Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007252.1

Orthogroup ID

OG0001951

Physical Location & Seq

Genomic Coordinates Forward (+)

7496 .. 9554

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007252.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atggaccatctgttaatgcttttcggaagtttcggagctcgtatccatggtgctgcactccctgtattctttgtcttgtttggtgggatgattgattctttgggtcatatggctaagcaccctaacaaaatgtcatcccggatttctgagtatgctttgtacttgatctatcttggaattgttctttttttatcagcatggataggtgttgcatcttggacgcgaactggtgagaggcagacagctcgtttgcaattgaagtatcttcaatcagttctaaggaaggatattgatttttttgacactgaagccagagacactaacatcattttccacatttcaagtgatgctatactagtccaagatgcaatagacaggccacactttgcgttaccttctcagttcattgtaggatttgccaatggatttgcatcggtgcggcagcttacgcttcttaccttagctgtggttccactgatagctcttgcagggggagcctataccatagtcaagtcaagcttatcagaaaaaggtgaggctgcttatgctgaagctggaaaagttgctgaagaggtgatttcgcagatttgtactgtgtactcatttgtgggagaggacaaagcaattgaaacatactctcagtcacttatcaaggcactcaaacttggtgagaaaggtgggcttgctaagggactaggtgtaggccttacatatggactgttgttttgtgcttgggcattgcttctctggtatgccagcatacttgtaagacatcatgacacaaatggaggcaaagcattttcaacaatcatcaatgtcatcgtcagtggatttgctcttggccaagctaccccaaacctggctgccatttctaaaggccgagctgctgctgcaaatatcatgaagatgattgaatcagattctaactcctctaaagtatcagacaaaggagtagtgttgccaaaagtatcagggcagattgtgttttctgatgtttgttttgcctatccatcacgacccaacatggtgttcgaaaacctgagcttttcgattagtgctggcaagacttttgcagttgtctgtcccagtggttcaggaaagagcgccattatatccatggttcaacggctctacaacccctcttcaggtaacatactgttggatggacatgatgtttccactctccaattgagatggttgcgtgaacagatgggattggtaagtcaagaaccagcattgtttgctactactatagctgacaacatcctgttgggtaaagaagacgccgacatggatgagatcatagaagctgctaaagctgccaatgcacattcttttattcaaggtttacctgatggctacaacactcaggctggagagggaggaactcaggaactcagctttctggagggcagaagcagagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

475

Amino Acids

51.1

Weight (kDa)

