RchiOBHm_Chr6g0303191

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001951
Physical Location & Seq
Forward (+)
63029663 .. 63032079
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27236

Sequence Viewer

Length: 1386 bp
ATGGAGGAAGTGGAGCTTGCCTCCAAATCCAGTGAGTTTTCGGACAACAACCCGCACTCGAAAACGGACCAACCAATGCATTCAAGCACGCAGAAGCCGTTCGGTGTTTCATTCCTTGGCCTCTTTGCTGCTGCTGACAAAATGGACCATCTGTTAATGCTTTTCGGAAGTTTCAGAGCGTGTATCCATGATGCTTTGTACTTGATCTATCTTGGAATTGTTCTTTTTATATCAGCATGGATAGGTGTTGCATCTTGGACGCAAACTGGTGAAAGGCAGATAGCTCGTTTGCGATTGAAGTGTCTTCAATCAGTTTTAAGAAAGGATATTAATTTTTTCGACACGGAAGCCAGAGACACTAACATCATTTTCCACATTTCAAGTGATGCAATACTAGTCCAAGATGCAATAGGTGACAAGACAGGCCACACTTTGCGCTACCTTTCTCAGTTCGTTGTGGGATTTCACATTGGATTTACATCTGTATGGCAGCTTACACTTCTTACTTTAGTTGTGGTTCCGCTGATAGCTATTGCAGGGGGAGCTTATACCATAATCATGTCCACCTTATCAGAAAAAGGTGAGGCTGCTTATGCTGAAGCTGGAAAAGTTACTGAAGAGGTACACACACAAAACTGCTTTGTGTATCTTGTTCTGGTTTGTTTTCCTCTCACCTTGTGCATAGTCCTCCAGGTTATTTCACAGATTCGTACTGTGTACTCATTTGTGGGAGAGGACAAAGCCATTGAAACATACTCTGAGTCACTTAACAAGGCACTCAAACTTGGTAAGAAAAGTGGGGTTGCTAAGGGAGTAGGTGTAGGCTTGACATATGGACTGTTTGCTGTTGGCCAAGCTACCCCAAACCTGGCTGCCATTTCTAAAGGCAGAGCTGCTGCTGCGAATATTATGAAGATGATTGAATCAGATTCTAACTCCTCTAAAATATTAGACAAGGGAGTAGAGTTGCCAAAAGTATCAGGGCAGATTGAGTTTTTTGATGTTTGTTTTGCCTATCCATCACAACCCAACATGGCGTTCGAAAACCTGAGCTTTTCAATTAGTGCTGGCAAGAACTTTGCAGTTGTCGGTCCCAGTGGTAAAATACTTTTGGATGGACATGATATTTCTACTCTCCAATTGAGATGGTTGCGAGAGCAGATGGGATTGGTAAGTCAAGAACCAGCACTGTTTGCTACTACTATAGCTGACAACATTATGTTTGGTAAAGAAGACGCCAACATGGATCAGATTATAGAAGCTGCTAAAGCTGCCAATGCACATTCTTTTATTCAAGGTTTACCTGATGGCTACAACACTTGGGCTGGAGAGAATAGCTATTGCAAGAGCAGTTCTAAGAAACCCGAAAATATTACTCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

461

Amino Acids

50.18

Weight (kDa)

