Rh6DG433100

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001951
Physical Location & Seq
Forward (+)
61209698 .. 61212172
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG433100.1

Sequence Viewer

Length: 2052 bp
ATGTCAAGCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTGTTGAAGAGGTTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCAATTGAAACATACTCTCAGTCACTTAACAAGGCACTCAAACTTGGTGAGAAAGGTGGGCTTGCTAAGGGACTAGGTGTAGGCCTTACATATGGATTGTTGTTTTGTGCTTGGGCATTGCTTCTCTGGTATGCCGGCATACTTGTAAGACATCATGACACAAATGGAGGCAAAGCATTTACAACAATCATCAATGTCATCTTCAGTGGATTTGCTCTTGGCCAAGCTACCCCAAACCTGGCTGCCATTTCTAAAGGCCGAGCTGCTGCTGCGAATATCATGAAGATGATTGAATTAGATTCTAACTCCTCTAAAGTATCAGACAAAGGAGTAGTGTTGACAAAAGTATCAGGGCAGATTGTGTTTTCTGATGTTTGTTTTGCCTATCCATCACGACCCAACATGGTGTTCGAAAACCTGAGCTTTTTGATTAGTGCTGGCAAGACTTTTGCAGTTGTCGGTCCCAGTGGTTCAGGAAAGAGCACAATTATATCCATGGTTCAACGGTTCTACAACCCCTCTTCAGGTAAAATACTGTTGGATGGACATGATGTTTCCACTCTCCAATTGAGATGGTTGCGAGAACAGATGGGATTGGTAAGTCAAGAACCAGCATTGTTTGCTACTACTATAGTTGACAACATCCTGTTGGGTAAAGAAGACACCAACATGGATGAGATCATAGAAGCTGCTAAAGCTGCCAATGCACATTCTTTTATTCAAGGTTTACCTGATGGCTACAACACTCAGGCTGGAGAGGGAGGAACTCAGCTTTCTGGAGGGCAGAAACAGAGAATAGCAATTGCGAGAGCAGTTCTGAGAAACCCAAAAATATTACTCTTGGATGAGGCCACTAGTGCTCTTGATGAAGAATCAGAACAAATTGTTCAGCAAGCACTTGATAAAATCATGTCACATAGAGCTACAATCATTGTTGCTCACAGGCTTTCCACTATCCGCGATGTGGATACAATCATTGTGATGAAAAATGGTCAGGTTGTTCAGAGTGGCAGCCACTCAGAACTGGTGTGTAAGAAAGGTGAGTATGCTAGTCTGGTGAGCTTGCAGGTATTGGAACATGACAAACGTTCTAGCTCACTATCTCAGTCTGTAAGTGCAACAAATGCAAGCTTTCGAGAAAGCAATGATAGAAATCAGCAGGTTGTTAAGTCAATTACAACAAGAGAGCAGGAGCCAAGTGATCAAAAGCTGTCCAAAAGAAGTTCTTCTCCTAGTTCATCAATATGGGAATTAGTAAAACTAAATGCACACGAGTGGCCTTACGCGATACTCGGGTCAGTTGGTGCAATTCTGGCAGGAATGGAAGCTCCACTCTTTGCCCTTGGAATAACTCACATCTTGGCTGCATTTTATGCTCCAAATGGTTCCGAAATCAAACATGAGGTTAACAAGGTAATTCTCATGTTTGTTGTACTAGCAGGTATTACTGTTCCAATGTATCTGTTGCAGCACTACTTCTACACATTGATGGGGGAGCGGCTCACAAGTCGTGTGCGCCTATTAATGTTCTCAGCTATCCTTTCAAACGATGTTGGGTGGTTTGATTTGAATGAGAATAACACTGGTTCACTGAAATCAATCCTAGTTACCAATGCAACATTAGTCCGAAGCGCTCTAGCTGACCGCCTATCAACAATTGTGCAGAATGTATCACTCGCAGTAACTGCATTTGTTATTGCCTTCACATTAAGTTGGCGTATCGCAGCTGTTGTGGTTGCTACCCTCCCCCTACTTATTGGAGCTTCCATTGCTGAGCAATTGCTTCTTAAGGGATTTGGTGGAGACTACAACAGTGCTTATGCTAAAGCAACTTCCCTAGCTCGTGAAGCAATTGCCAACATACGCACTGTTGCTGCATTTGGGGCTGAGGATCGAATATCACTTCAGTTTGCTTCAGAGCTAAACCAGCCAAATAAGAAAGCAGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

683

Amino Acids

73.6

Weight (kDa)

