Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

55690612 .. 55691855

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTGCCGAGACCGCCAGATCCACCGGCACGGTCAAGTGGTTCAGCGCGCAGAAAGGGTTCGGCTTCATATCCCCGGAGGACGGCGGCGAGGACCTCTTCGTCCACCAGACTTCGATCCAGTCCGACGGCTTCCGCACCCTTTCCGAGGGCCAGGCCGTCGAGTTCCTCGTCGAAGTCAGCGAAGACGGCCGCACCAAAGCCGTCGACGTCGTCAACCTCACCCGATCCCGCCGTCCTGGCTTCGACCGCCGAGGAAGCGGCCGCGGCGGCAGTAGGGGCAGAGGCCGCGGTGGTTATGGGAGGTCTGGCGGAGGCCCGGAGGAATATAGTGTCGCCAGAGGCGGAGGGAGGGGTGACGGTTATGGCGGTCGCGGAGGTTATGGTGGTGGTGGTCGTGGCGGTGGTAGTGAGTGCTACAGTTGCGGTGAAATTGGGCATTTGGCGAGGGACTGTTACGAGGGCGGTGGCGGGGGTGGGAGATTTGGCGGCCGTGGGAGAGGTGGAGGTAGAGGCTACGGTGGCCGTGGTGGCGGCCGGGGGCGTCGTGGTGGTGGTTGTTATAATTGTGGAGAGGAAGGGCATTTGGCAAGGGAATGCGCGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

202

Amino Acids

20.58

Weight (kDa)

