Rroxscaffold_7G00164910

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001951
Physical Location & Seq
Reverse (-)
6793765 .. 6797186
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164910.1

Sequence Viewer

Length: 1608 bp
ATGGGATTGGTAAGTCAAGAACCAGCATTGTTTGCTACTACTATAGCTGACAACATCCTGTTGGGTAAAGAAGACGCCGACATGGATGAGATCATAGAAGCTGCCAATGCACATTCTTTTATTCAAGGTTTACCTGATGGCTACAACACTCAGGCTGGAGAGGGAGGAACTCAGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCGAGAGCAGTTCTGAGAAACCCGAAAATATTACTCTTGGATGAGGCCACTAGTGCTCTTGATGCAGAATCAGAACAAATTGTTCAGCAAGCACTGGATAAAATCATGTCACATAGAACTACAATCATTGTTGCTCACAGGCTTTCCACTCTCCGCAATGTGGATACAATCATTGTGCTGGAAAAATGGTCAGGTTGTTCTGAGTGGCAGCCACTCAGAACTGACTACAACAGTGCTTATGCTAAAGCAACTTCACTAGCTCGTGAAGCAATTGCCAGCTTACGCACTGTTGCTGCATTTGGGGCTGAGGATCGGATATCACTTCAGTTTGCTTCAGAGCTAAACCAGCCAAATAAGAAAGCAGTTCTTCGAGGTCACATTTCTGGTTTTTGCTATGGCCTATCACAGTTCTTTGCATTCTGTTGCTATGCACTCGGCCTTTGGTATGTATCAGTTCTAATCAAGCACAAAAACTCTAATTTTGGAGACATCATGAAGTCCTTTATGGTGTTAATTGTCACTGCAATGTGCATAGCAGAAACTCTTGCTTTTGCTCCAGACACTGTAAAGAGGTCACAAGCACTTGGATTGATTTTTAGTATACTCAACAGAGAAACAGCCATACATTCTAATGATCCCACATCAAATGTGGTTGCTGATATCAGAGGAGACATAGAATTCAGAAATGTGCGGTTTTGGTACCCTGCACGGTCTGATATCACCATTTTTGACAACTTGAATTTGAAGGTGTCAGCAGGAAAGAGTCTTGCAGTTGTTGGTCCAAGTGGTTCAGGGAAGAGTACTCTGATTGCACTAGTAATGAGATTTTATGACCCTATTTTCGGTGCAGTTATGATTGATGGACATGATATCAAAGGCTTAAACTTGAAATCTTTGAGGAAGAAAATAGGACTAGTCCAGCAAGAGCCAGCATTGTTCTCAACAACAGTTTATGACAACATCAATTATGGGAATGAGGAAGCATCCGAAGTTGAGGTAATGAGGGCAGCAGAAGCAGCAAATGCCCATGAATTCATGAGCAGAATGCCTGAAGGGTTCAAAACTCAAGTTGGAGGGAAAGGAGTGCAGTTATCTGGTGGGCAGAAACAGCGGGTGGCTATTGCTAGAGCTATACTGAAAGACCCATCGATACTTCTTTTAGATGAAGCAACAAGTGCGTTGGACACAGAGTCCGAGAAGCTGGTTCAGGAGGCTCTAGATAAGCTAATGGAAGGCCGAACCACCATTTTGGTAGCACACAGGTTGTCAACTATTCGTGATGCAAACAAGATTGCCCTGCTACAAAATGGTAGGGTGGTGGAAATGGGTAGCCATAAGCAGCTGATTGGAACCCCCGGAAGTCTGTATAAACAATTAGTTTGTCTACAGCAAGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

535

Amino Acids

58.45

Weight (kDa)

