Prupe.7G169400_v2.0.a1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009846
Physical Location & Seq
Forward (+)
17196734 .. 17198952
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G169400.1

Sequence Viewer

Length: 888 bp
ATGGCTTCTCATAAGTTTTTTTCAACCTTTCTATTCTCTCTCTGTGTTCTTCAATCCATTTCAGGTGGGAATTCAGCGACGTTCACAATTACAAACAAGTGCAGCAACACAATTTGGCCGGGCATTCTATCAAATGCCGGGACGGATCAGCTTCCAACCACCGGCTTCGCTCTCAACTCCGGGGATTCCAACACGTTCTCCGTCCCCACCTCCTGGTCCGGTCGGTTATGGGGGCGGACTCTATGCTCCCAAGACCCGACCACGGGCAAGTTCACTTGCCTAACCGGCGACTGTGGATCATCCGCGGTCGAATGCTCCGGTGGTGGAGCTGCCCCCCCAGCGACTCTAGCAGAATTCACGCTGAACGGGGCTGGCGGGCTAGACTTCTATGACGTCAGCTTCGTCGATGGTTATAACCTCCCCATGACAGTGGTGCCTGAGGGTGGGACCGGAGGGAACTGCACGACTACCGGGTGCGAGGTGGACTTGAACGCCGGGTGCCCGTCGGAGCTCAAGGTGACGGCAAGTGACGAGGGCGTGGCGTGTAAAAGCGCGTGTGAGGCTTTTGGGGACCCACAGTACTGTTGTAGTGGGGCCTACGCGACTCCAGACACATGTAAACCCAGTTCTTATTCGCAGTTTTTTAAGAATGCGTGCCCGAAAGCTTACAGCTATGCTTATGATGACGGCACCAGCACCTTCACTTGCGCCTCCGCCAATTATCTCATCACTTTCTGCCCTTCCCCTTCCACCAGTTTGAAGTCGTCAAATGGGCAATACCCAGAGGCGGTCGGTGTCTCAGCAAGTTCACGTAATACGACACCGAGCTTCGTCGTTTTTGGCGTCATTGTTTTGGCGGCAGCTTGGCGGTTGCGGCAGCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

296

Amino Acids

30.63

Weight (kDa)