5.84

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 56 - 208 7.8e-30 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 521
AclWI GGATC 1 cut(s) 1254
AcoI YGGCCR 1 cut(s) 850
AcuI CTGAAG 2 cut(s) 618, 636
AcyI GRCGYC 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 678
AfaI GTAC 4 cut(s) 200, 624, 712, 719
AfiI CCNNNNNNNGG 1 cut(s) 868
AgsI TTSAA 8 cut(s) 84, 298, 308, 381, 749, 923, 1059, 1295
AhlI ACTAGT 1 cut(s) 394
AjnI CCWGG 2 cut(s) 690, 867
AjuI GAANNNNNNNTTGG 2 cut(s) 1022, 1054
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 1254
AoxI GGCC 3 cut(s) 118, 424, 850
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 67, 145, 1091
AsuHPI GGTGA 4 cut(s) 281, 425, 593, 664
AsuII TTCGAA 1 cut(s) 1041
AvaII GGWCC 3 cut(s) 67, 145, 1091
BalI TGGCCA 1 cut(s) 852
BbsI GAAGAC 2 cut(s) 296, 1239
BccI CCATC 6 cut(s) 156, 1027, 1109, 1140, 1156, 1301
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 692, 869
BciVI GTATCC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 1203
BfuI GTATCC 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 692, 869
Bme18I GGWCC 3 cut(s) 67, 145, 1091
BmgT120I GGNCC 3 cut(s) 67, 145, 1091
BmiI GGNNCC 2 cut(s) 519, 1093
BmrFI CCNGG 2 cut(s) 692, 869
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 4 cut(s) 181, 260, 376, 394
BmuI ACTGGG 1 cut(s) 1089
BpiI GAAGAC 2 cut(s) 296, 1239
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 674, 1347
Bpu10I CCTNAGC 2 cut(s) 807, 1049
Bpu14I TTCGAA 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 478
BsaHI GRCGYC 1 cut(s) 1236
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse1I ACTGG 3 cut(s) 30, 271, 1095
Bse8I GATNNNNATC 1 cut(s) 478
BseBI CCWGG 2 cut(s) 692, 869
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 1120
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 461, 750, 1040
BseNI ACTGG 3 cut(s) 30, 271, 1095
BseRI GAGGAG 1 cut(s) 928
BshFI GGCC 3 cut(s) 120, 426, 852
BslFI GGGAC 1 cut(s) 1077
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 1077
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 3 cut(s) 120, 426, 852
Bsp119I TTCGAA 1 cut(s) 1041
Bsp143I GATC 2 cut(s) 204, 1246
BspACI CCGC 2 cut(s) 53, 521
BspANI GGCC 3 cut(s) 120, 426, 852
BspCNI CTCAG 3 cut(s) 460, 751, 1041
BspLI GGNNCC 2 cut(s) 519, 1093
BspPI GGATC 1 cut(s) 1254
BspT104I TTCGAA 1 cut(s) 1041
BsrI ACTGG 3 cut(s) 30, 271, 1095
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 204, 1246
BssNI GRCGYC 1 cut(s) 1236
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 692, 869
Bst4CI ACNGT 3 cut(s) 715, 840, 1191
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 1236
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstBI TTCGAA 1 cut(s) 1041
BstC8I GCNNGC 3 cut(s) 18, 89, 1069
BstDEI CTNAG 5 cut(s) 447, 759, 807, 1049, 1356
BstF5I GGATG 1 cut(s) 1120
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 2 cut(s) 207, 1249
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 204, 1246
BstMWI GCNNNNNNNGC 7 cut(s) 542, 593, 899, 1193, 1268, 1271, 1277
BstNI CCWGG 2 cut(s) 692, 869
BstSCI CCNGG 2 cut(s) 690, 867
BstSFI CTRYAG 1 cut(s) 1203
BstV2I GAAGAC 2 cut(s) 296, 1239
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 120, 426, 852
BtsCI GGATG 1 cut(s) 1120
BtsIMutI CAGTG 3 cut(s) 37, 1102, 1187
Cac8I GCNNGC 3 cut(s) 18, 89, 1069
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 67, 145, 1091
CseI GACGC 2 cut(s) 268, 1244
Csp6I GTAC 4 cut(s) 199, 623, 711, 718
CviAII CATG 6 cut(s) 188, 237, 559, 1033, 1121, 1243
CviQI GTAC 4 cut(s) 199, 623, 711, 718
DdeI CTNAG 5 cut(s) 447, 759, 807, 1049, 1356
DpnI GATC 2 cut(s) 206, 1248
DpnII GATC 2 cut(s) 204, 1246
DraIII CACNNNGTG 1 cut(s) 678
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 3 cut(s) 67, 145, 1091
Eco57I CTGAAG 2 cut(s) 618, 636
EcoRII CCWGG 2 cut(s) 690, 867
