Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

20089622 .. 20090416

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1244400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGAGGAGAGATCGACCGGGAAGGTGCGGTGGTTCAACGACGTCAAGGGCTACGGCTTCATCACGCCCGACGACGGAGGCGAGGACCTCTTCGTCCACCAGTCCTCGATAAGATCCGACGGTTTCCGCACCGTCGCGGAGGGCGAGACCGTCGAGTTCTTTATCGACTTCGGCGACGACGGCAAGACCAAAGCCGTCGATGTGACAGGACCTAACGGCGCGCCGTTGGTCGGTAACAAGAAGGAGACCTTCGGTCGCTCTGGGGGCCGCGGTGGCGGTGGTGGCGGTTTTGGATTTGGAGGTGGATGGAGAGGCGGTGATAGGAGGAATGGAGGCGGTGCCGGTGGCGATGGGTGTTATAGTTGCGGCGAGCCTGGGCACATGGCTAGAGATTGCCGTCAGGGCAGTGGAGGGGGCGGAGCCGGTGGTGGTGGCTGTTTTACTTGTGGTGGGTATGGCCACGTGGCAAGGGTCTGCCCTAATGGGACTAGCGGTGGTGGTGGAGGTGGCGGCGGCGGCGGCGGCGGCGGCTGCTACAAGTGTGGTGCATTTGGGCATATGGCGAGGGACTGTGCTACTGGTGGAGGCGGCGGCGCTGGTGCTGGTTCTGGTGCTTGCTATAGCTGTGGGGCATATGGCCACATGGCGAGGGATTGCAGCGGCGGCGGCGGCGATAGCAGTGCTCGTGGAGGCGGACGATATGGATTGAGCTCTGGATCAGGTTGTTATAACTGTGGGGAAGCAGGGCATTTTGCTAAGGAGTGTGCTAATCCTCCTAATCCCAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

265

Amino Acids

25.52

Weight (kDa)

