Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005576

Physical Location & Seq

Genomic Coordinates Reverse (-)

15359808 .. 15361647

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGCGTCAAGGTTCATAAAGTGCGTCACGGTTGGGGACGGGGCTGTGGGCAAGACGTGTCTGCTTATCTCCTACACCAGCAACACCTTCCCCACCGATTACGTGCCAACTGTTTTCGACAATTTCAGTGCAAACGTGGTCGTCAATGGGAGCACTGTTAACCTGGGGTTATGGGATACAGCTGGACAGGAGGATTACAATAGATTAAGACCTTTGAGTTATCGTGGTGCTGATGTGTTTATACTGGCGTTCTCTCTCATCAGCAAAGCCAGCTACGAAAATGTGTCCAAGAAGTGGATCCCAGAATTGAAGCATTATGCGCCTGGTGTTCCAATCATTCTTGTTGGAACAAAGCTTGATCTTCGGGACGACAAGCAGTTCTTTATTGATCATCCCGGTGCTGTCCCAATTACTACCGCTCAAGGAGAGGAACTCAGGAAGCTAATTGGAGCACCAGCTTATATCGAGTGCAGTTCAAAAACTCAGCAGAATGTGAAAGGGGTCTTTGACGCAGCCATAAGGGTTGTACTTCAACCTCCGAAGCAGAAGAAAAAGAAAGGCAAAGGGCAGAAGGCATGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04071 ko04072 ko04144 ko04145 ko04150 ko04151 ko04270 ko04310 ko04350 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04611 ko04620 ko04621 ko04650 ko04660 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04921 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05130 ko05131 ko05132 ko05133 ko05152 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04011 map04013 map04014 map04015 map04022 map04024 map04062 map04071 map04072 map04144 map04145 map04150 map04151 map04270 map04310 map04350 map04360 map04370 map04380 map04510 map04520 map04530 map04611 map04620 map04621 map04650 map04660 map04662 map04664 map04666 map04670 map04722 map04810 map04921 map04932 map04933 map04972 map05014 map05100 map05120 map05130 map05131 map05132 map05133 map05152 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

DUF630 DUF632 Ras

Protein Analysis

198

Amino Acids

21.54

Weight (kDa)

