Rh6AG433900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001951
Physical Location & Seq
Forward (+)
62399562 .. 62400080
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG433900.1

Sequence Viewer

Length: 519 bp
ATGGTATTGATTTTTACTGCACTGTGCATAGCAGAAACACTTGCTCTTGCTCCAGACATTGTGAAGGGGTCACAAGTACTCGGGTCGATTTTTAGTATTCTCAAAAGAGAAACAACCATACATTCTAATGATCCCACATCAAATGTGGTTGCTGTTATAAGAGGAGAAATAGAATTCAGAAATGTGAGCTTTTGGTACCCTGCTCGGTCTGATATCACCATTTTCGACAACTTGAATTTGAAGGTGTCAGCTGGAAAGAGTCTAGCAGTTGTCGGTCCAAGTGGTTCGGGGAAGAGTACTGTAATTGCACTAGTAATGAGATTTTATGACCCTATTTTTGGAGCAGTTATGATTGATGGACATGATATCAAAGGCTTAAACTTGAAATCTTTGAGGAAGAAAATAGGACTAGTCCAGCAAGAGCCAGCATTGTTCTCAACAATAGTTTATGACAACATCAAATATGGGAATGAGGAAGCATCCGAAGTTGAGGGCAGCAGAAGCAGCAAATGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

172

Amino Acids

18.65

Weight (kDa)

7.75

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 76 - 159 6e-18 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 173, 235
AfaI GTAC 3 cut(s) 78, 197, 298
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 235, 241, 385
AhlI ACTAGT 2 cut(s) 310, 409
AluBI AGCT 2 cut(s) 189, 251
AluI AGCT 2 cut(s) 189, 251
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 495, 504
ApoI RAATTY 2 cut(s) 173, 235
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp718I GGTACC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 507
BccI CCATC 1 cut(s) 350
BcuI ACTAGT 2 cut(s) 310, 409
BfaI CTAG 3 cut(s) 263, 311, 410
BisI GCNGC 2 cut(s) 496, 505
BlsI GCNGC 2 cut(s) 497, 506
BmcAI AGTACT 2 cut(s) 78, 298
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 195
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 24, 301
Bst6I CTCTTC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 426
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 501, 504, 510
BstV1I GCAGC 1 cut(s) 507
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 3 cut(s) 77, 196, 297
CviAII CATG 2 cut(s) 362, 516
CviJI RGCY 4 cut(s) 189, 251, 375, 424
CviKI_1 RGCY 4 cut(s) 189, 251, 375, 424
CviQI GTAC 3 cut(s) 77, 196, 297
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco32I GATATC 2 cut(s) 214, 367
Eco47I GGWCC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 173
EcoRV GATATC 2 cut(s) 214, 367
FaeI CATG 2 cut(s) 365, 519
FaiI YATR 9 cut(s) 29, 119, 158, 327, 350, 363, 450, 465, 517
FatI CATG 2 cut(s) 361, 515
Fnu4HI GCNGC 2 cut(s) 496, 505
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 2 cut(s) 496, 505
FspBI CTAG 3 cut(s) 263, 311, 410
GluI GCNGC 2 cut(s) 496, 505
GsuI CTGGAG 1 cut(s) 36
Hin1II CATG 2 cut(s) 365, 519
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 179, 211, 484
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 58, 235
HpyCH4III ACNGT 2 cut(s) 24, 301
HpyCH4V TGCA 3 cut(s) 20, 27, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 504, 510
Hsp92II CATG 2 cut(s) 365, 519
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 55, 341
LpnPI CCDG 5 cut(s) 66, 213, 237, 428, 438
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 488
MaeI CTAG 3 cut(s) 263, 311, 410
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 304, 409
MluCI AATT 3 cut(s) 173, 235, 303
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 4 cut(s) 155, 387, 466, 484
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 501, 504, 510
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 365, 519
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 497, 506
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PsiI TTATAA 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 78, 197, 298
RsaNI GTAC 3 cut(s) 77, 196, 297
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 496, 505
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 2 cut(s) 78, 298
SchI GAGTC 1 cut(s) 268
SetI ASST 3 cut(s) 191, 246, 253
SfaNI GCATC 1 cut(s) 488
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 2 cut(s) 310, 409
Sse9I AATT 3 cut(s) 173, 235, 303
SspMI CTAG 3 cut(s) 263, 311, 410
TaaI ACNGT 2 cut(s) 24, 301
TaqI TCGA 2 cut(s) 86, 225
TaqII GACCGA 2 cut(s) 195, 263
TasI AATT 3 cut(s) 173, 235, 303
TatI WGTACW 2 cut(s) 76, 296
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 2 cut(s) 495, 504
Tsp45I GTSAC 1 cut(s) 69
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 173, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XspI CTAG 3 cut(s) 263, 311, 410
ZrmI AGTACT 2 cut(s) 78, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.