pycom02g10230

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009846
Physical Location & Seq
Reverse (-)
7067784 .. 7069531
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10230.1

Sequence Viewer

Length: 900 bp
ATGGCTTCCCATCAAGTTTTTTCATCCTTCCTCTTCCTTCTCTGTCTCCTTCAATCCATTAGAGTCGGCTACCCGGCGACGTTCACCATCGCAAACAAGTGCACCACCACCATATGGCCGGCCATTCTGTCTAATGCCGGGACCGACCAGCGACCGGCCACCACTGGATTCGCTTTGCCTCCTGGAGAGTCCAACACGTTTTCCGTCCCCACCTCGTGGTCTGGTAGGTTATGGGGGCGAACGCTCTGCTCCCAGGACTCAACCACAGGCAACTTCTCTTGCTTGACAGGCGACTGCGGGTCTTCTGCAGTTGAATGTGCTGGCCGTGGAGCCGCGCCGCCGGCTACTTTCGCAGAGTTCACGCTGAACGGTACGGGCGGGCTTGATTTCTACGACGTGAGCTTGGTCGATGGGTATAACCTTCCCATCTTGGTGGTGGCCGAGGGCGGGACCGGAGGGAACTGCACGACCACCGGGTGCGTTGTGGACTTGAACAACGGGTGCCCCTCGGAGCTGAAGGTGACGGCTAGTGGCGAGGGAGTGGCGTGTAAAAGCGCATGCGAGACGTTTGGGGAGCCCCAGTACTGCTGTAGCGGGCCCTACGCTACGCCGGACGCATGCATGCCGAGTTCTTATTCGCAATTTTTTAAAACTGCGTGCCCGAAGGCTTACAGTTATGCGTATGACGACGGCACCAGCACCATCACCTGTGCTTCCGCCAATTACATCATCACCTTCTGCCCTGCTCCTTCGATCAGCGTGAAGTCATCGAATGGGACGGTCCCTGGTGCAGTCGGTGTCTCAGCTAGTTTACGTTCTACAACGCCCAACATCGTCGTTTTCGCCGTCACTATTATGGCGGCGGCTTGGCTGGGCTGCCGCTATTTTGAATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

300

Amino Acids

30.99

Weight (kDa)