6.23

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27940 AT1G27940 AT1G28010
fragaria_vesca	FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200 FvH4_2g38200
malus_domestica	MD08G1010400.v1.1 MD15G1010500.v1.1
prunus_persica	Prupe.1G363000_v2.0.a1
pyrus_communis	pycom08g00880 pycom15g00870
rosa_chinensis	RchiOBHm_Chr6g0303191 RchiOBHm_Chr6g0303201 RchiOBHm_Chr6g0303231 RchiOBHm_Chr6g0303261 RchiOBHm_Chr6g0303271 RchiOBHm_Chr6g0303281
rosa_laevigata	RLG00000011096 RLG00000011098
rosa_multiflora	Rmu_sc0007252.1_g000003 Rmu_sc0007252.1_g000004 Rmu_sc0036924.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164910
rosa_rugosa	Rorug06G0319800 Rorug06G0319800 Rorug06G0319900 Rorug06G0319900
rosa_samantha	Rh6AG433700 Rh6AG433900 Rh6AG434300 Rh6AG434400 Rh6BG468700 Rh6BG468800 Rh6BG468900 Rh6CG446200 Rh6CG446400 Rh6DG433000 Rh6DG433100
rosa_wichuraiana	Rw6G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	223
AciI	CCGC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	841
AcuI	CTGAAG	4 cut(s)	327, 570, 588, 1128
AcyI	GRCGYC	1 cut(s)	1284
AfaI	GTAC	3 cut(s)	161, 592, 599
AfiI	CCNNNNNNNGG	2 cut(s)	859, 1145
AgsI	TTSAA	8 cut(s)	259, 269, 342, 629, 804, 914, 1124, 1343
AhlI	ACTAGT	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	858
AjuI	GAANNNNNNNTTGG	2 cut(s)	1013, 1045
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	309
AoxI	GGCC	4 cut(s)	377, 703, 841, 877
ApeKI	GCWGC	9 cut(s)	53, 442, 539, 863, 884, 887, 890, 1310, 1319
ArsI	GACNNNNNNTTYG	4 cut(s)	232, 264, 708, 740
AspLEI	GCGC	1 cut(s)	1106
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	242, 545, 586, 680
AsuII	TTCGAA	1 cut(s)	1032
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	1287
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	9 cut(s)	40, 454, 526, 850, 871, 874, 877, 1297, 1306
BccI	CCATC	6 cut(s)	15, 1018, 1157, 1188, 1204, 1349
BceAI	ACGGC	1 cut(s)	1142
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	860
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	309
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	2 cut(s)	356, 695
BfmI	CTRYAG	1 cut(s)	1251
BfoI	RGCGCY	1 cut(s)	1107
BfuI	GTATCC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	139, 860
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	471, 496
BmrFI	CCNGG	2 cut(s)	139, 860
BmrI	ACTGGG	1 cut(s)	1080
BmsI	GCATC	4 cut(s)	221, 337, 355, 440
BmuI	ACTGGG	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	1287
BpmI	CTGGAG	2 cut(s)	1395, 1427
Bpu10I	CCTNAGC	3 cut(s)	460, 687, 1040
Bpu1102I	GCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	1032
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	1284
BsaJI	CCNNGG	2 cut(s)	46, 1116
Bsc4I	CCNNNNNNNGG	2 cut(s)	859, 1145
Bse1I	ACTGG	2 cut(s)	232, 1086
Bse3DI	GCAATG	1 cut(s)	737
Bse8I	GATNNNNATC	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	2 cut(s)	46, 1116
BseGI	GGATG	5 cut(s)	93, 134, 1168, 1263, 1300
BseJI	GATNNNNATC	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	859, 1145
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	7 cut(s)	138, 413, 653, 1031, 1382, 1403, 1411
BseNI	ACTGG	2 cut(s)	232, 1086
BseRI	GAGGAG	1 cut(s)	919
BseXI	GCAGC	9 cut(s)	40, 454, 526, 850, 871, 874, 877, 1297, 1306
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	4 cut(s)	379, 705, 843, 879
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	2 cut(s)	705, 1068