8.17

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 101 1.6e-09 ABC transporter transmembrane region
ABC_tran PF00005 171 - 319 9.3e-34 ABC transporter
SMC_N PF02463 202 - 363 2.2e-06 RecF/RecN/SMC N terminal domain
ABC_membrane PF00664 464 - 681 7.9e-40 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1156, 1249, 1529
AccBSI CCGCTC 1 cut(s) 1597
AccII CGCG 2 cut(s) 1059, 1385
AciI CCGC 3 cut(s) 1057, 1597, 1744
AclI AACGTT 1 cut(s) 1186
AclWI GGATC 1 cut(s) 1998
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 5 cut(s) 60, 286, 606, 1988, 1998
AfaI GTAC 3 cut(s) 70, 77, 1533
AfeI AGCGCT 1 cut(s) 1732
AfiI CCNNNNNNNGG 3 cut(s) 337, 623, 1063
AflII CTTAAG 1 cut(s) 1886
AgsI TTSAA 7 cut(s) 59, 107, 392, 602, 821, 1644, 1669
AhlI ACTAGT 1 cut(s) 953
AjnI CCWGG 1 cut(s) 336
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AleI CACNNNNGTG 1 cut(s) 1372
Alw21I GWGCWC 2 cut(s) 584, 961
Alw26I GTCTC 1 cut(s) 1896
AlwI GGATC 1 cut(s) 1998
AlwNI CAGNNNCTG 1 cut(s) 1784
Ama87I CYCGRG 1 cut(s) 1391
Aor51HI AGCGCT 1 cut(s) 1732
AoxI GGCC 5 cut(s) 181, 319, 355, 948, 1376
AseI ATTAAT 1 cut(s) 1622
Asp700I GAANNNNTTC 2 cut(s) 63, 1324
AspLEI GCGC 2 cut(s) 1617, 1733
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 4 cut(s) 35, 158, 1151, 1168
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 1391
AvaII GGWCC 1 cut(s) 560
BaeI ACNNNNGTAYC 4 cut(s) 429, 462, 1379, 1412
BalI TGGCCA 1 cut(s) 321
BauI CACGAG 2 cut(s) 1370, 1941
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 2 cut(s) 584, 961
BbvCI CCTCAGC 1 cut(s) 1986
BccI CCATC 6 cut(s) 496, 635, 666, 682, 827, 1582
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 1060
BclI TGATCA 1 cut(s) 1300
BcoDI GTCTC 1 cut(s) 1896
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 9 cut(s) 173, 954, 1149, 1191, 1332, 1535, 1703, 1736, 1937
BfmI CTRYAG 1 cut(s) 729
BfoI RGCGCY 1 cut(s) 1734
BfrI CTTAAG 1 cut(s) 1886
BfuAI ACCTGC 3 cut(s) 1156, 1249, 1529
BfuI GTATCC 1 cut(s) 1060
BlpI GCTNAGC 1 cut(s) 1872
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 1 cut(s) 1391
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 3 cut(s) 562, 1293, 1486
BmrFI CCNGG 1 cut(s) 338
BmrI ACTGGG 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 765
BpmI CTGGAG 2 cut(s) 873, 897
Bpu10I CCTNAGC 3 cut(s) 165, 518, 1986
Bpu1102I GCTNAGC 1 cut(s) 1872
Bpu14I TTCGAA 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 1251
BsaJI CCNNGG 2 cut(s) 594, 1441
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 623, 1063
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 564, 1128, 1687
Bse3DI GCAATG 3 cut(s) 215, 1249, 1866
Bse8I GATNNNNATC 1 cut(s) 1251
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 594, 1441
BseGI GGATG 4 cut(s) 646, 741, 778, 949
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 3 cut(s) 337, 623, 1063
BseMI GCAATG 3 cut(s) 215, 1249, 1866
BseNI ACTGG 3 cut(s) 564, 1128, 1687
BseRI GAGGAG 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 1781
Bsh1236I CGCG 2 cut(s) 1059, 1385
BshFI GGCC 5 cut(s) 183, 321, 357, 950, 1378
BsiHKAI GWGCWC 2 cut(s) 584, 961
BsiHKCI CYCGRG 1 cut(s) 1391
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 183, 546
BslI CCNNNNNNNGG 3 cut(s) 337, 623, 1063
BsmAI GTCTC 1 cut(s) 1896
BsmFI GGGAC 2 cut(s) 183, 546
BsnI GGCC 5 cut(s) 183, 321, 357, 950, 1378
BsoBI CYCGRG 1 cut(s) 1391
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 584, 961