6.58

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	3.3e-23	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	119 - 135	1.2e-07	Zinc knuckle
zf-CCHC	PF00098	178 - 193	3e-06	Zinc knuckle
zf-CCHC	PF00098	206 - 221	8.3e-06	Zinc knuckle
zf-CCHC	PF00098	242 - 257	7.2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	3 cut(s)	140, 224, 273
AclWI	GGATC	2 cut(s)	111, 727
AcoI	YGGCCR	2 cut(s)	460, 640
AcvI	CACGTG	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	77, 233
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	627, 714
AluI	AGCT	2 cut(s)	627, 714
Alw21I	GWGCWC	2 cut(s)	688, 716
Alw26I	GTCTC	2 cut(s)	143, 242
AlwI	GGATC	2 cut(s)	111, 727
AoxI	GGCC	3 cut(s)	268, 460, 640
ApeKI	GCWGC	2 cut(s)	534, 660
AscI	GGCGCGCC	1 cut(s)	222
AspLEI	GCGC	3 cut(s)	224, 226, 599
AspS9I	GGNCC	3 cut(s)	88, 212, 268
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	88, 212
BaeGI	GKGCMC	1 cut(s)	384
BalI	TGGCCA	2 cut(s)	462, 642
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	716
BauI	CACGAG	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	688, 716
BbvI	GCAGC	2 cut(s)	521, 672
BccI	CCATC	2 cut(s)	303, 347
BceAI	ACGGC	6 cut(s)	73, 182, 199, 211, 235, 384
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	143, 242
BfaI	CTAG	2 cut(s)	390, 492
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	600
BglI	GCCNNNNNGGC	2 cut(s)	276, 405
Bme1390I	CCNGG	2 cut(s)	22, 378
Bme18I	GGWCC	2 cut(s)	88, 212
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	88, 212, 268
BmiI	GGNNCC	3 cut(s)	269, 343, 424
BmrFI	CCNGG	2 cut(s)	22, 378
Bpu10I	CCTNAGC	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	143, 242
BsaJI	CCNNGG	2 cut(s)	271, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 233
Bse118I	RCCGGY	2 cut(s)	344, 425
Bse1I	ACTGG	2 cut(s)	103, 586
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	271, 377
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	77, 233
BseNI	ACTGG	2 cut(s)	103, 586
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	521, 672
Bsh1236I	CGCG	3 cut(s)	140, 224, 273
Bsh1285I	CGRYCG	2 cut(s)	21, 259
BshFI	GGCC	3 cut(s)	270, 462, 642
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	2 cut(s)	21, 259
BsiHKAI	GWGCWC	2 cut(s)	688, 716
BsiSI	CCGG	3 cut(s)	21, 345, 426
BslFI	GGGAC	2 cut(s)	502, 584
BslI	CCNNNNNNNGG	2 cut(s)	77, 233
BsmAI	GTCTC	2 cut(s)	143, 242
BsmFI	GGGAC	2 cut(s)	502, 584
BsnI	GGCC	3 cut(s)	270, 462, 642
Bso31I	GGTCTC	2 cut(s)	143, 242
Bsp1286I	GDGCHC	3 cut(s)	384, 688, 716
Bsp143I	GATC	3 cut(s)	14, 116, 719
BspANI	GGCC	3 cut(s)	270, 462, 642
BspFNI	CGCG	3 cut(s)	140, 224, 273
BspLI	GGNNCC	3 cut(s)	269, 343, 424
BspPI	GGATC	2 cut(s)	111, 727
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	143, 242
BsrFI	RCCGGY	2 cut(s)	344, 425
BsrI	ACTGG	2 cut(s)	103, 586
BssAI	RCCGGY	2 cut(s)	344, 425
BssECI	CCNNGG	2 cut(s)	271, 377
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	3 cut(s)	14, 116, 719
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	125, 136, 154, 575, 737
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	224, 374, 619
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	3 cut(s)	140, 224, 273
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	3 cut(s)	224, 226, 599
BstKTI	GATC	3 cut(s)	17, 119, 722
BstMAI	GTCTC	2 cut(s)	143, 242
BstMBI	GATC	3 cut(s)	14, 116, 719
BstMCI	CGRYCG	2 cut(s)	21, 259
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	20, 376
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	3 cut(s)	140, 224, 273
BstV1I	GCAGC	2 cut(s)	521, 672
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	270, 462, 642
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	2 cut(s)	415, 688
BtsIMutI	CAGTG	2 cut(s)	415, 688
Cac8I	GCNNGC	3 cut(s)	224, 374, 619
CfoI	GCGC	3 cut(s)	224, 226, 599
Cfr10I	RCCGGY	2 cut(s)	344, 425
Cfr13I	GGNCC	3 cut(s)	88, 212, 268
Cfr42I	CCGCGG	1 cut(s)	274
CviAII	CATG	2 cut(s)	385, 646
DdeI	CTNAG	1 cut(s)	759
DpnI	GATC	3 cut(s)	16, 118, 721
DpnII	GATC	3 cut(s)	14, 116, 719
DrdI	GACNNNNNNGTC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	2 cut(s)	460, 640
Eam1104I	CTCTTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	3 cut(s)	20, 435, 711
Ecl136II	GAGCTC	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	716
Eco31I	GGTCTC	2 cut(s)	143, 242
Eco47I	GGWCC	2 cut(s)	88, 212
Eco53kI	GAGCTC	1 cut(s)	714
Eco72I	CACGTG	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	88, 212
EcoRII	CCWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	716
FaeI	CATG	2 cut(s)	388, 649
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	502, 584
FatI	CATG	2 cut(s)	384, 645
FauNDI	CATATG	2 cut(s)	561, 637
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	716
FspBI	CTAG	2 cut(s)	390, 492
GlaI	GCGC	3 cut(s)	223, 225, 598
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	270, 462, 642
HapII	CCGG	3 cut(s)	21, 345, 426
HhaI	GCGC	3 cut(s)	224, 226, 599
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	388, 649
Hin6I	GCGC	3 cut(s)	222, 224, 597
HinP1I	GCGC	3 cut(s)	222, 224, 597
HpaII	CCGG	3 cut(s)	21, 345, 426
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	717
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	9 cut(s)	47, 77, 80, 125, 140, 158, 182, 185, 203
HpyAV	CCTTC	3 cut(s)	19, 238, 262
HpyCH4III	ACNGT	5 cut(s)	125, 136, 154, 575, 737
HpyCH4IV	ACGT	2 cut(s)	45, 465
HpyCH4V	TGCA	2 cut(s)	551, 660
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	2 cut(s)	45, 465
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	388, 649
HspAI	GCGC	3 cut(s)	222, 224, 597
KspI	CCGCGG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	14, 116, 719
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	2 cut(s)	521, 672
MaeI	CTAG	2 cut(s)	390, 492
MaeII	ACGT	2 cut(s)	45, 465
MaeIII	GTNAC	2 cut(s)	205, 236
MalI	GATC	3 cut(s)	16, 118, 721
MboI	GATC	3 cut(s)	14, 116, 719
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	3 cut(s)	384, 688, 716
MlsI	TGGCCA	2 cut(s)	462, 642
MluNI	TGGCCA	2 cut(s)	462, 642
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	2 cut(s)	462, 642
MscI	TGGCCA	2 cut(s)	462, 642
Msp20I	TGGCCA	2 cut(s)	462, 642
MspA1I	CMGCKG	2 cut(s)	273, 663
MspI	CCGG	3 cut(s)	21, 345, 426
MspR9I	CCNGG	2 cut(s)	22, 378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	3 cut(s)	140, 224, 273
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	2 cut(s)	561, 637
NdeII	GATC	3 cut(s)	14, 116, 719
NlaIII	CATG	2 cut(s)	388, 649
NlaIV	GGNNCC	3 cut(s)	269, 343, 424
NmuCI	GTSAC	1 cut(s)	205
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 144, 174
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	2 cut(s)	88, 212
PsiI	TTATAA	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	716
Psp5II	RGGWCCY	2 cut(s)	88, 212
Psp6I	CCWGG	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	269, 343, 424
PspPI	GGNCC	3 cut(s)	88, 212, 268
PspPPI	RGGWCCY	2 cut(s)	88, 212
PsuI	RGATCY	1 cut(s)	116
PteI	GCGCGC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	716
SacII	CCGCGG	1 cut(s)	274
Sau3AI	GATC	3 cut(s)	14, 116, 719
Sau96I	GGNCC	3 cut(s)	88, 212, 268
ScrFI	CCNGG	2 cut(s)	22, 378
SduI	GDGCHC	3 cut(s)	384, 688, 716
SfcI	CTRYAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	274
SgrBI	CCGCGG	1 cut(s)	274
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	2 cut(s)	88, 212
SspMI	CTAG	2 cut(s)	390, 492
SstI	GAGCTC	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	20, 376
TaaI	ACNGT	5 cut(s)	125, 136, 154, 575, 737
TaiI	ACGT	2 cut(s)	48, 468
TaqI	TCGA	5 cut(s)	17, 110, 156, 168, 201
TaqII	GACCGA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	415, 688
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	534, 660
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	415, 688
VpaK11BI	GGWCC	2 cut(s)	88, 212
XspI	CTAG	2 cut(s)	390, 492
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.