6.25

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 87 2.7e-13 ABC transporter
ABC_membrane PF00664 139 - 245 1e-18 ABC transporter transmembrane region
ABC_tran PF00005 313 - 461 1.6e-34 ABC transporter
SMC_N PF02463 325 - 501 6.3e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 906
AccI GTMKAC 2 cut(s) 808, 1591
AciI CCGC 3 cut(s) 361, 898, 1318
AclWI GGATC 2 cut(s) 525, 836
AcsI RAATTY 3 cut(s) 884, 946, 1238
AcuI CTGAAG 3 cut(s) 515, 525, 1278
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 908, 1009
AfiI CCNNNNNNNGG 2 cut(s) 367, 1049
AgsI TTSAA 5 cut(s) 125, 946, 952, 1096, 1267
AhdI GACNNNNNGTC 1 cut(s) 1396
AhlI ACTAGT 3 cut(s) 257, 1021, 1120
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 687, 870
AlwI GGATC 2 cut(s) 525, 836
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 4 cut(s) 252, 604, 643, 1441
ApeKI GCWGC 6 cut(s) 101, 415, 500, 1214, 1223, 1546
ApoI RAATTY 3 cut(s) 884, 946, 1238
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
Asp718I GGTACC 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 1563
AsuHPI GGTGA 1 cut(s) 919
AvaII GGWCC 1 cut(s) 986
BanI GGYRCC 1 cut(s) 906
BauI CACGAG 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 6 cut(s) 88, 427, 487, 1226, 1235, 1558
BccI CCATC 3 cut(s) 131, 1061, 1360
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 1563
BcoDI GTCTC 2 cut(s) 687, 870
BcuI ACTAGT 3 cut(s) 257, 1021, 1120
BfaI CTAG 6 cut(s) 258, 464, 1022, 1121, 1332, 1424
BfmI CTRYAG 2 cut(s) 42, 1592
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 6 cut(s) 102, 416, 501, 1215, 1224, 1547
BlsI GCNGC 6 cut(s) 103, 417, 502, 1216, 1225, 1548
BmcAI AGTACT 1 cut(s) 1009
Bme1390I CCNGG 1 cut(s) 1563
Bme18I GGWCC 1 cut(s) 986
BmeRI GACNNNNNGTC 1 cut(s) 1396
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 2 cut(s) 908, 1558
BmrFI CCNGG 1 cut(s) 1563
BmsI GCATC 3 cut(s) 259, 1199, 1477
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 3 cut(s) 177, 201, 747
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 1257
BpuMI CCSGG 1 cut(s) 1563
Bsa29I ATCGAT 1 cut(s) 1355
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 1561
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 1049
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 370, 738
BseCI ATCGAT 1 cut(s) 1355
BseDI CCNNGG 1 cut(s) 1561
BseGI GGATG 4 cut(s) 54, 91, 253, 1190
BseLI CCNNNNNNNGG 2 cut(s) 367, 1049
BseMI GCAATG 2 cut(s) 370, 738
BseMII CTCAG 6 cut(s) 164, 185, 212, 399, 436, 504
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 888
BseXI GCAGC 6 cut(s) 88, 427, 487, 1226, 1235, 1558
BsgI GTGCAG 3 cut(s) 897, 1074, 1313
BshFI GGCC 4 cut(s) 254, 606, 645, 1443
BshNI GGYRCC 1 cut(s) 906
BshVI ATCGAT 1 cut(s) 1355
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 1563
BslI CCNNNNNNNGG 2 cut(s) 367, 1049
BsmAI GTCTC 2 cut(s) 687, 870
BsmI GAATGC 2 cut(s) 623, 1257
BsnI GGCC 4 cut(s) 254, 606, 645, 1443
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 90, 517, 841