4.71

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 248 1.1e-81 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 501, 692
AccB7I CCANNNNNTGG 2 cut(s) 114, 216
AccII CGCG 1 cut(s) 335
AcoI YGGCCR 5 cut(s) 116, 120, 156, 322, 438
AcuI CTGAAG 1 cut(s) 536
AdeI CACNNNGTG 2 cut(s) 216, 477
AfaI GTAC 2 cut(s) 373, 584
AfiI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 447
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 4 cut(s) 53, 314, 493, 890
AhdI GACNNNNNGTC 1 cut(s) 298
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 3 cut(s) 181, 252, 784
AluBI AGCT 3 cut(s) 402, 514, 806
AluI AGCT 3 cut(s) 402, 514, 806
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 3 cut(s) 50, 557, 805
Alw44I GTGCAC 1 cut(s) 100
AoxI GGCC 6 cut(s) 116, 120, 156, 322, 438, 596
ApaI GGGCCC 1 cut(s) 600
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 876
AspLEI GCGC 2 cut(s) 337, 557
AspS9I GGNCC 5 cut(s) 141, 450, 596, 597, 781
AsuC2I CCSGG 3 cut(s) 74, 139, 475
AsuHPI GGTGA 4 cut(s) 76, 532, 697, 724
AvaII GGWCC 3 cut(s) 141, 450, 781
BaeGI GKGCMC 4 cut(s) 104, 506, 600, 662
BanI GGYRCC 2 cut(s) 501, 692
BanII GRGCYC 2 cut(s) 579, 600
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 863
BccI CCATC 5 cut(s) 18, 95, 404, 434, 710
BceAI ACGGC 4 cut(s) 309, 540, 706, 830
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 183, 254, 786
BcnI CCSGG 3 cut(s) 74, 139, 475
BcoDI GTCTC 3 cut(s) 50, 557, 805
BfaI CTAG 2 cut(s) 528, 807
BfmI CTRYAG 2 cut(s) 306, 589
BisI GCNGC 6 cut(s) 333, 338, 861, 864, 877, 880
BlsI GCNGC 6 cut(s) 334, 339, 862, 865, 878, 881
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 6 cut(s) 74, 139, 183, 254, 475, 786
Bme18I GGWCC 3 cut(s) 141, 450, 781
BmeRI GACNNNNNGTC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 5 cut(s) 141, 450, 596, 597, 781
BmiI GGNNCC 8 cut(s) 142, 331, 451, 503, 576, 598, 694, 783
BmrFI CCNGG 6 cut(s) 74, 139, 183, 254, 475, 786
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 204
BpuMI CCSGG 3 cut(s) 74, 139, 475
BsaJI CCNNGG 5 cut(s) 252, 325, 441, 507, 784
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 154, 216, 447
Bse118I RCCGGY 3 cut(s) 118, 154, 340
Bse1I ACTGG 2 cut(s) 169, 580
BseBI CCWGG 3 cut(s) 183, 254, 786
BseDI CCNNGG 5 cut(s) 252, 325, 441, 507, 784
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 447
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 2 cut(s) 169, 580
BseSI GKGCMC 4 cut(s) 104, 506, 600, 662
BseXI GCAGC 1 cut(s) 863
BseYI CCCAGC 1 cut(s) 871
BsgI GTGCAG 2 cut(s) 448, 810
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 6 cut(s) 118, 122, 158, 324, 440, 598
BshNI GGYRCC 2 cut(s) 501, 692
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 8 cut(s) 74, 119, 138, 155, 341, 453, 474, 611
BslFI GGGAC 5 cut(s) 154, 191, 463, 767, 790
BslI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 447
BsmAI GTCTC 3 cut(s) 50, 557, 805
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 5 cut(s) 154, 191, 463, 767, 790
BsnI GGCC 6 cut(s) 118, 122, 158, 324, 440, 598
Bsp120I GGGCCC 1 cut(s) 596
Bsp1286I GDGCHC 5 cut(s) 104, 506, 579, 600, 662
Bsp143I GATC 1 cut(s) 753
BspANI GGCC 6 cut(s) 118, 122, 158, 324, 440, 598
BspCNI CTCAG 1 cut(s) 815
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 8 cut(s) 142, 331, 451, 503, 576, 598, 694, 783
BspMAI CTGCAG 1 cut(s) 310
BspT107I GGYRCC 2 cut(s) 501, 692
