Rorug02G0078600

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006037
Physical Location & Seq
Forward (+)
6353641 .. 6355144
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0078600.1

Sequence Viewer

Length: 918 bp
ATGGCAGCTATGTTGGCTTTCATGCTCAGCTGGCTCACACCCACCTCCCTCTTCATCTTCCTCAACCTCGCCATCGGCACCCTCGTCATCTCCCACCGCATCTGCAAAACACCTCAGCAACAACCGCAACACGACCAATTCGGTAGACCGCCCTCGCTCCTGGAACGGGTCAGGTCGTTCGACTTCTCCCACTACAACTTCCAACCCGATCACCCGGAACCCCATCACGTAACGGAAAACCCGACCGGATTAGTCCGGACTCCGTCACTCATGGAGCGGCTCAGGTCCATCAACTTTTCCCACTACAACCTCCAACATCACTACCCGGAACCCGAACACGTAGCAGAATACCCAGCACCGGATAACCCGACCGGAATTGTCCGGACTCCCTCGCTCTTGGACAGGGTCAGGTCCTTCAACTTCTCCCAGTACGACTTCCAACAACCCGACCCGGAACCGGAACACGTGACAGAACACCCAACACCGGAAAACCCGACCGGAATAGTCCGGACGCCCTCGCTCCTGGCTCGTCTCAAGTCAATGGATTTCTCCTCTCTCTACAGATCCGACCCGGAAACTGAAGATTTTCATCCGACCGAGGCCGATAATCTGAACCCGAACCCGAAGCCTACGCGAGACCATATGGTTCATCGGAGCAAGTCGGACAGGGGTCATGAAGGTTCGGAAATCCGACCCGAAAAGGTGATAAAGAAGTCCGCCAGCGAGAGAGGATTCGAAGAAAACGAGGGGGGTGTCCGGCAGCGAAGGGGGGTGGAGAAAACGATGTCGTTTGGAGATGATGAAGAAGTTGACGCGAAAGCTGACGACTTCATTAACCGGTTCAAGCAGCAGCTCAAGTTACAGAGGCTCGACTCGCTTTTGCGTTACAAAAGAAATGCTCCAGAGAAACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

305

Amino Acids

35.28

Weight (kDa)