Bsp143I GATC 3 cut(s) 777, 1300, 1990
Bsp1720I GCTNAGC 1 cut(s) 1872
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 3 cut(s) 1057, 1597, 1744
BspANI GGCC 5 cut(s) 183, 321, 357, 950, 1378
BspFNI CGCG 2 cut(s) 1059, 1385
BspHI TCATGA 2 cut(s) 253, 378
BspLI GGNNCC 3 cut(s) 562, 1293, 1486
BspMI ACCTGC 3 cut(s) 1156, 1249, 1529
BspPI GGATC 1 cut(s) 1998
BspT104I TTCGAA 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 1886
BsrBI CCGCTC 1 cut(s) 1597
BsrDI GCAATG 3 cut(s) 215, 1249, 1866
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 564, 1128, 1687
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 594, 1441
BssMI GATC 3 cut(s) 777, 1300, 1990
BssSI CACGAG 2 cut(s) 1370, 1941
BssT1I CCWWGG 2 cut(s) 594, 1441
Bst2BI CACGAG 2 cut(s) 1370, 1941
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 6 cut(s) 73, 606, 636, 1549, 1913, 1969
Bst6I CTCTTC 2 cut(s) 54, 625
BstAFI CTTAAG 1 cut(s) 1886
BstAPI GCANNNNNTGC 4 cut(s) 719, 1223, 1472, 1784
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 6 cut(s) 162, 235, 538, 993, 1163, 1228
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 4 cut(s) 646, 741, 778, 949
BstFNI CGCG 2 cut(s) 1059, 1385
BstH2I RGCGCY 1 cut(s) 1734
BstHHI GCGC 2 cut(s) 1617, 1733
BstKTI GATC 3 cut(s) 780, 1303, 1993
BstMAI GTCTC 1 cut(s) 1896
BstMBI GATC 3 cut(s) 777, 1300, 1990
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 729
BstUI CGCG 2 cut(s) 1059, 1385
BstV2I GAAGAC 1 cut(s) 765
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 5 cut(s) 183, 321, 357, 950, 1378
BtgI CCRYGG 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 1074
BtsCI GGATG 4 cut(s) 646, 741, 778, 949
BtsIMutI CAGTG 6 cut(s) 310, 571, 1680, 1688, 1918, 1965
BveI ACCTGC 3 cut(s) 1156, 1249, 1529
Cac8I GCNNGC 6 cut(s) 162, 235, 538, 993, 1163, 1228
CaiI CAGNNNCTG 1 cut(s) 1784
CciI TCATGA 2 cut(s) 253, 378
CfoI GCGC 2 cut(s) 1617, 1733
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 3 cut(s) 69, 76, 1532
CviQI GTAC 3 cut(s) 69, 76, 1532
DpnI GATC 3 cut(s) 779, 1302, 1992
DpnII GATC 3 cut(s) 777, 1300, 1990
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 54, 625
EarI CTCTTC 2 cut(s) 54, 625
Eco130I CCWWGG 2 cut(s) 594, 1441
Eco147I AGGCCT 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 560
Eco47III AGCGCT 1 cut(s) 1732
Eco57I CTGAAG 5 cut(s) 60, 286, 606, 1988, 1998
Eco88I CYCGRG 1 cut(s) 1391
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 594, 1441
ErhI CCWWGG 2 cut(s) 594, 1441
FalI AAGNNNNNCTT 5 cut(s) 144, 176, 1309, 1341, 2031
FaqI GGGAC 2 cut(s) 183, 546
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 1300
FokI GGATG 4 cut(s) 653, 728, 785, 956
FspBI CTAG 9 cut(s) 173, 954, 1149, 1191, 1332, 1535, 1703, 1736, 1937
GlaI GCGC 2 cut(s) 1616, 1732
GsuI CTGGAG 2 cut(s) 873, 897
HaeII RGCGCY 1 cut(s) 1734
HaeIII GGCC 5 cut(s) 183, 321, 357, 950, 1378
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 1617, 1733
Hin6I GCGC 2 cut(s) 1615, 1731
HinP1I GCGC 2 cut(s) 1615, 1731
HincII GTYRAC 3 cut(s) 438, 736, 1507
HindII GTYRAC 3 cut(s) 438, 736, 1507
HindIII AAGCTT 2 cut(s) 7, 1228
HinfI GANTC 2 cut(s) 398, 971
HpaI GTTAAC 1 cut(s) 1507
HpaII CCGG 1 cut(s) 234
HphI GGTGA 4 cut(s) 35, 158, 1151, 1168
Hpy166II GTNNAC 6 cut(s) 76, 438, 736, 827, 1507, 1688
Hpy188III TCNNGA 9 cut(s) 254, 379, 492, 573, 704, 876, 962, 1235, 1943
Hpy8I GTNNAC 6 cut(s) 76, 438, 736, 827, 1507, 1688
HpyAV CCTTC 1 cut(s) 1810
