pycom02g10210

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009846
Physical Location & Seq
Reverse (-)
7056415 .. 7058410
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10210.1

Sequence Viewer

Length: 1065 bp
ATGAGAAATAGACACAAAAACCCGTCACATGATCTCTGCCATGGTGACTCGTGTGCCCCCCACCCCATATTCTCCCACACGACTCCCAACTCTCTCCCCTTCCCTATAAAAACCCCATCTCTCCCACACGACCTACTGAAACAAAAAAGCACAGAAAAAAGAGACATTTCACTTCCAATGGCTTCCCATCAAGTTTTTTCATCGTTCCTATTCCTTCTCTGTCTCCTTCAATCCATTAGAGTCGGCTACTCGGCGACGTTCACCATCGCAAACAAGTGCACCACCACCATATGGCCGGGCATTCTGTCGAATGCCGGGACTGACCAGCTACCCACCACTGGATTCGCTTTGGGTCCTGGAGAGTCCAACACGTTTTCCGTCCCTACATCGTGGTCCGGTAGGTTATGGGGGCGGACGCTCTGCTCCCAGGACTCAACCACAGGCAAGTTCTCTTGCTTGACAGGCGACTGCGGATCTTCTGCAGTCGAATGTGCTGGCGGTGGAGCCGCGCCGCCTGCTACTCTCGCAGAGTTCACACTGAACGGTGCGGGCGGGCTTGATTTCTACGACGTGAGCTTGGTCGATGGGTATAACCTTCCCATGTTGGTGGTGCCCGAGGGCGGGACCGGGGGGAACTGCACGACCACCGGGTGCGTGGTCGACTTGAACAGCGGGTGCCCCTCGGAGCTGAAGGTGACGGCGAGTGACGAGGGCGTGGCGTGTAAAAGCGCGTGCGAGGCGTTTGGGGAGCCGCAGTACTGCTGTAGCGGGGCCTACGCTACGCCGGACACATGCAAGTCGAGTTCTTATTCGCAGTTCTTTAAAAATGCGTGCCCGAAAGCTTACAGCTATGCGTATGACGATGGCACCAGCACCTTCACCTGTGCTTCCGCCAATTACATCATCACTTTCTGCCCTGCTCCTTCGACCAGCGTGAAGTCGTCGAATGGGACTGTCCCTGGTGCGGCCGGTGTCTCAGCTAGTTTACGTAATACAACGCCCAACATCGTCTTTTTCGCCGTCACTGTTATGGCGGCGGCTTGGCGGTGGCTGCCGCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

355

Amino Acids

37.15

Weight (kDa)

