AT3G51300
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
19042858 .. 19044393
1536 bp
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UTR
Exon/CDS
Intron
AT3G51300.1

Sequence Viewer

Length: 594 bp
ATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTAATGGAAGCACTGTGAATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGTCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGTGCTGTTCCGATTACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATGCAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATCCGAGTGGTGTTGCAACCGCCAAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCATGCTCCATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.62

Weight (kDa)

9.21

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 1.5e-50 Ras family
Roc PF08477 8 - 121 6e-24 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 1 cut(s) 323
AciI CCGC 2 cut(s) 503, 539
AclWI GGATC 2 cut(s) 295, 308
AfeI AGCGCT 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 2 cut(s) 325, 397
AluBI AGCT 3 cut(s) 47, 358, 436
AluI AGCT 3 cut(s) 47, 358, 436
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 295, 308
Aor51HI AGCGCT 1 cut(s) 7
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 515
AspLEI GCGC 3 cut(s) 8, 325, 571
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 527
BccI CCATC 4 cut(s) 35, 344, 402, 527
BciT130I CCWGG 2 cut(s) 327, 399
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 3 cut(s) 305, 327, 399
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 3 cut(s) 305, 327, 399
Bpu10I CCTNAGC 2 cut(s) 423, 437
BpuEI CTTGAG 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 273
BseBI CCWGG 2 cut(s) 327, 399
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 394, 519
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 209, 428, 437
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 2 cut(s) 191, 317
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 191, 317
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 2 cut(s) 300, 361
BspACI CCGC 2 cut(s) 503, 539
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 3 cut(s) 210, 429, 436
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 2 cut(s) 295, 308
BspQI GCTCTTC 1 cut(s) 554
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 300, 361
Bst2UI CCWGG 2 cut(s) 327, 399
Bst4CI ACNGT 5 cut(s) 34, 115, 160, 227, 381
Bst6I CTCTTC 1 cut(s) 554
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 218, 423, 437
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 394, 519
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 3 cut(s) 8, 325, 571
BstKTI GATC 2 cut(s) 303, 364
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 300, 361
BstMWI GCNNNNNNNGC 2 cut(s) 442, 575
BstNI CCWGG 2 cut(s) 327, 399
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 303, 325, 397
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 300
BstXI CCANNNNNNTGG 2 cut(s) 142, 526
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 394, 519
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 4 cut(s) 136, 156, 180, 215
Cac8I GCNNGC 1 cut(s) 580
CfoI GCGC 3 cut(s) 8, 325, 571
CseI GACGC 1 cut(s) 521
CviAII CATG 1 cut(s) 579
CviJI RGCY 6 cut(s) 47, 251, 272, 358, 436, 518
CviKI_1 RGCY 6 cut(s) 47, 251, 272, 358, 436, 518
DdeI CTNAG 3 cut(s) 218, 423, 437
DpnI GATC 2 cut(s) 302, 363
DpnII GATC 2 cut(s) 300, 361
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco47III AGCGCT 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 325, 397
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 1 cut(s) 582
FaiI YATR 4 cut(s) 105, 279, 580, 592
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FaqI GGGAC 2 cut(s) 191, 317
FatI CATG 1 cut(s) 578
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 2 cut(s) 381, 506
Fsp4HI GCNGC 1 cut(s) 516
GlaI GCGC 3 cut(s) 7, 324, 570
GluI GCNGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 305
HgaI GACGC 1 cut(s) 521
HhaI GCGC 3 cut(s) 8, 325, 571
Hin1II CATG 1 cut(s) 582
Hin6I GCGC 3 cut(s) 6, 323, 569
HinP1I GCGC 3 cut(s) 6, 323, 569
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 53, 411, 524
Hpy188III TCNNGA 2 cut(s) 368, 488
HpyAV CCTTC 3 cut(s) 262, 493, 568
HpyCH4III ACNGT 5 cut(s) 34, 115, 160, 227, 381
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 185, 474, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 575
HpyF3I CTNAG 3 cut(s) 218, 423, 437
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 582
HspAI GCGC 3 cut(s) 6, 323, 569
Kzo9I GATC 2 cut(s) 300, 361
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 5 cut(s) 44, 230, 433, 452, 587
LpnPI CCDG 8 cut(s) 171, 286, 312, 318, 339, 384, 410, 411
Lsp1109I GCAGC 1 cut(s) 527
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 28, 221
MalI GATC 2 cut(s) 302, 363
MboI GATC 2 cut(s) 300, 361
MboII GAAGA 5 cut(s) 356, 562, 565, 568, 571
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 124
MmeI TCCRAC 2 cut(s) 31, 328
MnlI CCTC 4 cut(s) 6, 187, 424, 432
MseI TTAA 2 cut(s) 147, 209
MslI CAYNNNNRTG 2 cut(s) 399, 524
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 3 cut(s) 305, 327, 399
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 327, 399
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 442, 575
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 300, 361
NlaIII CATG 1 cut(s) 582
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 582
PaeI GCATGC 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 554
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 325, 397
PspGI CCWGG 2 cut(s) 325, 397
PspN4I GGNNCC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 300
RseI CAYNNNNRTG 2 cut(s) 399, 524
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 2 cut(s) 147, 209
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 2 cut(s) 300, 361
ScrFI CCNGG 3 cut(s) 305, 327, 399
SduI GDGCHC 1 cut(s) 457
SetI ASST 6 cut(s) 17, 49, 288, 360, 438, 460
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 399, 524
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SphI GCATGC 1 cut(s) 582
Sse9I AATT 1 cut(s) 124
SsiI CCGC 2 cut(s) 503, 539
StyD4I CCNGG 3 cut(s) 303, 325, 397
TaaI ACNGT 5 cut(s) 34, 115, 160, 227, 381
TaiI ACGT 1 cut(s) 288
TaqI TCGA 5 cut(s) 11, 120, 367, 390, 468
TasI AATT 1 cut(s) 124
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 147, 209
Tru9I TTAA 2 cut(s) 147, 209
TscAI CASTG 4 cut(s) 136, 163, 187, 222
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 232, 294
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 136, 163, 187, 222
Van91I CCANNNNNTGG 1 cut(s) 297
XceI RCATGY 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.