Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Forward (+)

63046428 .. 63048435

Gene Structure 2008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGACTATGTCTTGATGCTTTTTGGAAGTTTCGGAGCGTGTATCCATGTATGCTTTGTGCTTGATCTATCTTGGAATTGTTCTCTTTATATCAGCATGGATAGGTGTAGCATCTTGGACGCGAACTGGTGGGACTGTGAGAGGCAGACAGCTCGTTTGCGATTGAAGTATCTTCAATCAGTTCTAAGGAAGGATATTGATTTTTTCGACACTGAAGCCAGAGACACTAACATCATTTTCCACATTTCGAGTGATGCTATACTAGTCCAAGATGCAATAGGTGACAAGCTTACGCTTCTTACCTTAGCTGTGTTTCCACTGATAGCTCTTGCAGGGGGAGACTATACCATAGTCATGTCAAGCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTGCTGAAGAGGTGATTTCGCAGATTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCAATTGAAACATACTCTCAGTCACTTCTCAAGGCACTCAAACTTGGTGAGAAAGGTGGGCTTGCTAAGGGATGTAGGCCTTACATATGGACTGTTGTTTTTGCTCTTGGCCAAGCTACCCCAAACCTGGCTGCCATTTCTAAAGGCCGAGCTGCTGCTGCAAATATCATGAAGATGATTGAATCAGATTCTAACTCCTCTAAAGTATCAGACAAAGGAGTAGTGTTGCCAAAAGTATCAGGGCATATTGTGTTTTCTAATGTTTGTTTTGCCTATCCATCACGACCCAACATGGTTGGTTTAGGAAAGAGCACCATTATATCCATGGTTCAACGGTTCTACAACCCCTCTTCAGGTAACATACTGTTGGATAGACATGATGTTTCCACTCTCCAATTGAGATGGTTGCATGAACAGATGGGATTGGTAAGTCAAGAACTAGCATTGTTTGCTACTACTATAGCTGACAACATCCTGTTGGGTAAAGAAGACGCCGATATGGATGGGATCATAGAAGCTGCTAAAGCTGCCAATGCACATTCTTTTATTCAAGGTTTACCTGACGGCTACAAAGTCAAATATCACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

352

Amino Acids

38.64

Weight (kDa)