HpyCH4III ACNGT 6 cut(s) 73, 606, 636, 1549, 1913, 1969
HpyCH4IV ACGT 1 cut(s) 1186
HpySE526I ACGT 1 cut(s) 1186
HspAI GCGC 2 cut(s) 1615, 1731
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 1300
KspAI GTTAAC 1 cut(s) 1507
Kzo9I GATC 3 cut(s) 777, 1300, 1990
LmnI GCTCC 5 cut(s) 1291, 1432, 1480, 1594, 1859
MaeI CTAG 9 cut(s) 173, 954, 1149, 1191, 1332, 1535, 1703, 1736, 1937
MaeII ACGT 1 cut(s) 1186
MaeIII GTNAC 4 cut(s) 120, 1011, 1705, 1780
MalI GATC 3 cut(s) 779, 1302, 1992
MbiI CCGCTC 1 cut(s) 1597
MboI GATC 3 cut(s) 777, 1300, 1990
MboII GAAGA 7 cut(s) 71, 292, 394, 612, 770, 980, 1317
MfeI CAATTG 6 cut(s) 102, 665, 900, 1755, 1877, 1950
MhlI GDGCHC 2 cut(s) 584, 961
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 618
Mox20I TGGCCA 1 cut(s) 321
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 2 cut(s) 63, 1324
MscI TGGCCA 1 cut(s) 321
MseI TTAA 6 cut(s) 126, 1266, 1506, 1622, 1808, 1887
MslI CAYNNNNRTG 6 cut(s) 383, 767, 1079, 1342, 1372, 1586
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 1826
MspCI CTTAAG 1 cut(s) 1886
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 338
MunI CAATTG 6 cut(s) 102, 665, 900, 1755, 1877, 1950
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 1059, 1385
NaeI GCCGGC 1 cut(s) 235
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 777, 1300, 1990
NgoMIV GCCGGC 1 cut(s) 233
NlaIV GGNNCC 3 cut(s) 562, 1293, 1486
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 2 cut(s) 120, 1011
NspV TTCGAA 1 cut(s) 510
OliI CACNNNNGTG 1 cut(s) 1372
PagI TCATGA 2 cut(s) 253, 378
PceI AGGCCT 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 2 cut(s) 63, 1324
PfeI GAWTC 2 cut(s) 398, 971
PshBI ATTAAT 1 cut(s) 1622
Psp1406I AACGTT 1 cut(s) 1186
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 562, 1293, 1486
PspPI GGNCC 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 1784
PvuII CAGCTG 1 cut(s) 1826
RsaI GTAC 3 cut(s) 70, 77, 1533
RsaNI GTAC 3 cut(s) 69, 76, 1532
RseI CAYNNNNRTG 6 cut(s) 383, 767, 1079, 1342, 1372, 1586
SaqAI TTAA 6 cut(s) 126, 1266, 1506, 1622, 1808, 1887
Sau3AI GATC 3 cut(s) 777, 1300, 1990
Sau96I GGNCC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 2 cut(s) 584, 961
SfcI CTRYAG 1 cut(s) 729
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 6 cut(s) 383, 767, 1079, 1342, 1372, 1586
SmlI CTYRAG 1 cut(s) 1886
SmoI CTYRAG 1 cut(s) 1886
SpeI ACTAGT 1 cut(s) 953
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 3 cut(s) 1057, 1597, 1744
SspI AATATT 1 cut(s) 933
SspMI CTAG 9 cut(s) 173, 954, 1149, 1191, 1332, 1535, 1703, 1736, 1937
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 594, 1441
TaaI ACNGT 6 cut(s) 73, 606, 636, 1549, 1913, 1969
TaiI ACGT 1 cut(s) 1189
TaqI TCGA 3 cut(s) 510, 1234, 1993
TaqII GACCGA 1 cut(s) 548
TatI WGTACW 2 cut(s) 75, 1531
TauI GCSGC 1 cut(s) 1600
TfiI GAWTC 2 cut(s) 398, 971
Tru1I TTAA 6 cut(s) 126, 1266, 1506, 1622, 1808, 1887
Tru9I TTAA 6 cut(s) 126, 1266, 1506, 1622, 1808, 1887
TscAI CASTG 6 cut(s) 310, 571, 1687, 1695, 1918, 1972
TseFI GTSAC 2 cut(s) 120, 1011
Tsp45I GTSAC 2 cut(s) 120, 1011
TspDTI ATGAA 4 cut(s) 395, 981, 1097, 1326
TspRI CASTG 6 cut(s) 310, 571, 1687, 1695, 1918, 1972
Vha464I CTTAAG 1 cut(s) 1886
VpaK11BI GGWCC 1 cut(s) 560
VspI ATTAAT 1 cut(s) 1622
XmnI GAANNNNTTC 2 cut(s) 63, 1324
XspI CTAG 9 cut(s) 173, 954, 1149, 1191, 1332, 1535, 1703, 1736, 1937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.