BspACI CCGC 3 cut(s) 361, 898, 1318
BspANI GGCC 4 cut(s) 254, 606, 645, 1443
BspCNI CTCAG 6 cut(s) 163, 184, 213, 400, 435, 505
BspDI ATCGAT 1 cut(s) 1355
BspHI TCATGA 2 cut(s) 699, 1242
BspLI GGNNCC 2 cut(s) 908, 1558
BspPI GGATC 2 cut(s) 525, 836
BspT107I GGYRCC 1 cut(s) 906
BsrDI GCAATG 2 cut(s) 370, 738
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 1561
BssMI GATC 3 cut(s) 90, 517, 841
BssNAI GTATAC 1 cut(s) 809
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 809
Bst2BI CACGAG 1 cut(s) 468
Bst4CI ACNGT 6 cut(s) 440, 496, 615, 772, 918, 1156
Bst6I CTCTTC 1 cut(s) 998
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 3 cut(s) 32, 1229, 1382
BstC8I GCNNGC 3 cut(s) 297, 484, 1137
BstDEI CTNAG 6 cut(s) 150, 171, 221, 408, 422, 513
BstF5I GGATG 4 cut(s) 54, 91, 253, 1190
BstKTI GATC 3 cut(s) 93, 520, 844
BstMAI GTCTC 2 cut(s) 687, 870
BstMBI GATC 3 cut(s) 90, 517, 841
BstSCI CCNGG 1 cut(s) 1561
BstSFI CTRYAG 2 cut(s) 42, 1592
BstV1I GCAGC 6 cut(s) 88, 427, 487, 1226, 1235, 1558
BstV2I GAAGAC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 1456
BstZ17I GTATAC 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1355
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 254, 606, 645, 1443
BsuTUI ATCGAT 1 cut(s) 1355
BtsCI GGATG 4 cut(s) 54, 91, 253, 1190
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 5 cut(s) 299, 445, 492, 726, 768
Cac8I GCNNGC 3 cut(s) 297, 484, 1137
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 2 cut(s) 699, 1242
Cfr13I GGNCC 1 cut(s) 986
ClaI ATCGAT 1 cut(s) 1355
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 907, 1008
CviAII CATG 6 cut(s) 82, 313, 700, 1073, 1235, 1243
CviQI GTAC 2 cut(s) 907, 1008
DdeI CTNAG 6 cut(s) 150, 171, 221, 408, 422, 513
DpnI GATC 3 cut(s) 92, 519, 843
DpnII GATC 3 cut(s) 90, 517, 841
DriI GACNNNNNGTC 1 cut(s) 1396
Eam1104I CTCTTC 1 cut(s) 998
Eam1105I GACNNNNNGTC 1 cut(s) 1396
EarI CTCTTC 1 cut(s) 998
Eco32I GATATC 4 cut(s) 525, 868, 925, 1078
Eco47I GGWCC 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 515, 525, 1278
EcoRI GAATTC 2 cut(s) 884, 1238
EcoRV GATATC 4 cut(s) 525, 868, 925, 1078
FaeI CATG 6 cut(s) 85, 316, 703, 1076, 1238, 1246
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FatI CATG 6 cut(s) 81, 312, 699, 1072, 1234, 1242
FauI CCCGC 1 cut(s) 1311
FblI GTMKAC 2 cut(s) 808, 1591
Fnu4HI GCNGC 6 cut(s) 102, 416, 501, 1215, 1224, 1547
FokI GGATG 4 cut(s) 41, 98, 260, 1177
Fsp4HI GCNGC 6 cut(s) 102, 416, 501, 1215, 1224, 1547
FspBI CTAG 6 cut(s) 258, 464, 1022, 1121, 1332, 1424
GluI GCNGC 6 cut(s) 102, 416, 501, 1215, 1224, 1547
GsuI CTGGAG 3 cut(s) 177, 201, 747
HaeIII GGCC 4 cut(s) 254, 606, 645, 1443
HapII CCGG 1 cut(s) 1563
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 6 cut(s) 85, 316, 703, 1076, 1238, 1246
HincII GTYRAC 1 cut(s) 1476
HindII GTYRAC 1 cut(s) 1476
HinfI GANTC 3 cut(s) 275, 970, 1397
HpaII CCGG 1 cut(s) 1563
HphI GGTGA 1 cut(s) 919
Hpy166II GTNNAC 4 cut(s) 131, 809, 1476, 1592
Hpy8I GTNNAC 4 cut(s) 131, 809, 1476, 1592