9.32

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.7e-49	Ras family
Roc	PF08477	8 - 121	4.3e-24	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17800 AT2G17800 AT3G51300 AT4G35950
fragaria_vesca	FvH4_1g11420 FvH4_2g38190
malus_domestica	MD02G1126300.v1.1 MD08G1010300.v1.1 MD15G1242500.v1.1
prunus_persica	Prupe.1G362900_v2.0.a1 Prupe.7G171700_v2.0.a1
pyrus_communis	pycom02g09860 pycom15g00860 pycom15g21370
rosa_chinensis	RchiOBHm_Chr2g0098991 RchiOBHm_Chr6g0303291
rosa_multiflora	Rmu_co8192584.1_g000001 Rmu_sc0000818.1_g000010 Rmu_sc0036924.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143520 Rroxscaffold_7G00164900
rosa_rugosa	Rorug02G0075500 Rorug06G0319900 Rorug06G0320000
rosa_samantha	Rh2DG129300 Rh6CG446500
rosa_wichuraiana	Rw2G009600 Rw6G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	422
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	295, 308
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	313, 480, 536
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	165, 325
AluBI	AGCT	5 cut(s)	185, 276, 358, 445, 461
AluI	AGCT	5 cut(s)	185, 276, 358, 445, 461
Alw21I	GWGCWC	2 cut(s)	158, 457
AlwI	GGATC	2 cut(s)	295, 308
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	8, 325
AsuC2I	CCSGG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	158, 457
BbvI	GCAGC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	167, 327
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	3 cut(s)	167, 327, 399
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	3 cut(s)	167, 327, 399
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	167, 327
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	451, 500
BseNI	ACTGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	8
BsiHKAI	GWGCWC	2 cut(s)	158, 457
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	3 cut(s)	53, 383, 392
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmFI	GGGAC	3 cut(s)	53, 383, 392
Bsp1286I	GDGCHC	2 cut(s)	158, 457
Bsp143I	GATC	3 cut(s)	300, 361, 391
BspACI	CCGC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	450, 499
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	295, 308
BsrBI	CCGCTC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	300, 361, 391
Bst2UI	CCWGG	2 cut(s)	167, 327
Bst4CI	ACNGT	3 cut(s)	34, 115, 160
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	274, 580
BstDEI	CTNAG	2 cut(s)	437, 486
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 325
BstKTI	GATC	3 cut(s)	303, 364, 394
BstMBI	GATC	3 cut(s)	300, 361, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 322
BstNI	CCWGG	2 cut(s)	167, 327
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	3 cut(s)	165, 325, 397
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	136, 156
Cac8I	GCNNGC	2 cut(s)	274, 580
CfoI	GCGC	2 cut(s)	8, 325
CseI	GACGC	2 cut(s)	16, 521
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	1 cut(s)	579
CviJI	RGCY	8 cut(s)	47, 185, 272, 276, 358, 445, 461, 518
CviKI_1	RGCY	8 cut(s)	47, 185, 272, 276, 358, 445, 461, 518
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	2 cut(s)	437, 486
DpnI	GATC	3 cut(s)	302, 363, 393
DpnII	GATC	3 cut(s)	300, 361, 391
EcoRII	CCWGG	2 cut(s)	165, 325
FaeI	CATG	1 cut(s)	582
FaiI	YATR	8 cut(s)	20, 175, 245, 321, 465, 521, 580, 587
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	3 cut(s)	53, 383, 392
FatI	CATG	1 cut(s)	578
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	516
GlaI	GCGC	2 cut(s)	7, 324
GluI	GCNGC	1 cut(s)	516
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	2 cut(s)	16, 521
HhaI	GCGC	2 cut(s)	8, 325
Hin1II	CATG	1 cut(s)	582
Hin6I	GCGC	2 cut(s)	6, 323
HinP1I	GCGC	2 cut(s)	6, 323
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	356
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	2 cut(s)	368, 439
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	100, 568
HpyCH4III	ACNGT	3 cut(s)	34, 115, 160
HpyCH4IV	ACGT	3 cut(s)	59, 105, 138
HpyCH4V	TGCA	2 cut(s)	134, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 322
HpyF3I	CTNAG	2 cut(s)	437, 486
HpySE526I	ACGT	3 cut(s)	59, 105, 138
Hsp92II	CATG	1 cut(s)	582
HspAI	GCGC	2 cut(s)	6, 323
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	300, 361, 391
LmnI	GCTCC	3 cut(s)	153, 452, 587
Lsp1109I	GCAGC	1 cut(s)	527
MaeII	ACGT	3 cut(s)	59, 105, 138
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	302, 363, 393
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	3 cut(s)	300, 361, 391
MboII	GAAGA	2 cut(s)	356, 562
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	158, 457
MluCI	AATT	4 cut(s)	124, 308, 411, 447
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	3 cut(s)	187, 424, 549
MseI	TTAA	2 cut(s)	162, 209
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	3 cut(s)	167, 327, 399
MvaI	CCWGG	2 cut(s)	167, 327
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	273, 322
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	300, 361, 391
NlaIII	CATG	1 cut(s)	582
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	582
PaeI	GCATGC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	165, 325
PspGI	CCWGG	2 cut(s)	165, 325
PspN4I	GGNNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	162, 209
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	3 cut(s)	300, 361, 391
ScrFI	CCNGG	3 cut(s)	167, 327, 399
SduI	GDGCHC	2 cut(s)	158, 457
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	4 cut(s)	124, 308, 411, 447
SsiI	CCGC	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	165, 325, 397
TaaI	ACNGT	3 cut(s)	34, 115, 160
TaiI	ACGT	3 cut(s)	62, 108, 141
TaqI	TCGA	2 cut(s)	120, 468
TasI	AATT	4 cut(s)	124, 308, 411, 447
TatI	WGTACW	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	162, 209
Tru9I	TTAA	2 cut(s)	162, 209
TscAI	CASTG	2 cut(s)	136, 163
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	136, 163
Van91I	CCANNNNNTGG	1 cut(s)	297
XceI	RCATGY	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.