BsrFI RCCGGY 3 cut(s) 118, 154, 340
BsrI ACTGG 2 cut(s) 169, 580
BssAI RCCGGY 3 cut(s) 118, 154, 340
BssECI CCNNGG 5 cut(s) 252, 325, 441, 507, 784
BssMI GATC 1 cut(s) 753
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 183, 254, 786
Bst4CI ACNGT 3 cut(s) 371, 674, 781
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 9 cut(s) 120, 322, 342, 380, 559, 596, 619, 623, 658
BstDEI CTNAG 1 cut(s) 802
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 2 cut(s) 337, 557
BstKTI GATC 1 cut(s) 756
BstMAI GTCTC 3 cut(s) 50, 557, 805
BstMBI GATC 1 cut(s) 753
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 3 cut(s) 288, 341, 350
BstNI CCWGG 3 cut(s) 183, 254, 786
BstNSI RCATGY 3 cut(s) 561, 621, 625
BstSCI CCNGG 6 cut(s) 72, 137, 181, 252, 473, 784
BstSFI CTRYAG 2 cut(s) 306, 589
BstSLI GKGCMC 4 cut(s) 104, 506, 600, 662
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 863
BstV2I GAAGAC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 433
BsuRI GGCC 6 cut(s) 118, 122, 158, 324, 440, 598
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 9 cut(s) 120, 322, 342, 380, 559, 596, 619, 623, 658
CfoI GCGC 2 cut(s) 337, 557
Cfr10I RCCGGY 3 cut(s) 118, 154, 340
Cfr13I GGNCC 5 cut(s) 141, 450, 596, 597, 781
CseI GACGC 1 cut(s) 623
Csp6I GTAC 2 cut(s) 372, 583
CviAII CATG 3 cut(s) 558, 618, 622
CviQI GTAC 2 cut(s) 372, 583
DdeI CTNAG 1 cut(s) 802
DpnI GATC 1 cut(s) 755
DpnII GATC 1 cut(s) 753
DraI TTTAAA 1 cut(s) 649
DraIII CACNNNGTG 2 cut(s) 216, 477
DriI GACNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 5 cut(s) 116, 120, 156, 322, 438
Eam1104I CTCTTC 1 cut(s) 38
Eam1105I GACNNNNNGTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 706
Eco24I GRGCYC 2 cut(s) 579, 600
Eco47I GGWCC 3 cut(s) 141, 450, 781
Eco57I CTGAAG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 597
EcoRII CCWGG 3 cut(s) 181, 252, 784
EcoT22I ATGCAT 1 cut(s) 623
EcoT38I GRGCYC 2 cut(s) 579, 600
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 3 cut(s) 561, 621, 625
FaqI GGGAC 5 cut(s) 154, 191, 463, 767, 790
FatI CATG 3 cut(s) 557, 617, 621
FauI CCCGC 4 cut(s) 290, 371, 440, 587
FauNDI CATATG 1 cut(s) 113
Fnu4HI GCNGC 6 cut(s) 333, 338, 861, 864, 877, 880
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 2 cut(s) 579, 600
FseI GGCCGGCC 1 cut(s) 122
Fsp4HI GCNGC 6 cut(s) 333, 338, 861, 864, 877, 880
FspBI CTAG 2 cut(s) 528, 807
GlaI GCGC 2 cut(s) 336, 556
GluI GCNGC 6 cut(s) 333, 338, 861, 864, 877, 880
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 6 cut(s) 118, 122, 158, 324, 440, 598
HapII CCGG 8 cut(s) 74, 119, 138, 155, 341, 453, 474, 611
HgaI GACGC 1 cut(s) 623
HhaI GCGC 2 cut(s) 337, 557
Hin1II CATG 3 cut(s) 561, 621, 625
Hin6I GCGC 2 cut(s) 335, 555
HinP1I GCGC 2 cut(s) 335, 555
HinfI GANTC 5 cut(s) 63, 168, 188, 257, 890
HpaII CCGG 8 cut(s) 74, 119, 138, 155, 341, 453, 474, 611
HphI GGTGA 4 cut(s) 76, 532, 697, 724
Hpy166II GTNNAC 5 cut(s) 84, 102, 360, 487, 812
Hpy188I TCNGA 1 cut(s) 511
Hpy8I GTNNAC 5 cut(s) 84, 102, 360, 487, 812
Hpy99I CGWCG 4 cut(s) 82, 398, 692, 839
HpyAV CCTTC 8 cut(s) 37, 47, 59, 431, 511, 658, 745, 759
HpyCH4III ACNGT 3 cut(s) 371, 674, 781
HpyCH4IV ACGT 5 cut(s) 80, 197, 396, 566, 814
HpyCH4V TGCA 5 cut(s) 102, 308, 465, 621, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 341, 350
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 5 cut(s) 80, 197, 396, 566, 814
