AT2G17860

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009846
Physical Location & Seq
Reverse (-)
7761941 .. 7763018
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17860.1

Sequence Viewer

Length: 765 bp
ATGGATTTGGCTAAAGTCTCTTGCTTTCTCTTAGCGATTATGTTTTTCATCAATGGTGGTTCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCGGGACTTCTCTCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCCTCAACTCCTTTGAGTCACGACTCATCTCCATACCCGCCGCTTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAACCAAAACGAAATCACCGGAATATTCACTTGCGTCACCGGCGACTGCGGCTCATCCCAAATCGAATGCTCTGGCGCAGGAGCAATCCCTCCAGCTACACTAGCCGAATTCACACTCAACGGCGCCGAAAATCTAGATTTCTACGACGTTAGCCTCGTCGATGGTTACAACATCCCAATGACGATCGTTCCTTACGGCGGAGCTATCGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGCGGATCTCAACGGCTTATGTCCGGAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGGTGCTGTGGCGTGCAAGAGCGCTTGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGGCGCGTTTGGAACGCCGGACACGTGTCAGCCGAGTGAGTACTCTGTTTTCTTTAAGAAAACTTGTCCGACGGCTTATAGTTACGCTTATGACGACGGCACAAGCACTTTTACTTGCTCCGGTGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTCAAGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

254

Amino Acids

26.48

Weight (kDa)