BslI	CCNNNNNNNGG	2 cut(s)	859, 1145
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	705, 1068
BsnI	GGCC	4 cut(s)	379, 705, 843, 879
Bsp119I	TTCGAA	1 cut(s)	1032
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	165, 1299
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	2 cut(s)	46, 1116
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	4 cut(s)	379, 705, 843, 879
BspCNI	CTCAG	7 cut(s)	139, 412, 652, 1032, 1381, 1402, 1410
BspFNI	CGCG	1 cut(s)	223
BspHI	TCATGA	2 cut(s)	775, 900
BspLI	GGNNCC	2 cut(s)	471, 496
BspT104I	TTCGAA	1 cut(s)	1032
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	2 cut(s)	232, 1086
BssECI	CCNNGG	2 cut(s)	46, 1116
BssMI	GATC	2 cut(s)	165, 1299
BssNI	GRCGYC	1 cut(s)	1284
BssT1I	CCWWGG	2 cut(s)	46, 1116
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	3 cut(s)	595, 720, 1158
Bst6I	CTCTTC	2 cut(s)	564, 1147
BstACI	GRCGYC	1 cut(s)	1284
BstAPI	GCANNNNNTGC	1 cut(s)	1241
BstBI	TTCGAA	1 cut(s)	1032
BstC8I	GCNNGC	3 cut(s)	684, 757, 1060
BstDSI	CCRYGG	2 cut(s)	46, 1116
BstF5I	GGATG	5 cut(s)	93, 134, 1168, 1263, 1300
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	1107
BstHHI	GCGC	1 cut(s)	1106
BstKTI	GATC	2 cut(s)	168, 1302
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	165, 1299
BstMWI	GCNNNNNNNGC	8 cut(s)	448, 494, 545, 890, 1241, 1316, 1319, 1325
BstNI	CCWGG	1 cut(s)	860
BstSCI	CCNGG	2 cut(s)	137, 858
BstSFI	CTRYAG	1 cut(s)	1251
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	9 cut(s)	40, 454, 526, 850, 871, 874, 877, 1297, 1306
BstV2I	GAAGAC	1 cut(s)	1287
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	379, 705, 843, 879
BtgI	CCRYGG	2 cut(s)	46, 1116
BtsCI	GGATG	5 cut(s)	93, 134, 1168, 1263, 1300
BtsIMutI	CAGTG	4 cut(s)	303, 473, 832, 1093
Cac8I	GCNNGC	3 cut(s)	684, 757, 1060
CciI	TCATGA	2 cut(s)	775, 900
CfoI	GCGC	1 cut(s)	1106
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	229, 1292
Csp6I	GTAC	3 cut(s)	160, 591, 598
CviAII	CATG	8 cut(s)	47, 198, 776, 901, 1024, 1117, 1169, 1291
CviQI	GTAC	3 cut(s)	160, 591, 598
DpnI	GATC	2 cut(s)	167, 1301
DpnII	GATC	2 cut(s)	165, 1299
EaeI	YGGCCR	1 cut(s)	841
Eam1104I	CTCTTC	2 cut(s)	564, 1147
EarI	CTCTTC	2 cut(s)	564, 1147
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	46, 1116
Eco147I	AGGCCT	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	4 cut(s)	327, 570, 588, 1128
EcoICRI	GAGCTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	2 cut(s)	46, 1116
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	46, 1116
FaeI	CATG	8 cut(s)	50, 201, 779, 904, 1027, 1120, 1172, 1294
FalI	AAGNNNNNCTT	4 cut(s)	503, 535, 666, 698
FaqI	GGGAC	2 cut(s)	705, 1068
FatI	CATG	8 cut(s)	46, 197, 775, 900, 1023, 1116, 1168, 1290
FauNDI	CATATG	2 cut(s)	108, 712
FokI	GGATG	5 cut(s)	100, 121, 1175, 1250, 1307
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	356, 695
GlaI	GCGC	1 cut(s)	1105
GsuI	CTGGAG	2 cut(s)	1395, 1427
HaeII	RGCGCY	1 cut(s)	1107
HaeIII	GGCC	4 cut(s)	379, 705, 843, 879
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	2 cut(s)	229, 1292
HhaI	GCGC	1 cut(s)	1106
Hin1I	GRCGYC	1 cut(s)	1284
Hin1II	CATG	8 cut(s)	50, 201, 779, 904, 1027, 1120, 1172, 1294
Hin6I	GCGC	1 cut(s)	1104
HinP1I	GCGC	1 cut(s)	1104
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	3 cut(s)	95, 914, 920
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	4 cut(s)	242, 545, 586, 680