4.62

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 3 cut(s) 433, 498, 689
AccB7I CCANNNNNTGG 1 cut(s) 213
AccII CGCG 3 cut(s) 305, 554, 602
AciI CCGC 9 cut(s) 235, 303, 305, 375, 714, 788, 857, 868, 874
AclWI GGATC 2 cut(s) 153, 304
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 2 cut(s) 70, 353
AcyI GRCGYC 2 cut(s) 393, 843
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 6 cut(s) 161, 213, 262, 263, 443, 787
AflIII ACRYGT 2 cut(s) 192, 614
AgsI TTSAA 4 cut(s) 24, 53, 490, 760
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 9 cut(s) 151, 329, 399, 511, 665, 672, 828, 863, 880
AluI AGCT 9 cut(s) 151, 329, 399, 511, 665, 672, 828, 863, 880
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 2 cut(s) 153, 304
AoxI GGCC 2 cut(s) 116, 594
ApeKI GCWGC 4 cut(s) 102, 329, 860, 877
ApoI RAATTY 2 cut(s) 70, 353
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 2 cut(s) 554, 710
AspS9I GGNCC 4 cut(s) 216, 447, 571, 594
AsuC2I CCSGG 5 cut(s) 120, 139, 181, 472, 496
AsuHPI GGTGA 1 cut(s) 529
AvaII GGWCC 3 cut(s) 216, 447, 571
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 2 cut(s) 503, 659
BanI GGYRCC 3 cut(s) 433, 498, 689
BanII GRGCYC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 114, 316, 872
BccI CCATC 1 cut(s) 401
BceAI ACGGC 2 cut(s) 537, 703
BciT130I CCWGG 1 cut(s) 214
BcnI CCSGG 5 cut(s) 120, 139, 181, 472, 496
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 2 cut(s) 347, 380
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 6 cut(s) 103, 330, 858, 861, 875, 878
BlsI GCNGC 6 cut(s) 104, 331, 859, 862, 876, 879
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 6 cut(s) 120, 139, 181, 214, 472, 496
Bme18I GGWCC 3 cut(s) 216, 447, 571
BmgT120I GGNCC 4 cut(s) 216, 447, 571, 594
BmiI GGNNCC 7 cut(s) 435, 448, 500, 572, 573, 595, 691
BmrFI CCNGG 6 cut(s) 120, 139, 181, 214, 472, 496
BmrI ACTGGG 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 5 cut(s) 120, 139, 181, 472, 496
BsaAI YACGTR 1 cut(s) 812
BsaHI GRCGYC 2 cut(s) 393, 843
BsaJI CCNNGG 3 cut(s) 180, 261, 303
BsaWI WCCGGW 3 cut(s) 218, 317, 449
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 213, 262, 263, 443, 787
Bse118I RCCGGY 2 cut(s) 161, 284
Bse1I ACTGG 2 cut(s) 624, 753
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 3 cut(s) 180, 261, 303
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 6 cut(s) 161, 213, 262, 263, 443, 787
BseMII CTCAG 2 cut(s) 429, 813
BseNI ACTGG 2 cut(s) 624, 753
BseSI GKGCMC 2 cut(s) 503, 659
BseXI GCAGC 3 cut(s) 114, 316, 872
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 2 cut(s) 121, 445
Bsh1236I CGCG 3 cut(s) 305, 554, 602
Bsh1285I CGRYCG 3 cut(s) 223, 309, 792
BshFI GGCC 2 cut(s) 118, 596
BshNI GGYRCC 3 cut(s) 433, 498, 689
BsiEI CGRYCG 3 cut(s) 223, 309, 792
BsiHKAI GWGCWC 1 cut(s) 513
BslFI GGGAC 4 cut(s) 154, 188, 460, 584
BslI CCNNNNNNNGG 6 cut(s) 161, 213, 262, 263, 443, 787
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 4 cut(s) 154, 188, 460, 584
BsmI GAATGC 3 cut(s) 123, 317, 655
BsnI GGCC 2 cut(s) 118, 596
Bsp1286I GDGCHC 3 cut(s) 503, 513, 659
Bsp143I GATC 2 cut(s) 145, 296
BspACI CCGC 9 cut(s) 235, 303, 305, 375, 714, 788, 857, 868, 874