HpyAV CCTTC 3 cut(s) 946, 1253, 1433
HpyCH4III ACNGT 6 cut(s) 440, 496, 615, 772, 918, 1156
HpyF3I CTNAG 6 cut(s) 150, 171, 221, 408, 422, 513
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 6 cut(s) 85, 316, 703, 1076, 1238, 1246
KpnI GGTACC 1 cut(s) 910
Kzo9I GATC 3 cut(s) 90, 517, 841
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 6 cut(s) 88, 427, 487, 1226, 1235, 1558
LweI GCATC 3 cut(s) 259, 1199, 1477
MaeI CTAG 6 cut(s) 258, 464, 1022, 1121, 1332, 1424
MaeIII GTNAC 4 cut(s) 315, 581, 724, 780
MalI GATC 3 cut(s) 92, 519, 843
MboI GATC 3 cut(s) 90, 517, 841
MboII GAAGA 4 cut(s) 83, 566, 1015, 1120
MfeI CAATTG 2 cut(s) 204, 477
MhlI GDGCHC 1 cut(s) 265
MlyI GAGTC 2 cut(s) 979, 1406
MmeI TCCRAC 2 cut(s) 1258, 1368
MseI TTAA 2 cut(s) 719, 1088
MslI CAYNNNNRTG 2 cut(s) 731, 837
MspA1I CMGCKG 2 cut(s) 1318, 1549
MspI CCGG 1 cut(s) 1563
MspR9I CCNGG 1 cut(s) 1563
MunI CAATTG 2 cut(s) 204, 477
Mva1269I GAATGC 2 cut(s) 623, 1257
NciI CCSGG 1 cut(s) 1563
NdeII GATC 3 cut(s) 90, 517, 841
NlaIII CATG 6 cut(s) 85, 316, 703, 1076, 1238, 1246
NlaIV GGNNCC 2 cut(s) 908, 1558
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 4 cut(s) 315, 581, 724, 780
PagI TCATGA 2 cut(s) 699, 1242
PctI GAATGC 2 cut(s) 623, 1257
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 103, 417, 502, 1216, 1225, 1548
PleI GAGTC 2 cut(s) 978, 1405
PpsI GAGTC 2 cut(s) 978, 1405
PspN4I GGNNCC 2 cut(s) 908, 1558
PspPI GGNCC 1 cut(s) 986
PstNI CAGNNNCTG 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 1549
RsaI GTAC 2 cut(s) 908, 1009
RsaNI GTAC 2 cut(s) 907, 1008
RseI CAYNNNNRTG 2 cut(s) 731, 837
SaqAI TTAA 2 cut(s) 719, 1088
SatI GCNGC 6 cut(s) 102, 416, 501, 1215, 1224, 1547
Sau3AI GATC 3 cut(s) 90, 517, 841
Sau96I GGNCC 1 cut(s) 986
ScaI AGTACT 1 cut(s) 1009
SchI GAGTC 2 cut(s) 979, 1406
ScrFI CCNGG 1 cut(s) 1563
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 3 cut(s) 259, 1199, 1477
SfcI CTRYAG 2 cut(s) 42, 1592
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 2 cut(s) 731, 837
SmlI CTYRAG 1 cut(s) 1272
SmoI CTYRAG 1 cut(s) 1272
SpeI ACTAGT 3 cut(s) 257, 1021, 1120
SsiI CCGC 3 cut(s) 361, 898, 1318
SspI AATATT 1 cut(s) 237
SspMI CTAG 6 cut(s) 258, 464, 1022, 1121, 1332, 1424
StyD4I CCNGG 1 cut(s) 1561
TaaI ACNGT 6 cut(s) 440, 496, 615, 772, 918, 1156
TaqI TCGA 2 cut(s) 577, 1355
TatI WGTACW 1 cut(s) 1007
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 719, 1088
Tru9I TTAA 2 cut(s) 719, 1088
TscAI CASTG 5 cut(s) 306, 445, 499, 733, 775
TseFI GTSAC 4 cut(s) 315, 581, 724, 780
TseI GCWGC 6 cut(s) 101, 415, 500, 1214, 1223, 1546
Tsp45I GTSAC 4 cut(s) 315, 581, 724, 780
TspDTI ATGAA 4 cut(s) 716, 1231, 1251, 1386
TspRI CASTG 5 cut(s) 306, 445, 499, 733, 775
VpaK11BI GGWCC 1 cut(s) 986
XapI RAATTY 3 cut(s) 884, 946, 1238
XbaI TCTAGA 1 cut(s) 1423
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmiI GTMKAC 2 cut(s) 808, 1591
XspI CTAG 6 cut(s) 258, 464, 1022, 1121, 1332, 1424
ZrmI AGTACT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.