Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

6408789 .. 6411481

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTGAGGAGAGATCGACCGGAGTCGTGAAGTGGTTCAATGACACCAAGGGCTTCGGCTTTATCACTCCTGATAACAACACCGAAGATCTGTTCGTCCACCAATCGTCGATCAAATCCGACGGCTTCCGCACCGTCGCCGAGGGCGATACTGTTGAGTTTCTCATCGCCGTCGGCGATGACGGGAAGATGAAGGCTGTCGATGTGACCGGCCCGAACGGCGCGCCTCTGCCGGGGAAGAAGGAGAGCTTCGGCCGGTCCGGCGGCCGTGGCGGTGGGAGAGATTCTGCTGGATTTGGCGGTGCGTGGAGAGGTGAAGATCGCCGCAACGGTGGCGGCGGCGGCGGCGGCGGGTGTTATAATTGTGGCGATACCGGACACAGAGCTAGGGATTGTGATCGTGGTGGTAACGGCGGCGGAGGCCGTGGTGGTGATGGATGCTTTACTTGCGGAGGGTTTGGTCACATGGCCAGGAACTGTCCTTCTGGGAGCGGCGGCGGTGGCCGTGGTGGTGATGGCTGCTACAAGTGTGGTGATCTGGGCCATATGGCAAGAGACTGTTTCAATGGAGGATCCGGTGGTGGAGGCGGCGGCGGCGGCGCATGTTTTACTTGTGGGGAGGCTGGTCACATGGCTAGGGATTGTGGCAGGGGAGGCGGTGGTGGTCGCGGTGGCGATCGGTATGGCTACAGTTCTGGATCCGGTGGCCGCGGCGGTGGCTGTTACAACTGTGGGGAGGCTGGCCATTTCGCCAAGGAGTGTCCAAATTATCATCTTGGGGCAACCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

264

Amino Acids

26.06

Weight (kDa)