BspANI GGCC 2 cut(s) 118, 596
BspCNI CTCAG 2 cut(s) 430, 812
BspFNI CGCG 3 cut(s) 305, 554, 602
BspLI GGNNCC 7 cut(s) 435, 448, 500, 572, 573, 595, 691
BspPI GGATC 2 cut(s) 153, 304
BspT107I GGYRCC 3 cut(s) 433, 498, 689
BsrFI RCCGGY 2 cut(s) 161, 284
BsrI ACTGG 2 cut(s) 624, 753
BssAI RCCGGY 2 cut(s) 161, 284
BssECI CCNNGG 3 cut(s) 180, 261, 303
BssMI GATC 2 cut(s) 145, 296
BssNI GRCGYC 2 cut(s) 393, 843
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 4 cut(s) 293, 430, 579, 584
BstACI GRCGYC 2 cut(s) 393, 843
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 373, 377, 655
BstDEI CTNAG 2 cut(s) 438, 799
BstDSI CCRYGG 2 cut(s) 261, 303
BstF5I GGATG 1 cut(s) 299
BstFNI CGCG 3 cut(s) 305, 554, 602
BstHHI GCGC 2 cut(s) 554, 710
BstKTI GATC 2 cut(s) 148, 299
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 2 cut(s) 145, 296
BstMCI CGRYCG 3 cut(s) 223, 309, 792
BstMWI GCNNNNNNNGC 5 cut(s) 285, 338, 347, 560, 874
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 6 cut(s) 118, 137, 179, 212, 470, 494
BstSLI GKGCMC 2 cut(s) 503, 659
BstUI CGCG 3 cut(s) 305, 554, 602
BstV1I GCAGC 3 cut(s) 114, 316, 872
BstXI CCANNNNNNTGG 1 cut(s) 430
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 2 cut(s) 118, 596
BtgI CCRYGG 2 cut(s) 261, 303
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 3 cut(s) 373, 377, 655
CfoI GCGC 2 cut(s) 554, 710
Cfr10I RCCGGY 2 cut(s) 161, 284
Cfr13I GGNCC 4 cut(s) 216, 447, 571, 594
Cfr42I CCGCGG 1 cut(s) 306
CseI GACGC 1 cut(s) 832
Csp6I GTAC 1 cut(s) 580
CviAII CATG 2 cut(s) 424, 615
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 438, 799
DpnI GATC 2 cut(s) 147, 298
DpnII GATC 2 cut(s) 145, 296
EaeI YGGCCR 1 cut(s) 116
EciI GGCGGA 2 cut(s) 250, 703
Ecl136II GAGCTC 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 216, 447, 571
Eco53kI GAGCTC 1 cut(s) 511
Eco81I CCTNAGG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 571, 594
EcoRI GAATTC 2 cut(s) 70, 353
EcoRII CCWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 513
FaeI CATG 2 cut(s) 427, 618
FaiI YATR 9 cut(s) 12, 229, 244, 390, 414, 425, 616, 675, 681
FaqI GGGAC 4 cut(s) 154, 188, 460, 584
FatI CATG 2 cut(s) 423, 614
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 6 cut(s) 103, 330, 858, 861, 875, 878
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 6 cut(s) 103, 330, 858, 861, 875, 878
FspBI CTAG 2 cut(s) 347, 380
GlaI GCGC 2 cut(s) 553, 709
GluI GCNGC 6 cut(s) 103, 330, 858, 861, 875, 878
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 2 cut(s) 118, 596
HgaI GACGC 1 cut(s) 832
HhaI GCGC 2 cut(s) 554, 710
Hin1I GRCGYC 2 cut(s) 393, 843
Hin1II CATG 2 cut(s) 427, 618
Hin6I GCGC 2 cut(s) 552, 708
HinP1I GCGC 2 cut(s) 552, 708
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 185, 238, 343, 604
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 5 cut(s) 84, 273, 484, 620, 809
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 1 cut(s) 608
Hpy8I GTNNAC 5 cut(s) 84, 273, 484, 620, 809
Hpy99I CGWCG 4 cut(s) 82, 407, 508, 836
HpyAV CCTTC 3 cut(s) 709, 750, 756
HpyCH4III ACNGT 4 cut(s) 293, 430, 579, 584
HpyCH4IV ACGT 4 cut(s) 80, 194, 393, 811
HpyCH4V TGCA 2 cut(s) 102, 462