Hpy166II	GTNNAC	3 cut(s)	598, 1205, 1349
Hpy188I	TCNGA	7 cut(s)	26, 35, 148, 526, 919, 943, 991
Hpy188III	TCNNGA	7 cut(s)	776, 901, 1014, 1095, 1226, 1391, 1406
Hpy8I	GTNNAC	3 cut(s)	598, 1205, 1349
HpyAV	CCTTC	2 cut(s)	277, 405
HpyCH4III	ACNGT	3 cut(s)	595, 720, 1158
HpyCH4V	TGCA	9 cut(s)	56, 212, 253, 368, 431, 488, 893, 1073, 1328
HpyF10VI	GCNNNNNNNGC	8 cut(s)	448, 494, 545, 890, 1241, 1316, 1319, 1325
Hsp92I	GRCGYC	1 cut(s)	1284
Hsp92II	CATG	8 cut(s)	50, 201, 779, 904, 1027, 1120, 1172, 1294
HspAI	GCGC	1 cut(s)	1104
Kzo9I	GATC	2 cut(s)	165, 1299
LmnI	GCTCC	2 cut(s)	35, 494
Lsp1109I	GCAGC	9 cut(s)	40, 454, 526, 850, 871, 874, 877, 1297, 1306
LweI	GCATC	4 cut(s)	221, 337, 355, 440
MaeI	CTAG	2 cut(s)	356, 695
MaeIII	GTNAC	3 cut(s)	390, 642, 1148
MalI	GATC	2 cut(s)	167, 1301
MboI	GATC	2 cut(s)	165, 1299
MboII	GAAGA	5 cut(s)	257, 581, 916, 1134, 1292
MfeI	CAATTG	3 cut(s)	254, 624, 1187
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	843
MluCI	AATT	4 cut(s)	177, 254, 624, 1187
MluNI	TGGCCA	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	1140
Mox20I	TGGCCA	1 cut(s)	843
MscI	TGGCCA	1 cut(s)	843
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	905
Msp20I	TGGCCA	1 cut(s)	843
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	139, 860
MunI	CAATTG	3 cut(s)	254, 624, 1187
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	8 cut(s)	448, 494, 545, 890, 1241, 1316, 1319, 1325
NciI	CCSGG	1 cut(s)	139
NcoI	CCATGG	2 cut(s)	46, 1116
NdeI	CATATG	2 cut(s)	108, 712
NdeII	GATC	2 cut(s)	165, 1299
NlaIII	CATG	8 cut(s)	50, 201, 779, 904, 1027, 1120, 1172, 1294
NlaIV	GGNNCC	2 cut(s)	471, 496
NmeAIII	GCCGAG	1 cut(s)	905
NmuCI	GTSAC	1 cut(s)	642
NspV	TTCGAA	1 cut(s)	1032
PagI	TCATGA	2 cut(s)	775, 900
PceI	AGGCCT	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	95, 914, 920
PfoI	TCCNGGA	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	858
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	2 cut(s)	471, 496
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	3 cut(s)	161, 592, 599
RsaNI	GTAC	3 cut(s)	160, 591, 598
RseI	CAYNNNNRTG	1 cut(s)	905
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	165, 1299
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	139, 860
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	4 cut(s)	221, 337, 355, 440
SfcI	CTRYAG	1 cut(s)	1251
SfuI	TTCGAA	1 cut(s)	1032
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	905
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	4 cut(s)	177, 254, 624, 1187
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	356, 695
SstI	GAGCTC	1 cut(s)	40
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	137, 858
StyI	CCWWGG	2 cut(s)	46, 1116
TaaI	ACNGT	3 cut(s)	595, 720, 1158
TaqI	TCGA	2 cut(s)	1032, 1049
TasI	AATT	4 cut(s)	177, 254, 624, 1187
TatI	WGTACW	3 cut(s)	159, 590, 597
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	3 cut(s)	95, 914, 920
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	4 cut(s)	310, 480, 832, 1093
TseFI	GTSAC	1 cut(s)	642
TseI	GCWGC	9 cut(s)	53, 442, 539, 863, 884, 887, 890, 1310, 1319
Tsp45I	GTSAC	1 cut(s)	642
TspDTI	ATGAA	2 cut(s)	394, 917
TspRI	CASTG	4 cut(s)	310, 480, 832, 1093
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1114
XspI	CTAG	2 cut(s)	356, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.