7.0

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	2.5e-24	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	118 - 133	8.4e-07	Zinc knuckle
zf-CCHC	PF00098	146 - 162	7e-06	Zinc knuckle
zf-CCHC	PF00098	173 - 188	5.9e-07	Zinc knuckle
zf-CCHC	PF00098	201 - 215	3.9e-06	Zinc knuckle
zf-CCHC	PF00098	240 - 256	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccBSI	CCGCTC	1 cut(s)	492
AccII	CGCG	3 cut(s)	224, 669, 711
AclWI	GGATC	4 cut(s)	567, 580, 693, 706
AcoI	YGGCCR	6 cut(s)	253, 265, 468, 502, 706, 742
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	40, 565
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	249, 386
AluI	AGCT	2 cut(s)	249, 386
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	4 cut(s)	567, 580, 693, 706
AlwNI	CAGNNNCTG	1 cut(s)	477
AoxI	GGCC	9 cut(s)	211, 253, 265, 421, 468, 502, 541, 706, 742
ApeKI	GCWGC	1 cut(s)	519
AscI	GGCGCGCC	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	3 cut(s)	224, 226, 602
AspS9I	GGNCC	3 cut(s)	212, 258, 541
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	326, 443, 524, 545
AvaII	GGWCC	1 cut(s)	258
BalI	TGGCCA	2 cut(s)	470, 744
BamHI	GGATCC	2 cut(s)	572, 698
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	2 cut(s)	428, 509
BceAI	ACGGC	7 cut(s)	139, 155, 235, 252, 408, 427, 489
BciT130I	CCWGG	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	387, 636
BfmI	CTRYAG	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	219, 261
BglII	AGATCT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	234, 472
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	212, 258, 541
BmiI	GGNNCC	2 cut(s)	574, 700
BmrFI	CCNGG	2 cut(s)	234, 472
BmsI	GCATC	1 cut(s)	428
BoxI	GACNNNNGTC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	8 cut(s)	48, 141, 233, 268, 424, 505, 709, 753
BsaWI	WCCGGW	4 cut(s)	20, 374, 575, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	2 cut(s)	209, 255
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	8 cut(s)	48, 141, 233, 268, 424, 505, 709, 753
BseGI	GGATG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	233
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	2 cut(s)	253, 265
BseXI	GCAGC	1 cut(s)	506
Bsh1236I	CGCG	3 cut(s)	224, 669, 711
Bsh1285I	CGRYCG	4 cut(s)	21, 256, 268, 679
BshFI	GGCC	9 cut(s)	213, 255, 267, 423, 470, 504, 543, 708, 744
BsiEI	CGRYCG	4 cut(s)	21, 256, 268, 679
BsiSI	CCGG	8 cut(s)	21, 210, 233, 256, 261, 375, 576, 702
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	9 cut(s)	213, 255, 267, 423, 470, 504, 543, 708, 744
Bsp143I	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
BspANI	GGCC	9 cut(s)	213, 255, 267, 423, 470, 504, 543, 708, 744
BspFNI	CGCG	3 cut(s)	224, 669, 711
BspLI	GGNNCC	2 cut(s)	574, 700
BspPI	GGATC	4 cut(s)	567, 580, 693, 706
BsrBI	CCGCTC	1 cut(s)	492
BsrFI	RCCGGY	2 cut(s)	209, 255
BssAI	RCCGGY	2 cut(s)	209, 255
BssECI	CCNNGG	8 cut(s)	48, 141, 233, 268, 424, 505, 709, 753
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
BssT1I	CCWWGG	2 cut(s)	48, 753
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	7 cut(s)	136, 154, 332, 479, 560, 692, 731
BstC8I	GCNNGC	2 cut(s)	224, 742
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	4 cut(s)	268, 424, 505, 709
BstF5I	GGATG	1 cut(s)	443
BstFNI	CGCG	3 cut(s)	224, 669, 711
BstHHI	GCGC	3 cut(s)	224, 226, 602
BstKTI	GATC	9 cut(s)	17, 91, 114, 322, 400, 538, 575, 679, 701
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
BstMCI	CGRYCG	4 cut(s)	21, 256, 268, 679
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	606
BstPAI	GACNNNNGTC	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	232, 470
BstSFI	CTRYAG	1 cut(s)	688
BstUI	CGCG	3 cut(s)	224, 669, 711
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	3 cut(s)	88, 572, 698
BstYI	RGATCY	3 cut(s)	88, 572, 698
BstZI	CGGCCG	2 cut(s)	253, 265
BsuRI	GGCC	9 cut(s)	213, 255, 267, 423, 470, 504, 543, 708, 744
BtgI	CCRYGG	4 cut(s)	268, 424, 505, 709
BtgZI	GCGATG	2 cut(s)	151, 192
BtsCI	GGATG	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	224, 742
CaiI	CAGNNNCTG	1 cut(s)	477
CfoI	GCGC	3 cut(s)	224, 226, 602
Cfr10I	RCCGGY	2 cut(s)	209, 255
Cfr13I	GGNCC	3 cut(s)	212, 258, 541
