Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005576

Physical Location & Seq

Genomic Coordinates Reverse (-)

10933931 .. 10936918

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG129300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGCGCGTCCAGGTTCATAAAGTGTGTGACTGTTGGCGACGGAGCTGTGGGCAAGACGTGTCTGCTTATCTCCTACACCAGCAACACCTTCCCCACCGATTACGTGCCTACTGTTTTCGACAATTTTAGTGCAAACGTGGTTGTCAATGGGAGCACTGTTAACCTTGGGTTGTGGGATACAGCTGGACAGGAGGATTATAATAGATTAAGACCCTTGAGTTATCGTGGGGCTGATGTTTTTATACTGGCATTCTCCTTGATTAGCAAGGCCAGCTATGAAAATGTGTCCAAGAAGTGGATCCCGGAATTGAAGCACTATGCGCCTGGTGTTCCAATCATTCTTGTTGGAACCAAACTTGATCTGCGGGATGACAAGCAGTTCTTTATTGACCATCCGGGTGCTGTGCCTATTACTACCGCTCAAGGAGAGGAGCTCAGGAAGCTAATTGGAGCACCAGCATACATTGAGTGCAGTTCAAAAACACAGCAGGTATTTGAAATCTGGACTTGTAACTGCATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04071 ko04072 ko04144 ko04145 ko04150 ko04151 ko04270 ko04310 ko04350 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04611 ko04620 ko04621 ko04650 ko04660 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04921 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05130 ko05131 ko05132 ko05133 ko05152 ko05167 ko05200 ko05203 ko05205 ko05206 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04011 map04013 map04014 map04015 map04022 map04024 map04062 map04071 map04072 map04144 map04145 map04150 map04151 map04270 map04310 map04350 map04360 map04370 map04380 map04510 map04520 map04530 map04611 map04620 map04621 map04650 map04660 map04662 map04664 map04666 map04670 map04722 map04810 map04921 map04932 map04933 map04972 map05014 map05100 map05120 map05130 map05131 map05132 map05133 map05152 map05167 map05200 map05203 map05205 map05206 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

DUF630 DUF632 Ras

Protein Analysis

175

Amino Acids

19.3

Weight (kDa)