6.14

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 91 - 306 2.8e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 610, 675, 866
AccB7I CCANNNNNTGG 1 cut(s) 291
AccI GTMKAC 1 cut(s) 660
AccII CGCG 2 cut(s) 509, 731
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 2 cut(s) 293, 966
AcuI CTGAAG 1 cut(s) 710
AdeI CACNNNGTG 1 cut(s) 651
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 5 cut(s) 291, 338, 620, 621, 964
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 230, 667
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 3 cut(s) 355, 426, 958
AluBI AGCT 6 cut(s) 328, 576, 688, 842, 849, 980
AluI AGCT 6 cut(s) 328, 576, 688, 842, 849, 980
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 156, 227, 979
Alw44I GTGCAC 1 cut(s) 277
AlwI GGATC 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 3 cut(s) 293, 771, 966
ApaLI GTGCAC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 1051
AspLEI GCGC 2 cut(s) 511, 731
AspS9I GGNCC 4 cut(s) 353, 393, 624, 771
AsuC2I CCSGG 4 cut(s) 297, 316, 628, 649
AsuHPI GGTGA 4 cut(s) 56, 253, 706, 871
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 3 cut(s) 353, 393, 624
BaeGI GKGCMC 5 cut(s) 58, 281, 615, 680, 836
BanI GGYRCC 3 cut(s) 610, 675, 866
BauI CACGAG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 1038
BccI CCATC 5 cut(s) 124, 195, 272, 578, 857
BceAI ACGGC 2 cut(s) 714, 1004
BciT130I CCWGG 3 cut(s) 357, 428, 960
BcnI CCSGG 4 cut(s) 297, 316, 628, 649
BcoDI GTCTC 3 cut(s) 156, 227, 979
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 2 cut(s) 480, 763
BisI GCNGC 8 cut(s) 507, 512, 752, 966, 1035, 1038, 1052, 1055
BlsI GCNGC 8 cut(s) 508, 513, 753, 967, 1036, 1039, 1053, 1056
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 7 cut(s) 297, 316, 357, 428, 628, 649, 960
Bme18I GGWCC 3 cut(s) 353, 393, 624
BmeT110I CYCGRG 1 cut(s) 614
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 353, 393, 624, 771
BmiI GGNNCC 8 cut(s) 354, 505, 612, 625, 677, 750, 772, 868
BmrFI CCNGG 7 cut(s) 297, 316, 357, 428, 628, 649, 960
BpmI CTGGAG 1 cut(s) 378
BpuMI CCSGG 4 cut(s) 297, 316, 628, 649
BsaAI YACGTR 1 cut(s) 989
BsaJI CCNNGG 6 cut(s) 40, 426, 615, 627, 681, 958
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 338, 620, 621, 964
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 3 cut(s) 357, 428, 960
BseDI CCNNGG 6 cut(s) 40, 426, 615, 627, 681, 958
BseLI CCNNNNNNNGG 5 cut(s) 291, 338, 620, 621, 964
BseMII CTCAG 1 cut(s) 990
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 5 cut(s) 58, 281, 615, 680, 836
BseX3I CGGCCG 1 cut(s) 966
BseXI GCAGC 1 cut(s) 1038
BsgI GTGCAG 1 cut(s) 622
Bsh1236I CGCG 2 cut(s) 509, 731
Bsh1285I CGRYCG 1 cut(s) 969
BshFI GGCC 3 cut(s) 295, 773, 968
BshNI GGYRCC 3 cut(s) 610, 675, 866
BsiEI CGRYCG 1 cut(s) 969
BsiHKAI GWGCWC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 7 cut(s) 296, 315, 396, 627, 648, 785, 969
BslFI GGGAC 5 cut(s) 331, 365, 637, 941, 964
BslI CCNNNNNNNGG 5 cut(s) 291, 338, 620, 621, 964
BsmAI GTCTC 3 cut(s) 156, 227, 979
BsmFI GGGAC 5 cut(s) 331, 365, 637, 941, 964
BsmI GAATGC 2 cut(s) 300, 316
BsnI GGCC 3 cut(s) 295, 773, 968
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 5 cut(s) 58, 281, 615, 680, 836
Bsp143I GATC 2 cut(s) 31, 473
Bsp19I CCATGG 1 cut(s) 40
BspANI GGCC 3 cut(s) 295, 773, 968
BspCNI CTCAG 1 cut(s) 989
BspFNI CGCG 2 cut(s) 509, 731
BspLI GGNNCC 8 cut(s) 354, 505, 612, 625, 677, 750, 772, 868
