Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005576

Physical Location & Seq

Genomic Coordinates Forward (+)

27651026 .. 27652395

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGCCTCCAGGTTCATAAAGTGCGTGACGGTCGGCGACGGCGCCGTCGGGAAAACCTGTATGCTGATTTCCTACACCAGCAACACCTTCCCTACCGACTATGTGCCGACTGTGTTCGACAATTTCAGCGCTAATGTTGTGGTGGATGGAAGCACAGTCAACCTTGCCCTGTGGGACACCGCAGGGCAGGAGGATTACAATAGATTACGACCCTTGAGCTATCGAGGTGCAGATGTTTTCATACTTGCTTTCTCTCTGATTAGCAAAGCCAGCTATGAAAATGTCGCCAAAAAGTGGATTCCTGAGCTGCGGCATTATGCACCTGGTGTTCCAATTATTCTTGTTGGAACCAAGCTTGATCTTCGTGATGATGAACAATTCTTTATGGACCATGCTGGTGCAGTGCCCATCTCCAGTGCTCAGGGAGAGGAGATGAAGAAACTGATTGGAGCTCCTTCGTATATTGAGTGTAGCTCGAAAACACAGCAGAATGTGAAGGCTGTCTTTGACGCAGCCATTAAGGTGGTGCTCCAGCCACCAAAGCAAAAGAAGAAAAAGAGAAGGGCACATAAGGCTTGCTCAATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

198

Amino Acids

21.69

Weight (kDa)