9.32

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	9 - 72	1.3e-25	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	138 - 152	2.3e-06	Zinc knuckle
zf-CCHC	PF00098	186 - 200	2.9e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	5 cut(s)	50, 267, 291, 375, 602
AclWI	GGATC	3 cut(s)	15, 112, 222
AcoI	YGGCCR	5 cut(s)	190, 262, 490, 523, 535
AcyI	GRCGYC	2 cut(s)	210, 544
AfiI	CCNNNNNNNGG	2 cut(s)	83, 148
AjnI	CCWGG	2 cut(s)	153, 238
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	15, 112, 222
AoxI	GGCC	9 cut(s)	151, 156, 190, 262, 286, 316, 490, 523, 535
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	50, 52, 602, 604
AspS9I	GGNCC	3 cut(s)	94, 151, 317
AsuC2I	CCSGG	3 cut(s)	77, 320, 539
AsuHPI	GGTGA	3 cut(s)	214, 368, 440
AvaII	GGWCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	192
BceAI	ACGGC	8 cut(s)	100, 143, 145, 188, 205, 219, 477, 510
BciT130I	CCWGG	2 cut(s)	155, 240
BcnI	CCSGG	3 cut(s)	77, 320, 539
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	418
BglI	GCCNNNNNGGC	3 cut(s)	240, 270, 531
Bme1390I	CCNGG	5 cut(s)	77, 155, 240, 320, 539
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	94, 151, 317
BmrFI	CCNGG	5 cut(s)	77, 155, 240, 320, 539
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	3 cut(s)	77, 320, 539
BsaHI	GRCGYC	2 cut(s)	210, 544
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	8 cut(s)	75, 147, 253, 265, 289, 493, 526, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 148
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	155, 240
BseDI	CCNNGG	8 cut(s)	75, 147, 253, 265, 289, 493, 526, 538
BseLI	CCNNNNNNNGG	2 cut(s)	83, 148
BseNI	ACTGG	1 cut(s)	121
BsePI	GCGCGC	2 cut(s)	48, 600
BseX3I	CGGCCG	4 cut(s)	190, 262, 490, 535
Bsh1236I	CGCG	5 cut(s)	50, 267, 291, 375, 602
Bsh1285I	CGRYCG	6 cut(s)	193, 250, 265, 373, 493, 538
BshFI	GGCC	9 cut(s)	153, 158, 192, 264, 288, 318, 492, 525, 537
BsiEI	CGRYCG	6 cut(s)	193, 250, 265, 373, 493, 538
BsiSI	CCGG	4 cut(s)	27, 77, 320, 538
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	83, 148
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	9 cut(s)	153, 158, 192, 264, 288, 318, 492, 525, 537
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	20, 117, 227
BspANI	GGCC	9 cut(s)	153, 158, 192, 264, 288, 318, 492, 525, 537
BspFNI	CGCG	5 cut(s)	50, 267, 291, 375, 602
BspPI	GGATC	3 cut(s)	15, 112, 222
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	8 cut(s)	75, 147, 253, 265, 289, 493, 526, 538
BssHII	GCGCGC	2 cut(s)	48, 600
BssMI	GATC	3 cut(s)	20, 117, 227
BssNI	GRCGYC	2 cut(s)	210, 544
Bst2UI	CCWGG	2 cut(s)	155, 240
Bst4CI	ACNGT	5 cut(s)	34, 362, 422, 455, 521
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	210, 544
BstC8I	GCNNGC	2 cut(s)	50, 602
BstDSI	CCRYGG	4 cut(s)	265, 289, 493, 526
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstFNI	CGCG	5 cut(s)	50, 267, 291, 375, 602
BstHHI	GCGC	4 cut(s)	50, 52, 602, 604
BstKTI	GATC	3 cut(s)	23, 120, 230
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	20, 117, 227
BstMCI	CGRYCG	6 cut(s)	193, 250, 265, 373, 493, 538
BstNI	CCWGG	2 cut(s)	155, 240
BstSCI	CCNGG	5 cut(s)	75, 153, 238, 318, 537
BstSFI	CTRYAG	1 cut(s)	418
BstUI	CGCG	5 cut(s)	50, 267, 291, 375, 602
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	4 cut(s)	190, 262, 490, 535
BsuRI	GGCC	9 cut(s)	153, 158, 192, 264, 288, 318, 492, 525, 537
BtgI	CCRYGG	4 cut(s)	265, 289, 493, 526
Cac8I	GCNNGC	2 cut(s)	50, 602
CciNI	GCGGCCGC	1 cut(s)	262
CfoI	GCGC	4 cut(s)	50, 52, 602, 604
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	94, 151, 317
Cfr42I	CCGCGG	2 cut(s)	268, 292
CseI	GACGC	1 cut(s)	533
DpnI	GATC	3 cut(s)	22, 119, 229
DpnII	GATC	3 cut(s)	20, 117, 227
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	5 cut(s)	190, 262, 490, 523, 535
EagI	CGGCCG	4 cut(s)	190, 262, 490, 535
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	327, 360
EclXI	CGGCCG	4 cut(s)	190, 262, 490, 535
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	4 cut(s)	190, 262, 490, 535
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	153, 238
FaiI	YATR	6 cut(s)	71, 300, 330, 366, 384, 564
FaqI	GGGAC	1 cut(s)	464
FauI	CCCGC	2 cut(s)	239, 464
FblI	GTMKAC	1 cut(s)	207
GlaI	GCGC	4 cut(s)	49, 51, 601, 603
HaeIII	GGCC	9 cut(s)	153, 158, 192, 264, 288, 318, 492, 525, 537
HapII	CCGG	4 cut(s)	27, 77, 320, 538
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	4 cut(s)	50, 52, 602, 604
Hin1I	GRCGYC	2 cut(s)	210, 544
Hin6I	GCGC	4 cut(s)	48, 50, 600, 602
HinP1I	GCGC	4 cut(s)	48, 50, 600, 602
HincII	GTYRAC	2 cut(s)	208, 217
HindII	GTYRAC	2 cut(s)	208, 217
HpaII	CCGG	4 cut(s)	27, 77, 320, 538
HphI	GGTGA	3 cut(s)	214, 368, 440
Hpy166II	GTNNAC	3 cut(s)	106, 208, 217
Hpy188I	TCNGA	2 cut(s)	127, 148
Hpy8I	GTNNAC	3 cut(s)	106, 208, 217
Hpy99I	CGWCG	7 cut(s)	131, 164, 176, 209, 212, 215, 549
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	5 cut(s)	34, 362, 422, 455, 521
HpyCH4IV	ACGT	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	210, 544
HspAI	GCGC	4 cut(s)	48, 50, 600, 602
KspI	CCGCGG	2 cut(s)	268, 292
Kzo9I	GATC	3 cut(s)	20, 117, 227
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	356, 455
MalI	GATC	3 cut(s)	22, 119, 229
MboI	GATC	3 cut(s)	20, 117, 227
MboII	GAAGA	2 cut(s)	91, 197
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	2 cut(s)	432, 565
MmeI	TCCRAC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	267, 291
MspI	CCGG	4 cut(s)	27, 77, 320, 538
MspR9I	CCNGG	5 cut(s)	77, 155, 240, 320, 539
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	2 cut(s)	155, 240
MvnI	CGCG	5 cut(s)	50, 267, 291, 375, 602
NciI	CCSGG	3 cut(s)	77, 320, 539
NdeII	GATC	3 cut(s)	20, 117, 227
NmeAIII	GCCGAG	2 cut(s)	34, 278
NmuCI	GTSAC	1 cut(s)	356
NotI	GCGGCCGC	1 cut(s)	262
PauI	GCGCGC	2 cut(s)	48, 600
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 180
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	153, 238
PspGI	CCWGG	2 cut(s)	153, 238
PspPI	GGNCC	3 cut(s)	94, 151, 317
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	212
PteI	GCGCGC	2 cut(s)	48, 600
SacII	CCGCGG	2 cut(s)	268, 292
SalI	GTCGAC	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	20, 117, 227
Sau96I	GGNCC	3 cut(s)	94, 151, 317
ScrFI	CCNGG	5 cut(s)	77, 155, 240, 320, 539
SetI	ASST	7 cut(s)	99, 213, 222, 308, 382, 505, 511
SfcI	CTRYAG	1 cut(s)	418
Sfr303I	CCGCGG	2 cut(s)	268, 292
SgrBI	CCGCGG	2 cut(s)	268, 292
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	432, 565
StyD4I	CCNGG	5 cut(s)	75, 153, 238, 318, 537
TaaI	ACNGT	5 cut(s)	34, 362, 422, 455, 521
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	5 cut(s)	116, 162, 174, 207, 246
TasI	AATT	2 cut(s)	432, 565
TauI	GCSGC	9 cut(s)	90, 195, 264, 267, 270, 273, 291, 492, 537
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.