6.24

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 4 - 31 2.9e-09 Domain of unknown function (DUF4408)
DUF761 PF05553 267 - 297 1.9e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 145
AccII CGCG 2 cut(s) 634, 815
AccIII TCCGGA 3 cut(s) 255, 381, 507
AciI CCGC 5 cut(s) 97, 125, 149, 277, 717
AclWI GGATC 1 cut(s) 558
AcuI CTGAAG 1 cut(s) 600
AcvI CACGTG 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 4 cut(s) 166, 358, 457, 484
AflIII ACRYGT 2 cut(s) 337, 463
AgeI ACCGGT 1 cut(s) 837
AgsI TTSAA 2 cut(s) 418, 844
AjnI CCWGG 2 cut(s) 159, 522
AluBI AGCT 4 cut(s) 8, 30, 821, 853
AluI AGCT 4 cut(s) 8, 30, 821, 853
Alw26I GTCTC 2 cut(s) 536, 630
AlwI GGATC 1 cut(s) 558
Aor13HI TCCGGA 3 cut(s) 255, 381, 507
AoxI GGCC 1 cut(s) 600
ApeKI GCWGC 4 cut(s) 5, 760, 847, 850
AsiGI ACCGGT 1 cut(s) 837
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 2 cut(s) 285, 411
AsuC2I CCSGG 4 cut(s) 215, 326, 452, 572
AsuHPI GGTGA 2 cut(s) 203, 715
AsuII TTCGAA 1 cut(s) 735
AvaII GGWCC 2 cut(s) 285, 411
BanI GGYRCC 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 466
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 4 cut(s) 17, 772, 859, 862
BccI CCATC 3 cut(s) 80, 231, 296
BciT130I CCWGG 2 cut(s) 161, 524
BcnI CCSGG 4 cut(s) 215, 326, 452, 572
BcoDI GTCTC 2 cut(s) 536, 630
BfmI CTRYAG 1 cut(s) 559
BisI GCNGC 5 cut(s) 6, 278, 761, 848, 851
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 5 cut(s) 7, 279, 762, 849, 852
Bme1390I CCNGG 6 cut(s) 161, 215, 326, 452, 524, 572
Bme18I GGWCC 2 cut(s) 285, 411
BmgT120I GGNCC 2 cut(s) 285, 411
BmiI GGNNCC 4 cut(s) 79, 219, 330, 456
BmrFI CCNGG 6 cut(s) 161, 215, 326, 452, 524, 572
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 2 cut(s) 114, 281
Bpu1102I GCTNAGC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 518, 839
BpuMI CCSGG 4 cut(s) 215, 326, 452, 572
BsaAI YACGTR 3 cut(s) 229, 340, 466
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 597
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 358, 457, 484
Bse118I RCCGGY 1 cut(s) 837
Bse1I ACTGG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 3 cut(s) 255, 381, 507
BseBI CCWGG 2 cut(s) 161, 524
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 589
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 166, 358, 457, 484
BseMII CTCAG 3 cut(s) 40, 128, 295
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 541
BseXI GCAGC 4 cut(s) 17, 772, 859, 862
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 634, 815
Bsh1285I CGRYCG 4 cut(s) 246, 372, 498, 597
BshFI GGCC 1 cut(s) 602
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 837
BsiEI CGRYCG 4 cut(s) 246, 372, 498, 597
BslI CCNNNNNNNGG 4 cut(s) 166, 358, 457, 484
BsmAI GTCTC 2 cut(s) 536, 630
BsmBI CGTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 630
Bsp119I TTCGAA 1 cut(s) 735
Bsp13I TCCGGA 3 cut(s) 255, 381, 507
Bsp143I GATC 2 cut(s) 208, 563
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 5 cut(s) 97, 125, 149, 277, 717
BspANI GGCC 1 cut(s) 602
BspCNI CTCAG 3 cut(s) 39, 127, 294
BspEI TCCGGA 3 cut(s) 255, 381, 507
BspFNI CGCG 2 cut(s) 634, 815
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 4 cut(s) 79, 219, 330, 456
BspPI GGATC 1 cut(s) 558
BspT104I TTCGAA 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 630
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 837
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 837
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 2 cut(s) 208, 563
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 161, 524
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 512
BstBAI YACGTR 3 cut(s) 229, 340, 466
BstBI TTCGAA 1 cut(s) 735
BstC8I GCNNGC 2 cut(s) 32, 721
BstDEI CTNAG 3 cut(s) 26, 114, 281
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 2 cut(s) 634, 815
BstKTI GATC 2 cut(s) 211, 566
BstMAI GTCTC 2 cut(s) 536, 630
BstMBI GATC 2 cut(s) 208, 563
BstMCI CGRYCG 4 cut(s) 246, 372, 498, 597
BstMWI GCNNNNNNNGC 4 cut(s) 14, 31, 124, 874
BstNI CCWGG 2 cut(s) 161, 524
BstPAI GACNNNNGTC 1 cut(s) 669
BstSCI CCNGG 6 cut(s) 159, 213, 324, 450, 522, 570
BstSFI CTRYAG 1 cut(s) 559
BstUI CGCG 2 cut(s) 634, 815
BstV1I GCAGC 4 cut(s) 17, 772, 859, 862
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BsuRI GGCC 1 cut(s) 602
BtsCI GGATG 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 32, 721
CciI TCATGA 1 cut(s) 673
Cfr10I RCCGGY 1 cut(s) 837
Cfr13I GGNCC 2 cut(s) 285, 411
CseI GACGC 2 cut(s) 520, 821