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 1 cut(s) 481
BspT107I GGYRCC 3 cut(s) 610, 675, 866
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 6 cut(s) 40, 426, 615, 627, 681, 958
BssMI GATC 2 cut(s) 31, 473
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 3 cut(s) 357, 428, 960
Bst4CI ACNGT 3 cut(s) 545, 955, 1027
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 6 cut(s) 496, 516, 550, 554, 733, 832
BstDEI CTNAG 1 cut(s) 976
BstDSI CCRYGG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 509, 731
BstHHI GCGC 2 cut(s) 511, 731
BstKTI GATC 2 cut(s) 34, 476
BstMAI GTCTC 3 cut(s) 156, 227, 979
BstMBI GATC 2 cut(s) 31, 473
BstMCI CGRYCG 1 cut(s) 969
BstMWI GCNNNNNNNGC 5 cut(s) 462, 515, 524, 737, 1051
BstNI CCWGG 3 cut(s) 357, 428, 960
BstNSI RCATGY 1 cut(s) 795
BstSCI CCNGG 7 cut(s) 295, 314, 355, 426, 626, 647, 958
BstSFI CTRYAG 2 cut(s) 480, 763
BstSLI GKGCMC 5 cut(s) 58, 281, 615, 680, 836
BstSNI TACGTA 1 cut(s) 989
BstUI CGCG 2 cut(s) 509, 731
BstV1I GCAGC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 473
BstZI CGGCCG 1 cut(s) 966
BsuRI GGCC 3 cut(s) 295, 773, 968
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 336, 536, 1023
Cac8I GCNNGC 6 cut(s) 496, 516, 550, 554, 733, 832
CfoI GCGC 2 cut(s) 511, 731
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 4 cut(s) 353, 393, 624, 771
CseI GACGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 757
CviAII CATG 4 cut(s) 29, 41, 601, 792
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 1 cut(s) 976
DpnI GATC 2 cut(s) 33, 475
DpnII GATC 2 cut(s) 31, 473
DraI TTTAAA 1 cut(s) 823
DraIII CACNNNGTG 1 cut(s) 651
EaeI YGGCCR 2 cut(s) 293, 966
EagI CGGCCG 1 cut(s) 966
EciI GGCGGA 2 cut(s) 427, 880
EclXI CGGCCG 1 cut(s) 966
Eco105I TACGTA 1 cut(s) 989
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 353, 393, 624
Eco52I CGGCCG 1 cut(s) 966
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 614
EcoO109I RGGNCCY 2 cut(s) 353, 771
EcoRII CCWGG 3 cut(s) 355, 426, 958
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 4 cut(s) 32, 44, 604, 795
FaqI GGGAC 5 cut(s) 331, 365, 637, 941, 964
FatI CATG 4 cut(s) 28, 40, 600, 791
FauI CCCGC 5 cut(s) 541, 545, 614, 665, 761
FauNDI CATATG 1 cut(s) 290
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 8 cut(s) 507, 512, 752, 966, 1035, 1038, 1052, 1055
Fsp4HI GCNGC 8 cut(s) 507, 512, 752, 966, 1035, 1038, 1052, 1055
FspBI CTAG 1 cut(s) 981
GlaI GCGC 2 cut(s) 510, 730
GluI GCNGC 8 cut(s) 507, 512, 752, 966, 1035, 1038, 1052, 1055
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 3 cut(s) 295, 773, 968
HapII CCGG 7 cut(s) 296, 315, 396, 627, 648, 785, 969
HgaI GACGC 1 cut(s) 424
HhaI GCGC 2 cut(s) 511, 731
Hin1II CATG 4 cut(s) 32, 44, 604, 795
Hin6I GCGC 2 cut(s) 509, 729
HinP1I GCGC 2 cut(s) 509, 729
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 6 cut(s) 47, 82, 240, 342, 362, 431
HpaII CCGG 7 cut(s) 296, 315, 396, 627, 648, 785, 969
HphI GGTGA 4 cut(s) 56, 253, 706, 871
Hpy166II GTNNAC 5 cut(s) 261, 279, 534, 661, 986
Hpy188I TCNGA 1 cut(s) 685
Hpy8I GTNNAC 5 cut(s) 261, 279, 534, 661, 986
Hpy99I CGWCG 3 cut(s) 259, 572, 946
HpyAV CCTTC 7 cut(s) 109, 224, 236, 605, 685, 886, 933
HpyCH4III ACNGT 3 cut(s) 545, 955, 1027
HpyCH4IV ACGT 4 cut(s) 257, 371, 570, 988
HpyCH4V TGCA 4 cut(s) 279, 482, 639, 795
HpyF10VI GCNNNNNNNGC 5 cut(s) 462, 515, 524, 737, 1051