Cfr42I	CCGCGG	1 cut(s)	712
CpoI	CGGWCCG	1 cut(s)	258
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	4 cut(s)	466, 603, 631, 787
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	9 cut(s)	16, 90, 113, 321, 399, 537, 574, 678, 700
DpnII	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
EaeI	YGGCCR	6 cut(s)	253, 265, 468, 502, 706, 742
EagI	CGGCCG	2 cut(s)	253, 265
EciI	GGCGGA	1 cut(s)	432
EclXI	CGGCCG	2 cut(s)	253, 265
Eco130I	CCWWGG	2 cut(s)	48, 753
Eco47I	GGWCC	1 cut(s)	258
Eco52I	CGGCCG	2 cut(s)	253, 265
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	48, 753
ErhI	CCWWGG	2 cut(s)	48, 753
FaeI	CATG	4 cut(s)	469, 606, 634, 790
FaiI	YATR	8 cut(s)	360, 467, 546, 548, 604, 632, 684, 788
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	4 cut(s)	465, 602, 630, 786
FauI	CCCGC	1 cut(s)	344
FauNDI	CATATG	1 cut(s)	546
FokI	GGATG	1 cut(s)	450
FspBI	CTAG	2 cut(s)	387, 636
GlaI	GCGC	3 cut(s)	223, 225, 601
HaeIII	GGCC	9 cut(s)	213, 255, 267, 423, 470, 504, 543, 708, 744
HapII	CCGG	8 cut(s)	21, 210, 233, 256, 261, 375, 576, 702
HhaI	GCGC	3 cut(s)	224, 226, 602
Hin1II	CATG	4 cut(s)	469, 606, 634, 790
Hin6I	GCGC	3 cut(s)	222, 224, 600
HinP1I	GCGC	3 cut(s)	222, 224, 600
HinfI	GANTC	2 cut(s)	24, 284
HpaII	CCGG	8 cut(s)	21, 210, 233, 256, 261, 375, 576, 702
HphI	GGTGA	4 cut(s)	326, 443, 524, 545
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	28, 71, 696
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	112, 125, 140, 176
HpyAV	CCTTC	3 cut(s)	187, 235, 492
HpyCH4III	ACNGT	7 cut(s)	136, 154, 332, 479, 560, 692, 731
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	469, 606, 634, 790
HspAI	GCGC	3 cut(s)	222, 224, 600
KspI	CCGCGG	1 cut(s)	712
Kzo9I	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	2 cut(s)	387, 636
MaeIII	GTNAC	5 cut(s)	205, 407, 461, 626, 722
MalI	GATC	9 cut(s)	16, 90, 113, 321, 399, 537, 574, 678, 700
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
MboII	GAAGA	4 cut(s)	98, 199, 250, 329
MflI	RGATCY	3 cut(s)	88, 572, 698
MlsI	TGGCCA	2 cut(s)	470, 744
MluCI	AATT	2 cut(s)	361, 766
MluNI	TGGCCA	2 cut(s)	470, 744
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	2 cut(s)	470, 744
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	2 cut(s)	470, 744
Msp20I	TGGCCA	2 cut(s)	470, 744
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	8 cut(s)	21, 210, 233, 256, 261, 375, 576, 702
MspR9I	CCNGG	2 cut(s)	234, 472
MvaI	CCWGG	1 cut(s)	472
MvnI	CGCG	3 cut(s)	224, 669, 711
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
NlaIII	CATG	4 cut(s)	469, 606, 634, 790
NlaIV	GGNNCC	2 cut(s)	574, 700
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	205, 461, 626
NspI	RCATGY	1 cut(s)	606
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 174
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	284
Ple19I	CGATCG	1 cut(s)	679
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshAI	GACNNNNGTC	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	574, 700
PspPI	GGNCC	3 cut(s)	212, 258, 541
PstNI	CAGNNNCTG	1 cut(s)	477
PsuI	RGATCY	3 cut(s)	88, 572, 698
PteI	GCGCGC	1 cut(s)	222
PvuI	CGATCG	1 cut(s)	679
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	712
Sau3AI	GATC	9 cut(s)	14, 88, 111, 319, 397, 535, 572, 676, 698
Sau96I	GGNCC	3 cut(s)	212, 258, 541
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	234, 472
SetI	ASST	3 cut(s)	251, 316, 388
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	688
Sfr303I	CCGCGG	1 cut(s)	712
SgrBI	CCGCGG	1 cut(s)	712
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	258
Sse9I	AATT	2 cut(s)	361, 766
SspMI	CTAG	2 cut(s)	387, 636
StyD4I	CCNGG	2 cut(s)	232, 470
StyI	CCWWGG	2 cut(s)	48, 753
TaaI	ACNGT	7 cut(s)	136, 154, 332, 479, 560, 692, 731
TaqI	TCGA	3 cut(s)	17, 110, 201
TasI	AATT	2 cut(s)	361, 766
TfiI	GAWTC	1 cut(s)	284
TseFI	GTSAC	3 cut(s)	205, 461, 626
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	3 cut(s)	205, 461, 626
TspDTI	ATGAA	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	258
XceI	RCATGY	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	387, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.