Csp6I GTAC 1 cut(s) 430
CspAI ACCGGT 1 cut(s) 837
CviAII CATG 3 cut(s) 22, 271, 674
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 26, 114, 281
DpnI GATC 2 cut(s) 210, 565
DpnII GATC 2 cut(s) 208, 563
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 706
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 2 cut(s) 285, 411
Eco57I CTGAAG 1 cut(s) 600
Eco72I CACGTG 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 159, 522
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 3 cut(s) 25, 274, 677
FaiI YATR 6 cut(s) 11, 23, 272, 642, 644, 675
FatI CATG 3 cut(s) 21, 270, 673
FauNDI CATATG 1 cut(s) 642
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 6, 278, 761, 848, 851
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 5 cut(s) 6, 278, 761, 848, 851
GluI GCNGC 5 cut(s) 6, 278, 761, 848, 851
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 1 cut(s) 602
HgaI GACGC 2 cut(s) 520, 821
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 3 cut(s) 25, 274, 677
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 4 cut(s) 259, 385, 732, 872
HphI GGTGA 2 cut(s) 203, 715
Hpy166II GTNNAC 2 cut(s) 146, 811
Hpy188I TCNGA 7 cut(s) 568, 594, 612, 654, 664, 685, 692
Hpy188III TCNNGA 5 cut(s) 256, 382, 508, 674, 902
Hpy8I GTNNAC 2 cut(s) 146, 811
HpyAV CCTTC 3 cut(s) 424, 671, 759
HpyCH4IV ACGT 3 cut(s) 228, 339, 465
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 31, 124, 874
HpyF3I CTNAG 3 cut(s) 26, 114, 281
HpySE526I ACGT 3 cut(s) 228, 339, 465
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 3 cut(s) 25, 274, 677
Kpn2I TCCGGA 3 cut(s) 255, 381, 507
Kzo9I GATC 2 cut(s) 208, 563
LmnI GCTCC 5 cut(s) 162, 274, 525, 654, 904
Lsp1109I GCAGC 4 cut(s) 17, 772, 859, 862
LweI GCATC 1 cut(s) 108
MaeII ACGT 3 cut(s) 228, 339, 465
MaeIII GTNAC 5 cut(s) 229, 264, 466, 858, 884
MalI GATC 2 cut(s) 210, 565
MbiI CCGCTC 1 cut(s) 277
MboI GATC 2 cut(s) 208, 563
MboII GAAGA 5 cut(s) 43, 49, 593, 749, 815
MflI RGATCY 1 cut(s) 563
MluCI AATT 3 cut(s) 137, 375, 913
MlyI GAGTC 3 cut(s) 253, 379, 866
MmeI TCCRAC 7 cut(s) 226, 337, 463, 591, 617, 642, 715
MroI TCCGGA 3 cut(s) 255, 381, 507
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 834, 916
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 6 cut(s) 161, 215, 326, 452, 524, 572
MvaI CCWGG 2 cut(s) 161, 524
MvnI CGCG 2 cut(s) 634, 815
MwoI GCNNNNNNNGC 4 cut(s) 14, 31, 124, 874
NciI CCSGG 4 cut(s) 215, 326, 452, 572
NdeI CATATG 1 cut(s) 642
NdeII GATC 2 cut(s) 208, 563
NlaIII CATG 3 cut(s) 25, 274, 677
NlaIV GGNNCC 4 cut(s) 79, 219, 330, 456
NmuCI GTSAC 2 cut(s) 264, 466
NspV TTCGAA 1 cut(s) 735
PagI TCATGA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 239, 741
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 732
PflFI GACNNNGTC 2 cut(s) 262, 404
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 837
PkrI GCNGC 5 cut(s) 7, 279, 762, 849, 852
PleI GAGTC 3 cut(s) 253, 379, 866
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
PpsI GAGTC 3 cut(s) 253, 379, 866
Ppu21I YACGTR 3 cut(s) 229, 340, 466
PpuMI RGGWCCY 1 cut(s) 411
PshAI GACNNNNGTC 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 159, 522
PspCI CACGTG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 159, 522
PspN4I GGNNCC 4 cut(s) 79, 219, 330, 456
PspPI GGNCC 2 cut(s) 285, 411
PspPPI RGGWCCY 1 cut(s) 411
PsuI RGATCY 1 cut(s) 563
PsyI GACNNNGTC 2 cut(s) 262, 404
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SaqAI TTAA 2 cut(s) 834, 916
SatI GCNGC 5 cut(s) 6, 278, 761, 848, 851
Sau3AI GATC 2 cut(s) 208, 563
Sau96I GGNCC 2 cut(s) 285, 411
SchI GAGTC 3 cut(s) 253, 379, 866
ScrFI CCNGG 6 cut(s) 161, 215, 326, 452, 524, 572
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 735
SinI GGWCC 2 cut(s) 285, 411
SmlI CTYRAG 2 cut(s) 533, 854
SmoI CTYRAG 2 cut(s) 533, 854
Sse9I AATT 3 cut(s) 137, 375, 913
SsiI CCGC 5 cut(s) 97, 125, 149, 277, 717
StyD4I CCNGG 6 cut(s) 159, 213, 324, 450, 522, 570
TaiI ACGT 3 cut(s) 231, 342, 468
TaqI TCGA 3 cut(s) 180, 735, 870
TaqII GACCGA 1 cut(s) 611
TasI AATT 3 cut(s) 137, 375, 913
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 732
Tru1I TTAA 2 cut(s) 834, 916
Tru9I TTAA 2 cut(s) 834, 916
TseFI GTSAC 2 cut(s) 264, 466
TseI GCWGC 4 cut(s) 5, 760, 847, 850
Tsp45I GTSAC 2 cut(s) 264, 466
TspDTI ATGAA 7 cut(s) 10, 43, 578, 638, 690, 816, 820
TspGWI ACGGA 2 cut(s) 248, 252
Tth111I GACNNNGTC 2 cut(s) 262, 404
VpaK11BI GGWCC 2 cut(s) 285, 411
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.