HpyF3I CTNAG 1 cut(s) 976
HpySE526I ACGT 4 cut(s) 257, 371, 570, 988
Hsp92II CATG 4 cut(s) 32, 44, 604, 795
HspAI GCGC 2 cut(s) 509, 729
Kzo9I GATC 2 cut(s) 31, 473
LmnI GCTCC 5 cut(s) 428, 503, 685, 748, 925
Lsp1109I GCAGC 1 cut(s) 1038
MaeI CTAG 1 cut(s) 981
MaeII ACGT 4 cut(s) 257, 371, 570, 988
MaeIII GTNAC 5 cut(s) 24, 44, 694, 704, 1021
MalI GATC 2 cut(s) 33, 475
MboI GATC 2 cut(s) 31, 473
MboII GAAGA 1 cut(s) 468
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 5 cut(s) 58, 281, 615, 680, 836
MluCI AATT 1 cut(s) 895
MlyI GAGTC 5 cut(s) 41, 76, 249, 371, 425
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 4 cut(s) 610, 691, 703, 730
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 2 cut(s) 605, 1028
MspA1I CMGCKG 1 cut(s) 672
MspI CCGG 7 cut(s) 296, 315, 396, 627, 648, 785, 969
MspR9I CCNGG 7 cut(s) 297, 316, 357, 428, 628, 649, 960
Mva1269I GAATGC 2 cut(s) 300, 316
MvaI CCWGG 3 cut(s) 357, 428, 960
MvnI CGCG 2 cut(s) 509, 731
MwoI GCNNNNNNNGC 5 cut(s) 462, 515, 524, 737, 1051
NciI CCSGG 4 cut(s) 297, 316, 628, 649
NcoI CCATGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 290
NdeII GATC 2 cut(s) 31, 473
NlaIII CATG 4 cut(s) 32, 44, 604, 795
NlaIV GGNNCC 8 cut(s) 354, 505, 612, 625, 677, 750, 772, 868
NmeAIII GCCGAG 1 cut(s) 230
NmuCI GTSAC 5 cut(s) 24, 44, 694, 704, 1021
NspI RCATGY 1 cut(s) 795
PctI GAATGC 2 cut(s) 300, 316
PfeI GAWTC 1 cut(s) 342
PflMI CCANNNNNTGG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 8 cut(s) 508, 513, 753, 967, 1036, 1039, 1053, 1056
PleI GAGTC 5 cut(s) 41, 76, 248, 370, 425
PpsI GAGTC 5 cut(s) 41, 76, 248, 370, 425
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 355, 426, 958
PspGI CCWGG 3 cut(s) 355, 426, 958
PspN4I GGNNCC 8 cut(s) 354, 505, 612, 625, 677, 750, 772, 868
PspPI GGNCC 4 cut(s) 353, 393, 624, 771
PspPPI RGGWCCY 1 cut(s) 353
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 473
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
RseI CAYNNNNRTG 2 cut(s) 605, 1028
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 8 cut(s) 507, 512, 752, 966, 1035, 1038, 1052, 1055
Sau3AI GATC 2 cut(s) 31, 473
Sau96I GGNCC 4 cut(s) 353, 393, 624, 771
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 5 cut(s) 41, 76, 249, 371, 425
ScrFI CCNGG 7 cut(s) 297, 316, 357, 428, 628, 649, 960
SduI GDGCHC 5 cut(s) 58, 281, 615, 680, 836
SfcI CTRYAG 2 cut(s) 480, 763
SinI GGWCC 3 cut(s) 353, 393, 624
SmiMI CAYNNNNRTG 2 cut(s) 605, 1028
SnaBI TACGTA 1 cut(s) 989
Sse9I AATT 1 cut(s) 895
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 7 cut(s) 295, 314, 355, 426, 626, 647, 958
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 3 cut(s) 545, 955, 1027
TaiI ACGT 4 cut(s) 260, 374, 573, 991
TaqI TCGA 7 cut(s) 308, 486, 582, 660, 800, 926, 944
TasI AATT 1 cut(s) 895
TatI WGTACW 1 cut(s) 756
TauI GCSGC 7 cut(s) 509, 514, 754, 968, 1037, 1040, 1057
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 3 cut(s) 343, 543, 1030
TseFI GTSAC 5 cut(s) 24, 44, 694, 704, 1021
TseI GCWGC 1 cut(s) 1051
Tsp45I GTSAC 5 cut(s) 24, 44, 694, 704, 1021
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 3 cut(s) 343, 543, 1030
Van91I CCANNNNNTGG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 277
VpaK11BI GGWCC 3 cut(s) 353, 393, 624
XceI RCATGY 1 cut(s) 795
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 1 cut(s) 981
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.