6.0

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	96 - 173	5.6e-13	ABC transporter transmembrane region
ABC_tran	PF00005	255 - 333	4e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AclWI	GGATC	1 cut(s)	980
AcoI	YGGCCR	1 cut(s)	574
AcuI	CTGAAG	4 cut(s)	234, 414, 432, 801
AcyI	GRCGYC	1 cut(s)	957
AfaI	GTAC	2 cut(s)	436, 443
AfiI	CCNNNNNNNGG	2 cut(s)	592, 818
AgsI	TTSAA	6 cut(s)	166, 176, 473, 647, 797, 1016
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	591
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	216, 333
AlwI	GGATC	1 cut(s)	980
AoxI	GGCC	3 cut(s)	542, 574, 610
ApeKI	GCWGC	7 cut(s)	383, 596, 617, 620, 623, 983, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AsuHPI	GGTGA	4 cut(s)	293, 389, 430, 524
BalI	TGGCCA	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	7 cut(s)	370, 583, 604, 607, 610, 970, 979
BccI	CCATC	4 cut(s)	751, 861, 877, 962
BceAI	ACGGC	1 cut(s)	1045
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	216, 333
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 905
BfmI	CTRYAG	1 cut(s)	924
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	7 cut(s)	384, 597, 618, 621, 624, 984, 993
BlsI	GCNGC	7 cut(s)	385, 598, 619, 622, 625, 985, 994
Bme1390I	CCNGG	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	4 cut(s)	6, 120, 244, 262
BpiI	GAAGAC	1 cut(s)	960
Bpu10I	CCTNAGC	2 cut(s)	304, 531
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	957
BsaJI	CCNNGG	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 818
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	3 cut(s)	542, 936, 973
BseLI	CCNNNNNNNGG	2 cut(s)	592, 818
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	7 cut(s)	370, 583, 604, 607, 610, 970, 979
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	544, 576, 612
BsiHKAI	GWGCWC	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	592, 818
BsmAI	GTCTC	2 cut(s)	216, 333
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	544, 576, 612
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	2 cut(s)	64, 972
Bsp19I	CCATGG	1 cut(s)	789
BspANI	GGCC	3 cut(s)	544, 576, 612
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	633
BspPI	GGATC	1 cut(s)	980
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	2 cut(s)	64, 972
BssNI	GRCGYC	1 cut(s)	957
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	5 cut(s)	137, 439, 559, 801, 831
Bst6I	CTCTTC	2 cut(s)	408, 820
BstACI	GRCGYC	1 cut(s)	957
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	4 cut(s)	185, 304, 483, 531
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	3 cut(s)	542, 936, 973
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	67, 975
BstMAI	GTCTC	2 cut(s)	216, 333
BstMBI	GATC	2 cut(s)	64, 972
BstMWI	GCNNNNNNNGC	6 cut(s)	389, 623, 914, 989, 992, 998
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	924
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	7 cut(s)	370, 583, 604, 607, 610, 970, 979
BstV2I	GAAGAC	1 cut(s)	960
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	544, 576, 612
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	542, 936, 973
BtsIMutI	CAGTG	2 cut(s)	210, 317
Cac8I	GCNNGC	1 cut(s)	528
CciI	TCATGA	1 cut(s)	633
CseI	GACGC	2 cut(s)	128, 965
Csp6I	GTAC	2 cut(s)	435, 442
CviAII	CATG	8 cut(s)	47, 97, 355, 634, 757, 790, 842, 875
CviQI	GTAC	2 cut(s)	435, 442
DdeI	CTNAG	4 cut(s)	185, 304, 483, 531
DpnI	GATC	2 cut(s)	66, 974
DpnII	GATC	2 cut(s)	64, 972
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	408, 820
EarI	CTCTTC	2 cut(s)	408, 820
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	544
Eco57I	CTGAAG	4 cut(s)	234, 414, 432, 801
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	8 cut(s)	50, 100, 358, 637, 760, 793, 845, 878
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	8 cut(s)	46, 96, 354, 633, 756, 789, 841, 874
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	7 cut(s)	384, 597, 618, 621, 624, 984, 993
FokI	GGATG	3 cut(s)	549, 923, 980
Fsp4HI	GCNGC	7 cut(s)	384, 597, 618, 621, 624, 984, 993
FspBI	CTAG	2 cut(s)	263, 905
GluI	GCNGC	7 cut(s)	384, 597, 618, 621, 624, 984, 993
HaeIII	GGCC	3 cut(s)	544, 576, 612
HgaI	GACGC	2 cut(s)	128, 965
Hin1I	GRCGYC	1 cut(s)	957
Hin1II	CATG	8 cut(s)	50, 100, 358, 637, 760, 793, 845, 878
HindIII	AAGCTT	2 cut(s)	287, 361
HinfI	GANTC	3 cut(s)	430, 647, 653
HphI	GGTGA	4 cut(s)	293, 389, 430, 524
Hpy166II	GTNNAC	2 cut(s)	442, 1022
Hpy188I	TCNGA	4 cut(s)	35, 370, 652, 676
Hpy188III	TCNNGA	4 cut(s)	13, 634, 747, 899
Hpy8I	GTNNAC	2 cut(s)	442, 1022
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	5 cut(s)	137, 439, 559, 801, 831
HpyCH4V	TGCA	5 cut(s)	275, 332, 626, 874, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	389, 623, 914, 989, 992, 998
HpyF3I	CTNAG	4 cut(s)	185, 304, 483, 531
Hsp92I	GRCGYC	1 cut(s)	957
Hsp92II	CATG	8 cut(s)	50, 100, 358, 637, 760, 793, 845, 878
Kzo9I	GATC	2 cut(s)	64, 972
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	7 cut(s)	370, 583, 604, 607, 610, 970, 979
LweI	GCATC	4 cut(s)	6, 120, 244, 262
MaeI	CTAG	2 cut(s)	263, 905
MaeIII	GTNAC	3 cut(s)	281, 486, 821
MalI	GATC	2 cut(s)	66, 974
MboI	GATC	2 cut(s)	64, 972
MboII	GAAGA	5 cut(s)	164, 425, 649, 807, 965
MfeI	CAATTG	2 cut(s)	468, 860
MhlI	GDGCHC	1 cut(s)	779
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	3 cut(s)	76, 468, 860
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	813
MnlI	CCTC	6 cut(s)	135, 373, 409, 451, 673, 823
Mox20I	TGGCCA	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	576
MslI	CAYNNNNRTG	2 cut(s)	353, 638
Msp20I	TGGCCA	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	2 cut(s)	468, 860
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	6 cut(s)	389, 623, 914, 989, 992, 998
NcoI	CCATGG	1 cut(s)	789
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	2 cut(s)	64, 972
NlaIII	CATG	8 cut(s)	50, 100, 358, 637, 760, 793, 845, 878
NmeAIII	GCCGAG	1 cut(s)	638
NmuCI	GTSAC	2 cut(s)	281, 486
PagI	TCATGA	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	430, 647, 653
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	7 cut(s)	385, 598, 619, 622, 625, 985, 994
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	2 cut(s)	436, 443
RsaNI	GTAC	2 cut(s)	435, 442
RseI	CAYNNNNRTG	2 cut(s)	353, 638
SatI	GCNGC	7 cut(s)	384, 597, 618, 621, 624, 984, 993
Sau3AI	GATC	2 cut(s)	64, 972
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	4 cut(s)	6, 120, 244, 262
SfcI	CTRYAG	1 cut(s)	924
SmiMI	CAYNNNNRTG	2 cut(s)	353, 638
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	3 cut(s)	76, 468, 860
SseBI	AGGCCT	1 cut(s)	544
SspMI	CTAG	2 cut(s)	263, 905
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	5 cut(s)	137, 439, 559, 801, 831
TaqI	TCGA	2 cut(s)	207, 248
TasI	AATT	3 cut(s)	76, 468, 860
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	430, 647, 653
TscAI	CASTG	2 cut(s)	217, 324
TseFI	GTSAC	2 cut(s)	281, 486
TseI	GCWGC	7 cut(s)	383, 596, 617, 620, 623, 983, 992
Tsp45I	GTSAC	2 cut(s)	281, 486
TspDTI	ATGAA	2 cut(s)	650, 891
TspRI	CASTG	2 cut(s)	217, 324
Tth111I	GACNNNGTC	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XspI	CTAG	2 cut(s)	263, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.