

Amino Acids

41.18

Weight (kDa)

5.6

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 45 - 134 8.9e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
Acc36I ACCTGC 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 39, 63, 92
AclWI GGATC 3 cut(s) 62, 75, 320
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 1 cut(s) 821
AfaI GTAC 5 cut(s) 14, 32, 172, 556, 839
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 4 cut(s) 22, 104, 451, 682
AflII CTTAAG 1 cut(s) 997
AgsI TTSAA 5 cut(s) 265, 572, 704, 821, 1074
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 2 cut(s) 635, 924
AluBI AGCT 9 cut(s) 210, 285, 298, 535, 563, 670, 809, 853, 946
AluI AGCT 9 cut(s) 210, 285, 298, 535, 563, 670, 809, 853, 946
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 62, 75, 320
Ama87I CYCGRG 2 cut(s) 34, 166
Aor13HI TCCGGA 1 cut(s) 328
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 6 cut(s) 122, 442, 460, 633, 731, 745
ApeKI GCWGC 8 cut(s) 94, 207, 295, 544, 547, 610, 664, 667
ApoI RAATTY 1 cut(s) 821
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 4 cut(s) 122, 223, 443, 746
AsuC2I CCSGG 4 cut(s) 35, 36, 121, 653
AsuHPI GGTGA 3 cut(s) 541, 779, 1034
AvaI CYCGRG 2 cut(s) 34, 166
AvaII GGWCC 1 cut(s) 223
AvrII CCTAGG 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 924
BarI GAAGNNNNNNTAC 4 cut(s) 14, 46, 345, 377
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BccI CCATC 6 cut(s) 73, 94, 470, 514, 616, 824
BceAI ACGGC 2 cut(s) 325, 695
BciT130I CCWGG 2 cut(s) 637, 926
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 4 cut(s) 35, 36, 121, 653
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
BfmI CTRYAG 2 cut(s) 644, 662
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 997
BfuAI ACCTGC 1 cut(s) 499
BglI GCCNNNNNGGC 1 cut(s) 753
BisI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
BlnI CCTAGG 1 cut(s) 439
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 8 cut(s) 96, 209, 297, 546, 549, 612, 666, 669
BmcAI AGTACT 2 cut(s) 172, 556
Bme1390I CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 2 cut(s) 34, 166
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 4 cut(s) 122, 223, 443, 746
BmiI GGNNCC 5 cut(s) 69, 87, 224, 225, 903
BmrFI CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 1057
Bpu1102I GCTNAGC 1 cut(s) 810
BpuMI CCSGG 4 cut(s) 35, 36, 121, 653
BsaJI CCNNGG 5 cut(s) 34, 439, 576, 636, 924
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 104, 451, 682
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 637, 926
BseDI CCNNGG 5 cut(s) 34, 439, 576, 636, 924
BseGI GGATG 2 cut(s) 166, 970
BseLI CCNNNNNNNGG 4 cut(s) 22, 104, 451, 682
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 2 cut(s) 428, 801
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 117, 213
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BshFI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BsiHKCI CYCGRG 2 cut(s) 34, 166
BsiSI CCGG 5 cut(s) 35, 120, 329, 463, 653
BslFI GGGAC 3 cut(s) 236, 610, 1007
BslI CCNNNNNNNGG 4 cut(s) 22, 104, 451, 682
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 3 cut(s) 236, 610, 1007
BsnI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BsoBI CYCGRG 2 cut(s) 34, 166
Bsp1286I GDGCHC 2 cut(s) 643, 924
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 67, 325, 487, 739, 1051
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 39, 63, 92
BspANI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BspCNI CTCAG 2 cut(s) 427, 802
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 5 cut(s) 69, 87, 224, 225, 903
BspMAI CTGCAG 2 cut(s) 648, 666
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 62, 75, 320
BspTI CTTAAG 1 cut(s) 997
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 5 cut(s) 34, 439, 576, 636, 924
BssMI GATC 5 cut(s) 67, 325, 487, 739, 1051
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 2 cut(s) 439, 576
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 637, 926
Bst6I CTCTTC 2 cut(s) 21, 906
BstAFI CTTAAG 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 565, 864
BstDEI CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 166, 970
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 5 cut(s) 70, 328, 490, 742, 1054
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 5 cut(s) 67, 325, 487, 739, 1051
BstMWI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
BstNI CCWGG 2 cut(s) 637, 926
BstSCI CCNGG 6 cut(s) 33, 34, 119, 635, 651, 924
BstSFI CTRYAG 2 cut(s) 644, 662
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
BtgI CCRYGG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 166, 970
BtsI GCAGTG 2 cut(s) 62, 641
BtsIMutI CAGTG 3 cut(s) 24, 62, 641
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 565, 864
CciI TCATGA 1 cut(s) 516
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 4 cut(s) 122, 223, 443, 746
Cfr9I CCCGGG 1 cut(s) 34
Csp6I GTAC 5 cut(s) 13, 31, 171, 555, 838
CviAII CATG 4 cut(s) 154, 517, 577, 1008