Hsp92II CATG 3 cut(s) 561, 621, 625
HspAI GCGC 2 cut(s) 335, 555
KroI GCCGGC 2 cut(s) 118, 340
KroNI GCCGGC 2 cut(s) 120, 342
Kzo9I GATC 1 cut(s) 753
LmnI GCTCC 5 cut(s) 254, 329, 511, 574, 751
Lsp1109I GCAGC 1 cut(s) 863
MaeI CTAG 2 cut(s) 528, 807
MaeII ACGT 5 cut(s) 80, 197, 396, 566, 814
MaeIII GTNAC 2 cut(s) 520, 847
MalI GATC 1 cut(s) 755
MboI GATC 1 cut(s) 753
MboII GAAGA 2 cut(s) 25, 294
MhlI GDGCHC 5 cut(s) 104, 506, 579, 600, 662
MluCI AATT 2 cut(s) 641, 721
MlyI GAGTC 3 cut(s) 72, 197, 251
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 41, 189, 223, 436, 449, 517, 529
Mph1103I ATGCAT 1 cut(s) 623
MroNI GCCGGC 2 cut(s) 118, 340
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 431, 854
MspI CCGG 8 cut(s) 74, 119, 138, 155, 341, 453, 474, 611
MspR9I CCNGG 6 cut(s) 74, 139, 183, 254, 475, 786
MvaI CCWGG 3 cut(s) 183, 254, 786
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 288, 341, 350
NaeI GCCGGC 2 cut(s) 120, 342
NciI CCSGG 3 cut(s) 74, 139, 475
NdeI CATATG 1 cut(s) 113
NdeII GATC 1 cut(s) 753
NgoMIV GCCGGC 2 cut(s) 118, 340
NlaIII CATG 3 cut(s) 561, 621, 625
NlaIV GGNNCC 8 cut(s) 142, 331, 451, 503, 576, 598, 694, 783
NmeAIII GCCGAG 2 cut(s) 466, 651
NmuCI GTSAC 2 cut(s) 520, 847
NsiI ATGCAT 1 cut(s) 623
NspI RCATGY 3 cut(s) 561, 621, 625
PaeI GCATGC 3 cut(s) 561, 621, 625
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PdiI GCCGGC 2 cut(s) 120, 342
PfeI GAWTC 2 cut(s) 168, 890
PflMI CCANNNNNTGG 2 cut(s) 114, 216
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 6 cut(s) 334, 339, 862, 865, 878, 881
PleI GAGTC 3 cut(s) 71, 196, 251
PpsI GAGTC 3 cut(s) 71, 196, 251
Psp6I CCWGG 3 cut(s) 181, 252, 784
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 3 cut(s) 181, 252, 784
PspN4I GGNNCC 8 cut(s) 142, 331, 451, 503, 576, 598, 694, 783
PspOMI GGGCCC 1 cut(s) 596
PspPI GGNCC 5 cut(s) 141, 450, 596, 597, 781
PstI CTGCAG 1 cut(s) 310
RigI GGCCGGCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 373, 584
RsaNI GTAC 2 cut(s) 372, 583
RseI CAYNNNNRTG 2 cut(s) 431, 854
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 6 cut(s) 333, 338, 861, 864, 877, 880
Sau3AI GATC 1 cut(s) 753
Sau96I GGNCC 5 cut(s) 141, 450, 596, 597, 781
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 3 cut(s) 72, 197, 251
ScrFI CCNGG 6 cut(s) 74, 139, 183, 254, 475, 786
SduI GDGCHC 5 cut(s) 104, 506, 579, 600, 662
SfcI CTRYAG 2 cut(s) 306, 589
SinI GGWCC 3 cut(s) 141, 450, 781
SmiMI CAYNNNNRTG 2 cut(s) 431, 854
SphI GCATGC 3 cut(s) 561, 621, 625
Sse9I AATT 2 cut(s) 641, 721
SspMI CTAG 2 cut(s) 528, 807
StyD4I CCNGG 6 cut(s) 72, 137, 181, 252, 473, 784
TaaI ACNGT 3 cut(s) 371, 674, 781
TaiI ACGT 5 cut(s) 83, 200, 399, 569, 817
TaqI TCGA 3 cut(s) 408, 752, 770
TaqII GACCGA 1 cut(s) 158
TasI AATT 2 cut(s) 641, 721
TatI WGTACW 1 cut(s) 582
TauI GCSGC 5 cut(s) 335, 340, 863, 866, 882
TfiI GAWTC 2 cut(s) 168, 890
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 520, 847
TseI GCWGC 1 cut(s) 876
Tsp45I GTSAC 2 cut(s) 520, 847
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 169
Van91I CCANNNNNTGG 2 cut(s) 114, 216
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 3 cut(s) 141, 450, 781
XceI RCATGY 3 cut(s) 561, 621, 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 2 cut(s) 528, 807
ZrmI AGTACT 1 cut(s) 584
Zsp2I ATGCAT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.