Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005576

Physical Location & Seq

Genomic Coordinates Reverse (-)

19944707 .. 19947333

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1242500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGCGCGTCAAGGTTCATAAAGTGCGTCACGGTTGGGGACGGGGCTGTGGGCAAGACGTGTCTGCTTATCTCCTACACCAGCAACACCTTCCCCACCGATTTGGATTACGTGCCAACTGTTTTCGACAATTTCAGTGCAAACGTGGTTGTCAATGGGAGCACTGTTAACCTGGGGTTATGGGATACAGCTGGACAGGAGGATTACAATAGATTAAGACCTTTGAGTTATCGTGGTGCTGATGTGTTTATACTGGCGTTCTCTCTCATCAGCAAAGCCAGCTACGAAAATGTGTCCAAGAAGTGGATCCCAGAATTGAAGCATTATGCGCCTGGGGTTCCAATCATTCTTGTTGGAACAAAGCTTGATCTTCGGGACGACAAGCAGTTCTTTATTGATCATCCCGGTGCTGTCCCAATTACTACCGCTCAAGGAGAGGAGCTCAGGAAGCTAATTGGAGCACCAGCTTATATCGAGTGCAGTTCAAAAACTCAGCAGAATGTGAAAGGGGTCTTTGACGCAGCCATAAGGGTTGTACTTCAACCTCCGAAGCAGAAGAAAAAGAAAGGCAAAGGGCAGAAGGCATGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04071 ko04072 ko04144 ko04145 ko04150 ko04151 ko04270 ko04310 ko04350 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04611 ko04620 ko04621 ko04650 ko04660 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04921 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05130 ko05131 ko05132 ko05133 ko05152 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04011 map04013 map04014 map04015 map04022 map04024 map04062 map04071 map04072 map04144 map04145 map04150 map04151 map04270 map04310 map04350 map04360 map04370 map04380 map04510 map04520 map04530 map04611 map04620 map04621 map04650 map04660 map04662 map04664 map04666 map04670 map04722 map04810 map04921 map04932 map04933 map04972 map05014 map05100 map05120 map05130 map05131 map05132 map05133 map05152 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

DUF630 DUF632 Ras

Protein Analysis

200

Amino Acids

21.77

Weight (kDa)