4.26

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 249 3.4e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 125, 131, 359
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 2 cut(s) 476, 602
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 9 cut(s) 135, 198, 201, 214, 285, 435, 476, 479, 527
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 2 cut(s) 107, 211
AcsI RAATTY 1 cut(s) 344
AcvI CACGTG 1 cut(s) 621
AcyI GRCGYC 2 cut(s) 126, 360
AfaI GTAC 1 cut(s) 638
AfeI AGCGCT 1 cut(s) 559
AfiI CCNNNNNNNGG 4 cut(s) 152, 204, 220, 434
AflIII ACRYGT 2 cut(s) 618, 620
AgsI TTSAA 2 cut(s) 524, 756
AluBI AGCT 3 cut(s) 332, 440, 508
AluI AGCT 3 cut(s) 332, 440, 508
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 489
Aor13HI TCCGGA 1 cut(s) 499
Aor51HI AGCGCT 1 cut(s) 559
AoxI GGCC 2 cut(s) 107, 211
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 6 cut(s) 128, 314, 362, 476, 560, 602
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 67, 244, 265
AvaII GGWCC 1 cut(s) 207
BanI GGYRCC 3 cut(s) 125, 131, 359
BbrPI CACGTG 1 cut(s) 621
BbvI GCAGC 1 cut(s) 517
BccI CCATC 2 cut(s) 86, 392
BceAI ACGGC 6 cut(s) 373, 448, 505, 613, 684, 709
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 338, 371
BfoI RGCGCY 3 cut(s) 129, 363, 561
BisI GCNGC 6 cut(s) 201, 214, 286, 477, 506, 528
BlsI GCNGC 6 cut(s) 202, 215, 287, 478, 507, 529
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 4 cut(s) 61, 127, 133, 361
BmrFI CCNGG 1 cut(s) 111
BoxI GACNNNNGTC 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 621
BsaHI GRCGYC 2 cut(s) 126, 360
BsaWI WCCGGW 3 cut(s) 254, 499, 716
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 204, 220, 434
Bse118I RCCGGY 2 cut(s) 128, 275
Bse1I ACTGG 2 cut(s) 88, 157
BseAI TCCGGA 1 cut(s) 499
BseGI GGATG 2 cut(s) 290, 408
BseLI CCNNNNNNNGG 4 cut(s) 152, 204, 220, 434
BseNI ACTGG 2 cut(s) 88, 157
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 517
Bsh1236I CGCG 2 cut(s) 476, 602
Bsh1285I CGRYCG 2 cut(s) 214, 423
BshFI GGCC 2 cut(s) 109, 213
BshNI GGYRCC 3 cut(s) 125, 131, 359
BsiEI CGRYCG 2 cut(s) 214, 423
BslFI GGGAC 2 cut(s) 126, 237
BslI CCNNNNNNNGG 4 cut(s) 152, 204, 220, 434
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 2 cut(s) 126, 237
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 109, 213
Bsp13I TCCGGA 1 cut(s) 499
Bsp143I GATC 2 cut(s) 420, 481
BspACI CCGC 9 cut(s) 135, 198, 201, 214, 285, 435, 476, 479, 527
BspANI GGCC 2 cut(s) 109, 213
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 2 cut(s) 476, 602
BspLI GGNNCC 4 cut(s) 61, 127, 133, 361
BspPI GGATC 1 cut(s) 489
BspT107I GGYRCC 3 cut(s) 125, 131, 359
BsrBI CCGCTC 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 128, 275
BsrI ACTGG 2 cut(s) 88, 157
BssAI RCCGGY 2 cut(s) 128, 275
BssMI GATC 2 cut(s) 420, 481
BssNI GRCGYC 2 cut(s) 126, 360
Bst4CI ACNGT 2 cut(s) 103, 520
BstACI GRCGYC 2 cut(s) 126, 360
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 3 cut(s) 130, 230, 550
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 290, 408
BstFNI CGCG 2 cut(s) 476, 602
BstH2I RGCGCY 3 cut(s) 129, 363, 561
BstHHI GCGC 6 cut(s) 128, 314, 362, 476, 560, 602
BstKTI GATC 2 cut(s) 423, 484
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 420, 481
BstMCI CGRYCG 2 cut(s) 214, 423
BstMWI GCNNNNNNNGC 6 cut(s) 134, 234, 276, 285, 338, 566
BstPAI GACNNNNGTC 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 2 cut(s) 476, 602
BstV1I GCAGC 1 cut(s) 517
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 109, 213
BtsCI GGATG 2 cut(s) 290, 408
BtsIMutI CAGTG 2 cut(s) 95, 150
Cac8I GCNNGC 3 cut(s) 130, 230, 550
CfoI GCGC 6 cut(s) 128, 314, 362, 476, 560, 602
Cfr10I RCCGGY 2 cut(s) 128, 275
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 2 cut(s) 234, 259
Csp6I GTAC 1 cut(s) 637
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 31
DinI GGCGCC 2 cut(s) 127, 361
DpnI GATC 2 cut(s) 422, 483
DpnII GATC 2 cut(s) 420, 481
EaeI YGGCCR 2 cut(s) 107, 211
EagI CGGCCG 1 cut(s) 211
EciI GGCGGA 2 cut(s) 450, 494
EclXI CGGCCG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 559
Eco52I CGGCCG 1 cut(s) 211
Eco72I CACGTG 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 344
EgeI GGCGCC 2 cut(s) 127, 361
EheI GGCGCC 2 cut(s) 127, 361