CviQI GTAC 5 cut(s) 13, 31, 171, 555, 838
DdeI CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
DpnI GATC 5 cut(s) 69, 327, 489, 741, 1053
DpnII GATC 5 cut(s) 67, 325, 487, 739, 1051
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 21, 906
EarI CTCTTC 2 cut(s) 21, 906
Eco130I CCWWGG 2 cut(s) 439, 576
Eco24I GRGCYC 1 cut(s) 924
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 34, 166
EcoO109I RGGNCCY 3 cut(s) 223, 443, 746
EcoRII CCWGG 2 cut(s) 635, 924
EcoT14I CCWWGG 2 cut(s) 439, 576
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 2 cut(s) 439, 576
FaeI CATG 4 cut(s) 157, 520, 580, 1011
FaiI YATR 8 cut(s) 150, 155, 518, 578, 681, 888, 1004, 1009
FaqI GGGAC 3 cut(s) 236, 610, 1007
FatI CATG 4 cut(s) 153, 516, 576, 1007
FauI CCCGC 2 cut(s) 32, 56
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
FokI GGATG 2 cut(s) 173, 977
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
FspBI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
GlaI GCGC 1 cut(s) 861
GluI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
GsuI CTGGAG 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 6 cut(s) 124, 444, 462, 635, 733, 747
HapII CCGG 5 cut(s) 35, 120, 329, 463, 653
HhaI GCGC 1 cut(s) 862
Hin1II CATG 4 cut(s) 157, 520, 580, 1011
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 914
HpaII CCGG 5 cut(s) 35, 120, 329, 463, 653
HphI GGTGA 3 cut(s) 541, 779, 1034
Hpy188I TCNGA 6 cut(s) 75, 138, 180, 372, 850, 919
Hpy188III TCNNGA 3 cut(s) 329, 517, 818
Hpy99I CGWCG 2 cut(s) 55, 501
HpyAV CCTTC 8 cut(s) 16, 347, 393, 420, 578, 688, 723, 947
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 4 cut(s) 646, 664, 866, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
HpyF3I CTNAG 6 cut(s) 414, 536, 717, 810, 1057, 1066
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 4 cut(s) 157, 520, 580, 1011
HspAI GCGC 1 cut(s) 860
KflI GGGWCCC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 5 cut(s) 67, 325, 487, 739, 1051
LmnI GCTCC 5 cut(s) 60, 91, 192, 204, 850
Lsp1109I GCAGC 8 cut(s) 106, 219, 307, 556, 559, 622, 676, 679
LweI GCATC 1 cut(s) 385
MaeI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 500, 712, 1061
MalI GATC 5 cut(s) 69, 327, 489, 741, 1053
MbiI CCGCTC 1 cut(s) 63
MboI GATC 5 cut(s) 67, 325, 487, 739, 1051
MboII GAAGA 5 cut(s) 38, 415, 716, 923, 1043
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 643, 924
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 2 cut(s) 700, 828
Mox20I TGGCCA 1 cut(s) 635
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 635
MseI TTAA 4 cut(s) 300, 795, 804, 998
Msp20I TGGCCA 1 cut(s) 635
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 5 cut(s) 35, 120, 329, 463, 653
MspR9I CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
MvaI CCWGG 2 cut(s) 637, 926
MwoI GCNNNNNNNGC 5 cut(s) 434, 541, 632, 753, 859
NciI CCSGG 4 cut(s) 35, 36, 121, 653
NcoI CCATGG 1 cut(s) 576
NdeII GATC 5 cut(s) 67, 325, 487, 739, 1051
NlaIII CATG 4 cut(s) 157, 520, 580, 1011
NlaIV GGNNCC 5 cut(s) 69, 87, 224, 225, 903
NmuCI GTSAC 2 cut(s) 500, 712
PagI TCATGA 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PkrI GCNGC 8 cut(s) 96, 209, 297, 546, 549, 612, 666, 669
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 635, 924
PspGI CCWGG 2 cut(s) 635, 924
PspN4I GGNNCC 5 cut(s) 69, 87, 224, 225, 903
PspPI GGNCC 4 cut(s) 122, 223, 443, 746
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 2 cut(s) 648, 666
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 5 cut(s) 14, 32, 172, 556, 839
RsaNI GTAC 5 cut(s) 13, 31, 171, 555, 838
SaqAI TTAA 4 cut(s) 300, 795, 804, 998
SatI GCNGC 8 cut(s) 95, 208, 296, 545, 548, 611, 665, 668
Sau3AI GATC 5 cut(s) 67, 325, 487, 739, 1051
Sau96I GGNCC 4 cut(s) 122, 223, 443, 746
ScaI AGTACT 2 cut(s) 172, 556
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 6 cut(s) 35, 36, 121, 637, 653, 926
SduI GDGCHC 2 cut(s) 643, 924
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 644, 662
SinI GGWCC 1 cut(s) 223
SmaI CCCGGG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
SsiI CCGC 3 cut(s) 39, 63, 92
SspMI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
StyD4I CCNGG 6 cut(s) 33, 34, 119, 635, 651, 924
StyI CCWWGG 2 cut(s) 439, 576
TaiI ACGT 1 cut(s) 502
TasI AATT 7 cut(s) 4, 274, 483, 792, 821, 930, 1081
TatI WGTACW 3 cut(s) 170, 554, 837
Tru1I TTAA 4 cut(s) 300, 795, 804, 998
Tru9I TTAA 4 cut(s) 300, 795, 804, 998
TscAI CASTG 3 cut(s) 24, 62, 648
TseFI GTSAC 2 cut(s) 500, 712
TseI GCWGC 8 cut(s) 94, 207, 295, 544, 547, 610, 664, 667
Tsp45I GTSAC 2 cut(s) 500, 712
TspDTI ATGAA 7 cut(s) 17, 257, 366, 620, 875, 966, 981
TspGWI ACGGA 1 cut(s) 706
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 3 cut(s) 24, 62, 648
Vha464I CTTAAG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 821
XmaI CCCGGG 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 7 cut(s) 255, 440, 473, 558, 671, 750, 854
ZrmI AGTACT 2 cut(s) 172, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.