9.21

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 180	3.1e-47	Ras family
Roc	PF08477	8 - 123	2.2e-22	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17800 AT2G17800 AT3G51300 AT4G35950
fragaria_vesca	FvH4_1g11420 FvH4_2g38190
malus_domestica	MD02G1126300.v1.1 MD08G1010300.v1.1 MD15G1242500.v1.1
prunus_persica	Prupe.1G362900_v2.0.a1 Prupe.7G171700_v2.0.a1
pyrus_communis	pycom02g09860 pycom15g00860 pycom15g21370
rosa_chinensis	RchiOBHm_Chr2g0098991 RchiOBHm_Chr6g0303291
rosa_multiflora	Rmu_co8192584.1_g000001 Rmu_sc0000818.1_g000010 Rmu_sc0036924.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143520 Rroxscaffold_7G00164900
rosa_rugosa	Rorug02G0075500 Rorug06G0319900 Rorug06G0320000
rosa_samantha	Rh2DG129300 Rh6CG446500
rosa_wichuraiana	Rw2G009600 Rw6G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	428
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	301, 314
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	319, 486, 542
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	171, 331
AluBI	AGCT	6 cut(s)	191, 282, 364, 442, 451, 467
AluI	AGCT	6 cut(s)	191, 282, 364, 442, 451, 467
Alw21I	GWGCWC	3 cut(s)	164, 444, 463
AlwI	GGATC	2 cut(s)	301, 314
ApeKI	GCWGC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	8, 331
AsuC2I	CCSGG	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	3 cut(s)	164, 444, 463
BbvI	GCAGC	1 cut(s)	533
BciT130I	CCWGG	2 cut(s)	173, 333
BciVI	GTATCC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	3 cut(s)	173, 333, 405
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	308, 339
BmrFI	CCNGG	3 cut(s)	173, 333, 405
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
Bpu10I	CCTNAGC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	172, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	173, 333
BseDI	CCNNGG	2 cut(s)	172, 332
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	457, 506
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	8
BsiHKAI	GWGCWC	3 cut(s)	164, 444, 463
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	53, 389, 398
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmFI	GGGAC	3 cut(s)	53, 389, 398
Bsp1286I	GDGCHC	3 cut(s)	164, 444, 463
Bsp143I	GATC	3 cut(s)	306, 367, 397
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	456, 505
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	308, 339
BspPI	GGATC	2 cut(s)	301, 314
BsrBI	CCGCTC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	172, 332
BssMI	GATC	3 cut(s)	306, 367, 397
Bst2UI	CCWGG	2 cut(s)	173, 333
Bst4CI	ACNGT	3 cut(s)	34, 121, 166
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	280, 586
BstDEI	CTNAG	2 cut(s)	443, 492
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 331
BstKTI	GATC	3 cut(s)	309, 370, 400
BstMBI	GATC	3 cut(s)	306, 367, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 328, 448
BstNI	CCWGG	2 cut(s)	173, 333
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	3 cut(s)	171, 331, 403
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	142, 162
Cac8I	GCNNGC	2 cut(s)	280, 586
CfoI	GCGC	2 cut(s)	8, 331
CseI	GACGC	2 cut(s)	16, 527
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	1 cut(s)	585
CviJI	RGCY	9 cut(s)	47, 191, 278, 282, 364, 442, 451, 467, 524
CviKI_1	RGCY	9 cut(s)	47, 191, 278, 282, 364, 442, 451, 467, 524
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	443, 492
DpnI	GATC	3 cut(s)	308, 369, 399
DpnII	GATC	3 cut(s)	306, 367, 397
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	171, 331
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	1 cut(s)	588
FaiI	YATR	8 cut(s)	20, 181, 251, 327, 471, 527, 586, 593
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	3 cut(s)	53, 389, 398
FatI	CATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	522
GlaI	GCGC	2 cut(s)	7, 330
GluI	GCNGC	1 cut(s)	522
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	2 cut(s)	16, 527
HhaI	GCGC	2 cut(s)	8, 331
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	2 cut(s)	6, 329
HinP1I	GCGC	2 cut(s)	6, 329
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	362
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	405
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	2 cut(s)	374, 445
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	100, 574
HpyCH4III	ACNGT	3 cut(s)	34, 121, 166
HpyCH4IV	ACGT	3 cut(s)	59, 111, 144
HpyCH4V	TGCA	2 cut(s)	140, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 328, 448
HpyF3I	CTNAG	2 cut(s)	443, 492
HpySE526I	ACGT	3 cut(s)	59, 111, 144
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	2 cut(s)	6, 329
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	306, 367, 397
LmnI	GCTCC	4 cut(s)	159, 439, 458, 593
Lsp1109I	GCAGC	1 cut(s)	533
MaeII	ACGT	3 cut(s)	59, 111, 144
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	308, 369, 399
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	3 cut(s)	306, 367, 397
MboII	GAAGA	2 cut(s)	362, 568
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	164, 444, 463
MluCI	AATT	4 cut(s)	130, 314, 417, 453
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	193, 430, 555
MseI	TTAA	2 cut(s)	168, 215
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	3 cut(s)	173, 333, 405
MvaI	CCWGG	2 cut(s)	173, 333
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	279, 328, 448
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	306, 367, 397
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	2 cut(s)	308, 339
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	588
PflMI	CCANNNNNTGG	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	171, 331
PspGI	CCWGG	2 cut(s)	171, 331
PspN4I	GGNNCC	2 cut(s)	308, 339
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	168, 215
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	306, 367, 397
ScrFI	CCNGG	3 cut(s)	173, 333, 405
SduI	GDGCHC	3 cut(s)	164, 444, 463
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	588
Sse9I	AATT	4 cut(s)	130, 314, 417, 453
SsiI	CCGC	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	171, 331, 403
TaaI	ACNGT	3 cut(s)	34, 121, 166
TaiI	ACGT	3 cut(s)	62, 114, 147
TaqI	TCGA	2 cut(s)	126, 474
TasI	AATT	4 cut(s)	130, 314, 417, 453
TatI	WGTACW	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	168, 215
Tru9I	TTAA	2 cut(s)	168, 215
TscAI	CASTG	2 cut(s)	142, 169
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	142, 169
Van91I	CCANNNNNTGG	1 cut(s)	303
XceI	RCATGY	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.