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 6 cut(s) 191, 240, 562, 1036, 1124, 1246
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 1 cut(s) 1077
FatI CATG 6 cut(s) 187, 236, 558, 1032, 1120, 1242
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 832
FokI GGATG 1 cut(s) 1127
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 437
GsuI CTGGAG 2 cut(s) 674, 1347
HaeIII GGCC 3 cut(s) 120, 426, 852
HgaI GACGC 2 cut(s) 268, 1244
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 1236
Hin1II CATG 6 cut(s) 191, 240, 562, 1036, 1124, 1246
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HinfI GANTC 4 cut(s) 706, 761, 923, 929
HphI GGTGA 4 cut(s) 281, 425, 593, 664
Hpy166II GTNNAC 4 cut(s) 564, 625, 718, 1301
Hpy188I TCNGA 7 cut(s) 43, 167, 176, 574, 760, 928, 1251
Hpy188III TCNNGA 1 cut(s) 1178
Hpy8I GTNNAC 4 cut(s) 564, 625, 718, 1301
HpyCH4III ACNGT 3 cut(s) 715, 840, 1191
HpyCH4V TGCA 9 cut(s) 79, 251, 389, 407, 536, 681, 1082, 1280, 1344
HpyF10VI GCNNNNNNNGC 7 cut(s) 542, 593, 899, 1193, 1268, 1271, 1277
HpyF3I CTNAG 5 cut(s) 447, 759, 807, 1049, 1356
Hsp92I GRCGYC 1 cut(s) 1236
Hsp92II CATG 6 cut(s) 191, 240, 562, 1036, 1124, 1246
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 204, 1246
LmnI GCTCC 2 cut(s) 13, 542
LweI GCATC 4 cut(s) 181, 260, 376, 394
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 3 cut(s) 413, 610, 762
MalI GATC 2 cut(s) 206, 1248
MboI GATC 2 cut(s) 204, 1246
MboII GAAGA 4 cut(s) 296, 629, 925, 1244
MfeI CAATTG 1 cut(s) 1139
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 4 cut(s) 216, 331, 1059, 1139
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 1 cut(s) 770
MnlI CCTC 8 cut(s) 31, 131, 577, 613, 678, 698, 727, 949
Mox20I TGGCCA 1 cut(s) 852
Mph1103I ATGCAT 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 852
MseI TTAA 4 cut(s) 155, 317, 330, 768
MslI CAYNNNNRTG 2 cut(s) 484, 557
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 1 cut(s) 523
MspR9I CCNGG 2 cut(s) 692, 869
MunI CAATTG 1 cut(s) 1139
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 692, 869
MwoI GCNNNNNNNGC 7 cut(s) 542, 593, 899, 1193, 1268, 1271, 1277
NdeI CATATG 1 cut(s) 832
NdeII GATC 2 cut(s) 204, 1246
NlaIII CATG 6 cut(s) 191, 240, 562, 1036, 1124, 1246
NlaIV GGNNCC 2 cut(s) 519, 1093
NmuCI GTSAC 2 cut(s) 413, 762
NsiI ATGCAT 1 cut(s) 81
NspV TTCGAA 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 706, 923, 929
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
PshBI ATTAAT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 690, 867
PspGI CCWGG 2 cut(s) 690, 867
PspN4I GGNNCC 2 cut(s) 519, 1093
PspPI GGNCC 3 cut(s) 67, 145, 1091
RsaI GTAC 4 cut(s) 200, 624, 712, 719
RsaNI GTAC 4 cut(s) 199, 623, 711, 718
RseI CAYNNNNRTG 2 cut(s) 484, 557
SaqAI TTAA 4 cut(s) 155, 317, 330, 768
Sau3AI GATC 2 cut(s) 204, 1246
Sau96I GGNCC 3 cut(s) 67, 145, 1091
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 2 cut(s) 692, 869
SfaNI GCATC 4 cut(s) 181, 260, 376, 394
SfcI CTRYAG 1 cut(s) 1203
SfuI TTCGAA 1 cut(s) 1041
SinI GGWCC 3 cut(s) 67, 145, 1091
SmiMI CAYNNNNRTG 2 cut(s) 484, 557
SpeI ACTAGT 1 cut(s) 394
Sse9I AATT 4 cut(s) 216, 331, 1059, 1139
SsiI CCGC 2 cut(s) 53, 521
SspI AATATT 3 cut(s) 907, 948, 1372
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 690, 867
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 715, 840, 1191
TaqI TCGA 3 cut(s) 59, 339, 1041
TaqII GACCGA 1 cut(s) 1079
TasI AATT 4 cut(s) 216, 331, 1059, 1139
TatI WGTACW 2 cut(s) 198, 717
TfiI GAWTC 3 cut(s) 706, 923, 929
Tru1I TTAA 4 cut(s) 155, 317, 330, 768
Tru9I TTAA 4 cut(s) 155, 317, 330, 768
TscAI CASTG 3 cut(s) 37, 1102, 1194
TseFI GTSAC 2 cut(s) 413, 762
Tsp45I GTSAC 2 cut(s) 413, 762
TspDTI ATGAA 2 cut(s) 99, 926
TspGWI ACGGA 2 cut(s) 80, 359
TspRI CASTG 3 cut(s) 37, 1102, 1194
VpaK11BI GGWCC 3 cut(s) 67, 145, 1091
VspI ATTAAT 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.