FaiI YATR 7 cut(s) 41, 194, 218, 220, 496, 675, 687
FaqI GGGAC 2 cut(s) 126, 237
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 6 cut(s) 201, 214, 286, 477, 506, 528
FokI GGATG 2 cut(s) 277, 395
Fsp4HI GCNGC 6 cut(s) 201, 214, 286, 477, 506, 528
FspBI CTAG 2 cut(s) 338, 371
GlaI GCGC 6 cut(s) 127, 313, 361, 475, 559, 601
GluI GCNGC 6 cut(s) 201, 214, 286, 477, 506, 528
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 3 cut(s) 129, 363, 561
HaeIII GGCC 2 cut(s) 109, 213
HgaI GACGC 2 cut(s) 234, 259
HhaI GCGC 6 cut(s) 128, 314, 362, 476, 560, 602
Hin1I GRCGYC 2 cut(s) 126, 360
Hin6I GCGC 6 cut(s) 126, 312, 360, 474, 558, 600
HinP1I GCGC 6 cut(s) 126, 312, 360, 474, 558, 600
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 3 cut(s) 176, 183, 447
HpaI GTTAAC 1 cut(s) 85
HphI GGTGA 3 cut(s) 67, 244, 265
Hpy166II GTNNAC 2 cut(s) 75, 85
Hpy188I TCNGA 2 cut(s) 446, 666
Hpy188III TCNNGA 4 cut(s) 180, 371, 500, 756
Hpy8I GTNNAC 2 cut(s) 75, 85
Hpy99I CGWCG 4 cut(s) 386, 398, 670, 695
HpyAV CCTTC 2 cut(s) 756, 762
HpyCH4III ACNGT 2 cut(s) 103, 520
HpyCH4IV ACGT 4 cut(s) 71, 384, 620, 729
HpyCH4V TGCA 2 cut(s) 237, 552
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 234, 276, 285, 338, 566
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 4 cut(s) 71, 384, 620, 729
Hsp92I GRCGYC 2 cut(s) 126, 360
HspAI GCGC 6 cut(s) 126, 312, 360, 474, 558, 600
KasI GGCGCC 2 cut(s) 125, 359
Kpn2I TCCGGA 1 cut(s) 499
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 420, 481
LmnI GCTCC 5 cut(s) 142, 317, 437, 502, 719
Lsp1109I GCAGC 1 cut(s) 517
MaeI CTAG 2 cut(s) 338, 371
MaeII ACGT 4 cut(s) 71, 384, 620, 729
MaeIII GTNAC 8 cut(s) 92, 177, 271, 401, 458, 514, 593, 677
MalI GATC 2 cut(s) 422, 483
MbiI CCGCTC 1 cut(s) 137
MboI GATC 2 cut(s) 420, 481
MflI RGATCY 1 cut(s) 481
MluCI AATT 1 cut(s) 344
Mly113I GGCGCC 2 cut(s) 126, 360
MlyI GAGTC 3 cut(s) 177, 185, 456
MmeI TCCRAC 1 cut(s) 689
MnlI CCTC 5 cut(s) 73, 173, 336, 401, 559
MroI TCCGGA 1 cut(s) 499
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 84, 651
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 308
MvnI CGCG 2 cut(s) 476, 602
MwoI GCNNNNNNNGC 6 cut(s) 134, 234, 276, 285, 338, 566
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 2 cut(s) 126, 360
NciI CCSGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 218
NdeII GATC 2 cut(s) 420, 481
NgoMIV GCCGGC 1 cut(s) 128
NlaIV GGNNCC 4 cut(s) 61, 127, 133, 361
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 177, 271
PcsI WCGNNNNNNNCGW 4 cut(s) 390, 617, 626, 687
PctI GAATGC 1 cut(s) 308
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 6 cut(s) 202, 215, 287, 478, 507, 529
Ple19I CGATCG 1 cut(s) 423
PleI GAGTC 3 cut(s) 177, 184, 455
PluTI GGCGCC 2 cut(s) 129, 363
PmaCI CACGTG 1 cut(s) 621
PmlI CACGTG 1 cut(s) 621
PpsI GAGTC 3 cut(s) 177, 184, 455
Ppu21I YACGTR 1 cut(s) 621
PshAI GACNNNNGTC 1 cut(s) 621
PspCI CACGTG 1 cut(s) 621
PspN4I GGNNCC 4 cut(s) 61, 127, 133, 361
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 481
PvuI CGATCG 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 84, 651
SatI GCNGC 6 cut(s) 201, 214, 286, 477, 506, 528
Sau3AI GATC 2 cut(s) 420, 481
Sau96I GGNCC 1 cut(s) 207
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 3 cut(s) 177, 185, 456
ScrFI CCNGG 1 cut(s) 111
SetI ASST 7 cut(s) 74, 334, 387, 442, 510, 623, 732
SfoI GGCGCC 2 cut(s) 127, 361
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 1 cut(s) 344
SsiI CCGC 9 cut(s) 135, 198, 201, 214, 285, 435, 476, 479, 527
SspDI GGCGCC 2 cut(s) 125, 359
SspI AATATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 338, 371
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 103, 520
TaiI ACGT 4 cut(s) 74, 387, 623, 732
TaqI TCGA 2 cut(s) 300, 396
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 636
TauI GCSGC 5 cut(s) 203, 216, 288, 479, 530
Tru1I TTAA 2 cut(s) 84, 651
Tru9I TTAA 2 cut(s) 84, 651
TscAI CASTG 2 cut(s) 95, 157
TseFI GTSAC 2 cut(s) 177, 271
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 2 cut(s) 177, 271
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 2 cut(s) 95, 157
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 370
XspI CTAG 2 cut(s) 338, 371
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.