HpyF10VI GCNNNNNNNGC 5 cut(s) 285, 338, 347, 560, 874
HpyF3I CTNAG 2 cut(s) 438, 799
HpySE526I ACGT 4 cut(s) 80, 194, 393, 811
Hsp92I GRCGYC 2 cut(s) 393, 843
Hsp92II CATG 2 cut(s) 427, 618
HspAI GCGC 2 cut(s) 552, 708
KflI GGGWCCC 1 cut(s) 571
KspI CCGCGG 1 cut(s) 306
Kzo9I GATC 2 cut(s) 145, 296
LmnI GCTCC 4 cut(s) 251, 320, 326, 508
Lsp1109I GCAGC 3 cut(s) 114, 316, 872
MaeI CTAG 2 cut(s) 347, 380
MaeII ACGT 4 cut(s) 80, 194, 393, 811
MaeIII GTNAC 2 cut(s) 517, 527
MalI GATC 2 cut(s) 147, 298
MboI GATC 2 cut(s) 145, 296
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 3 cut(s) 503, 513, 659
MluCI AATT 5 cut(s) 70, 87, 111, 353, 718
MlyI GAGTC 3 cut(s) 232, 337, 598
MmeI TCCRAC 3 cut(s) 179, 213, 486
MnlI CCTC 9 cut(s) 220, 428, 433, 446, 472, 526, 553, 721, 778
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 305
MspR9I CCNGG 6 cut(s) 120, 139, 181, 214, 472, 496
Mva1269I GAATGC 3 cut(s) 123, 317, 655
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 3 cut(s) 305, 554, 602
MwoI GCNNNNNNNGC 5 cut(s) 285, 338, 347, 560, 874
NciI CCSGG 5 cut(s) 120, 139, 181, 472, 496
NdeII GATC 2 cut(s) 145, 296
NlaIII CATG 2 cut(s) 427, 618
NlaIV GGNNCC 7 cut(s) 435, 448, 500, 572, 573, 595, 691
NmuCI GTSAC 2 cut(s) 517, 527
NspI RCATGY 1 cut(s) 618
PciI ACATGT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 840
PctI GAATGC 3 cut(s) 123, 317, 655
PfeI GAWTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 6 cut(s) 104, 331, 859, 862, 876, 879
PleI GAGTC 3 cut(s) 232, 337, 598
PpsI GAGTC 3 cut(s) 232, 337, 598
Ppu21I YACGTR 1 cut(s) 812
PpuMI RGGWCCY 1 cut(s) 571
PscI ACATGT 1 cut(s) 614
PsiI TTATAA 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 7 cut(s) 435, 448, 500, 572, 573, 595, 691
PspPI GGNCC 4 cut(s) 216, 447, 571, 594
PspPPI RGGWCCY 1 cut(s) 571
PsrI GAACNNNNNNTAC 2 cut(s) 610, 642
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 513
SacII CCGCGG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 6 cut(s) 103, 330, 858, 861, 875, 878
Sau3AI GATC 2 cut(s) 145, 296
Sau96I GGNCC 4 cut(s) 216, 447, 571, 594
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 3 cut(s) 232, 337, 598
ScrFI CCNGG 6 cut(s) 120, 139, 181, 214, 472, 496
SduI GDGCHC 3 cut(s) 503, 513, 659
Sfr303I CCGCGG 1 cut(s) 306
SgrBI CCGCGG 1 cut(s) 306
SinI GGWCC 3 cut(s) 216, 447, 571
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 70, 87, 111, 353, 718
SsiI CCGC 9 cut(s) 235, 303, 305, 375, 714, 788, 857, 868, 874
SspMI CTAG 2 cut(s) 347, 380
SstI GAGCTC 1 cut(s) 513
StyD4I CCNGG 6 cut(s) 118, 137, 179, 212, 470, 494
TaaI ACNGT 4 cut(s) 293, 430, 579, 584
TaiI ACGT 4 cut(s) 83, 197, 396, 814
TaqI TCGA 2 cut(s) 309, 405
TasI AATT 5 cut(s) 70, 87, 111, 353, 718
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 860, 877
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 517, 527
TseI GCWGC 4 cut(s) 102, 329, 860, 877
Tsp45I GTSAC 2 cut(s) 517, 527
TspGWI ACGGA 2 cut(s) 158, 190
TspRI CASTG 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 213
VpaK11BI GGWCC 3 cut(s) 216, 447, 571
XapI RAATTY 2 cut(s) 70, 353
XceI RCATGY 1 cut(s) 618
XspI CTAG 2 cut(s) 347, 380
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.