6.09

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 165	1.7e-45	Ras family
Roc	PF08477	8 - 121	3e-24	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17800 AT2G17800 AT3G51300 AT4G35950
fragaria_vesca	FvH4_1g11420 FvH4_2g38190
malus_domestica	MD02G1126300.v1.1 MD08G1010300.v1.1 MD15G1242500.v1.1
prunus_persica	Prupe.1G362900_v2.0.a1 Prupe.7G171700_v2.0.a1
pyrus_communis	pycom02g09860 pycom15g00860 pycom15g21370
rosa_chinensis	RchiOBHm_Chr2g0098991 RchiOBHm_Chr6g0303291
rosa_multiflora	Rmu_co8192584.1_g000001 Rmu_sc0000818.1_g000010 Rmu_sc0036924.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143520 Rroxscaffold_7G00164900
rosa_rugosa	Rorug02G0075500 Rorug06G0319900 Rorug06G0320000
rosa_samantha	Rh2DG129300 Rh6CG446500
rosa_wichuraiana	Rw2G009600 Rw6G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	481
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	422
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	367, 420
AclWI	GGATC	2 cut(s)	295, 308
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	313, 480, 500
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	11, 325
AluBI	AGCT	5 cut(s)	47, 185, 276, 436, 445
AluI	AGCT	5 cut(s)	47, 185, 276, 436, 445
Alw21I	GWGCWC	3 cut(s)	158, 438, 457
AlwI	GGATC	2 cut(s)	295, 308
AoxI	GGCC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	8, 325
AsuC2I	CCSGG	2 cut(s)	305, 399
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	158, 438, 457
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	13, 327
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	305, 399
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	172
Bme1390I	CCNGG	4 cut(s)	13, 305, 327, 399
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	302, 352
BmrFI	CCNGG	4 cut(s)	13, 305, 327, 399
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	238, 408
BpuMI	CCSGG	2 cut(s)	305, 399
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	13, 327
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	376, 394
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	3 cut(s)	158, 438, 457
BsiSI	CCGG	2 cut(s)	305, 398
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmI	GAATGC	2 cut(s)	251, 519
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	158, 438, 457
Bsp143I	GATC	2 cut(s)	300, 361
BspACI	CCGC	2 cut(s)	367, 420
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	302, 352
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	295, 308
BsrBI	CCGCTC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	300, 361
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	13, 327
Bst4CI	ACNGT	3 cut(s)	34, 115, 160
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	376, 394
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 325
BstKTI	GATC	2 cut(s)	303, 364
BstMBI	GATC	2 cut(s)	300, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 322, 442
BstNI	CCWGG	2 cut(s)	13, 327
BstSCI	CCNGG	4 cut(s)	11, 303, 325, 397
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	376, 394
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	2 cut(s)	8, 325
CviJI	RGCY	7 cut(s)	47, 185, 233, 272, 276, 436, 445
CviKI_1	RGCY	7 cut(s)	47, 185, 233, 272, 276, 436, 445
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	2 cut(s)	302, 363
DpnII	GATC	2 cut(s)	300, 361
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	11, 325
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	166
FaiI	YATR	6 cut(s)	20, 201, 245, 279, 321, 463
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FauI	CCCGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	381, 383
FriOI	GRGCYC	1 cut(s)	438
GlaI	GCGC	2 cut(s)	7, 324
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	305, 398
HhaI	GCGC	2 cut(s)	8, 325
Hin6I	GCGC	2 cut(s)	6, 323
HinP1I	GCGC	2 cut(s)	6, 323
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	305, 398
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	439, 505
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	34, 115, 160
HpyCH4IV	ACGT	3 cut(s)	59, 105, 138
HpyCH4V	TGCA	3 cut(s)	134, 474, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 322, 442
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	3 cut(s)	59, 105, 138
HspAI	GCGC	2 cut(s)	6, 323
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	300, 361
LmnI	GCTCC	4 cut(s)	44, 153, 433, 452
MaeII	ACGT	3 cut(s)	59, 105, 138
MaeIII	GTNAC	2 cut(s)	28, 512
MalI	GATC	2 cut(s)	302, 363
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	2 cut(s)	300, 361
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	3 cut(s)	158, 438, 457
MluCI	AATT	3 cut(s)	124, 308, 447
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	187, 424
MseI	TTAA	2 cut(s)	162, 209
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	305, 398
MspR9I	CCNGG	4 cut(s)	13, 305, 327, 399
Mva1269I	GAATGC	2 cut(s)	251, 519
MvaI	CCWGG	2 cut(s)	13, 327
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	273, 322, 442
NciI	CCSGG	2 cut(s)	305, 399
NdeII	GATC	2 cut(s)	300, 361
NlaIV	GGNNCC	2 cut(s)	302, 352
NmuCI	GTSAC	1 cut(s)	28
PctI	GAATGC	2 cut(s)	251, 519
PflMI	CCANNNNNTGG	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	11, 325
PspGI	CCWGG	2 cut(s)	11, 325
PspN4I	GGNNCC	2 cut(s)	302, 352
PsuI	RGATCY	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	162, 209
Sau3AI	GATC	2 cut(s)	300, 361
ScrFI	CCNGG	4 cut(s)	13, 305, 327, 399
SduI	GDGCHC	3 cut(s)	158, 438, 457
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	217, 423
SmoI	CTYRAG	2 cut(s)	217, 423
Sse9I	AATT	3 cut(s)	124, 308, 447
SsiI	CCGC	2 cut(s)	367, 420
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	4 cut(s)	11, 303, 325, 397
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	34, 115, 160
TaiI	ACGT	3 cut(s)	62, 108, 141
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	124, 308, 447
Tru1I	TTAA	2 cut(s)	162, 209
Tru9I	TTAA	2 cut(s)	162, 209
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	7, 294
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.