9.11

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.3e-49	Ras family
Roc	PF08477	8 - 121	4.8e-24	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17800 AT2G17800 AT3G51300 AT4G35950
fragaria_vesca	FvH4_1g11420 FvH4_2g38190
malus_domestica	MD02G1126300.v1.1 MD08G1010300.v1.1 MD15G1242500.v1.1
prunus_persica	Prupe.1G362900_v2.0.a1 Prupe.7G171700_v2.0.a1
pyrus_communis	pycom02g09860 pycom15g00860 pycom15g21370
rosa_chinensis	RchiOBHm_Chr2g0098991 RchiOBHm_Chr6g0303291
rosa_multiflora	Rmu_co8192584.1_g000001 Rmu_sc0000818.1_g000010 Rmu_sc0036924.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143520 Rroxscaffold_7G00164900
rosa_rugosa	Rorug02G0075500 Rorug06G0319900 Rorug06G0320000
rosa_samantha	Rh2DG129300 Rh6CG446500
rosa_wichuraiana	Rw2G009600 Rw6G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	297
AciI	CCGC	2 cut(s)	183, 313
AcyI	GRCGYC	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	297
AjnI	CCWGG	2 cut(s)	11, 325
AluBI	AGCT	6 cut(s)	222, 276, 310, 358, 455, 477
AluI	AGCT	6 cut(s)	222, 276, 310, 358, 455, 477
Alw21I	GWGCWC	3 cut(s)	424, 457, 534
Aor51HI	AGCGCT	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	310, 515
AspLEI	GCGC	3 cut(s)	8, 47, 134
AspS9I	GGNCC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	2 cut(s)	411, 571
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	457
Bbv12I	GWGCWC	3 cut(s)	424, 457, 534
BbvI	GCAGC	2 cut(s)	297, 527
BccI	CCATC	2 cut(s)	143, 419
BceAI	ACGGC	2 cut(s)	32, 58
BciT130I	CCWGG	2 cut(s)	13, 327
BfoI	RGCGCY	3 cut(s)	9, 48, 135
BisI	GCNGC	3 cut(s)	311, 314, 516
BlsI	GCNGC	3 cut(s)	312, 315, 517
Bme1390I	CCNGG	2 cut(s)	13, 327
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	46, 352
BmrFI	CCNGG	2 cut(s)	13, 327
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	2 cut(s)	400, 518
Bpu10I	CCTNAGC	2 cut(s)	306, 423
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	13, 327
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	297, 437
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	2 cut(s)	411, 571
BseXI	GCAGC	2 cut(s)	297, 527
BsgI	GTGCAG	2 cut(s)	252, 423
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	424, 457, 534
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	191
Bsp1286I	GDGCHC	5 cut(s)	411, 424, 457, 534, 571
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	2 cut(s)	183, 313
BspCNI	CTCAG	2 cut(s)	298, 436
BspLI	GGNNCC	2 cut(s)	46, 352
BspT107I	GGYRCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	417
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	13, 327
Bst4CI	ACNGT	3 cut(s)	34, 115, 160
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	274, 580
BstDEI	CTNAG	2 cut(s)	306, 423
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	3 cut(s)	9, 48, 135
BstHHI	GCGC	3 cut(s)	8, 47, 134
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 544, 575
BstNI	CCWGG	2 cut(s)	13, 327
BstSCI	CCNGG	2 cut(s)	11, 325
BstSLI	GKGCMC	2 cut(s)	411, 571
BstV1I	GCAGC	2 cut(s)	297, 527
BstXI	CCANNNNNNTGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 424
Cac8I	GCNNGC	2 cut(s)	274, 580
CfoI	GCGC	3 cut(s)	8, 47, 134
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	325
CviAII	CATG	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	306, 423
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	11, 325
EcoT38I	GRGCYC	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	398
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	311, 314, 516
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	311, 314, 516
GlaI	GCGC	3 cut(s)	7, 46, 133
GluI	GCNGC	3 cut(s)	311, 314, 516
GsuI	CTGGAG	2 cut(s)	400, 518
HaeII	RGCGCY	3 cut(s)	9, 48, 135
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	3 cut(s)	8, 47, 134
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	3 cut(s)	6, 45, 132
HinP1I	GCGC	3 cut(s)	6, 45, 132
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	3 cut(s)	52, 305, 368
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	44, 53
HpyAV	CCTTC	4 cut(s)	100, 468, 493, 558
HpyCH4III	ACNGT	3 cut(s)	34, 115, 160
HpyCH4V	TGCA	3 cut(s)	233, 323, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 544, 575
HpyF3I	CTNAG	2 cut(s)	306, 423
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	3 cut(s)	6, 45, 132
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	452, 460, 537
Lsp1109I	GCAGC	2 cut(s)	297, 527
MabI	ACCWGGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	356, 451, 565
MhlI	GDGCHC	5 cut(s)	411, 424, 457, 534, 571
MluCI	AATT	3 cut(s)	124, 336, 380
Mly113I	GGCGCC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	19, 187, 221, 424
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	2 cut(s)	399, 524
MspR9I	CCNGG	2 cut(s)	13, 327
MvaI	CCWGG	2 cut(s)	13, 327
MwoI	GCNNNNNNNGC	3 cut(s)	273, 544, 575
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	46, 352
NmuCI	GTSAC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	312, 315, 517
PluTI	GGCGCC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	11, 325
PspGI	CCWGG	2 cut(s)	11, 325
PspN4I	GGNNCC	2 cut(s)	46, 352
PspPI	GGNCC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	399, 524
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	311, 314, 516
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	13, 327
SduI	GDGCHC	5 cut(s)	411, 424, 457, 534, 571
SexAI	ACCWGGT	1 cut(s)	325
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	399, 524
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	124, 336, 380
SsiI	CCGC	2 cut(s)	183, 313
SspDI	GGCGCC	1 cut(s)	44
SspI	AATATT	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	11, 325
TaaI	ACNGT	3 cut(s)	34, 115, 160
TaqI	TCGA	3 cut(s)	120, 226, 479
TasI	AATT	3 cut(s)	124, 336, 380
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	411, 424
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	310, 515
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	7, 232, 294, 390, 452
TspRI	CASTG	2 cut(s)	411, 424
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.