Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Forward (+)

41593109 .. 41594112

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G503000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGACACCGCGAGATCCACGGGCACAGTCAAGTGGTTCAGCGCGCAGAAGGGGTTCGGCTTCATCGCCCCCGACGACGGCACCGAAGATCTCTTCGTCCACCAGACCTCGATCCAATCCGACGGCTTCCGGACCCTCTCGGAGGGCCAGCCCGTCGACTTCCTCGTCGAATTAGGCGAAGACGGACGCACCAAAGCCGTCGACGTCGTCGCCTCTATCGCCCGATCCCGAGGTCCCGGCTTTGACCATGGCCGTGGACGCGGCCGTTTTGGCGGGAGGGGTGGCGGTTATGGCGGGAGAGGGGTAGGCAATGGAGGCGGCGGGCGTGGTGGTTATGGAAGGTTCGGTGGAGGGTATGATGTCGGGAGAGGCGGCGGGAGGGGTGGCGGTTATAGTGGTGGTTACGGTGGTGGTCGCGGCGGTGGCGAGTGCTACAATTGCGGCGGATTTGGGCATTTGGCTAGGGACTGTATTCAGGACGGCGGCGGCGGTGGCGGTGTTGGAAGATTTGGTGGCGGTGGTCGAGGATACGGTAGCCGTGGAGGCGGTGGTGGCCGTGGGTGTTATAATTGCGGAGGGGAAGGGCATTTGGCAAGGGAATGTCCTAATGACCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

208

Amino Acids

20.6

Weight (kDa)

8.98

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	2 cut(s)	159, 204
AccII	CGCG	4 cut(s)	14, 47, 264, 420
AccIII	TCCGGA	1 cut(s)	132
AclWI	GGATC	3 cut(s)	12, 109, 222
AcoI	YGGCCR	3 cut(s)	253, 265, 556
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	80, 145
AlwI	GGATC	3 cut(s)	12, 109, 222
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	4 cut(s)	148, 253, 265, 556
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	47, 49
AspS9I	GGNCC	3 cut(s)	135, 148, 236
AsuC2I	CCSGG	1 cut(s)	240
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	135, 236
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	189
BceAI	ACGGC	8 cut(s)	97, 142, 185, 240, 252, 499, 525, 543
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	524
BglI	GCCNNNNNGGC	2 cut(s)	273, 546
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	7 cut(s)	265, 322, 376, 421, 445, 487, 490
BlsI	GCNGC	7 cut(s)	266, 323, 377, 422, 446, 488, 491
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	135, 236
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	3 cut(s)	135, 148, 236
BmiI	GGNNCC	3 cut(s)	85, 137, 238
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	6 cut(s)	21, 232, 250, 256, 541, 559
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 145
Bse3DI	GCAATG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	132
BseDI	CCNNGG	6 cut(s)	21, 232, 250, 256, 541, 559
BseLI	CCNNNNNNNGG	2 cut(s)	80, 145
BseMI	GCAATG	1 cut(s)	319
BsePI	GCGCGC	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	265
Bsh1236I	CGCG	4 cut(s)	14, 47, 264, 420
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	150, 255, 267, 558
BshNI	GGYRCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	133, 240
BslFI	GGGAC	2 cut(s)	222, 482
BslI	CCNNNNNNNGG	2 cut(s)	80, 145
BsmFI	GGGAC	2 cut(s)	222, 482
BsnI	GGCC	4 cut(s)	150, 255, 267, 558
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	17, 91, 114, 227
Bsp19I	CCATGG	1 cut(s)	250
BspANI	GGCC	4 cut(s)	150, 255, 267, 558
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	4 cut(s)	14, 47, 264, 420
BspLI	GGNNCC	3 cut(s)	85, 137, 238
BspPI	GGATC	3 cut(s)	12, 109, 222
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	6 cut(s)	21, 232, 250, 256, 541, 559
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	4 cut(s)	17, 91, 114, 227
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	4 cut(s)	31, 410, 473, 536
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	47, 152, 326
BstDSI	CCRYGG	5 cut(s)	21, 250, 256, 541, 559
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstFNI	CGCG	4 cut(s)	14, 47, 264, 420
BstHHI	GCGC	2 cut(s)	47, 49
BstKTI	GATC	4 cut(s)	20, 94, 117, 230
BstMBI	GATC	4 cut(s)	17, 91, 114, 227
BstMCI	CGRYCG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	4 cut(s)	14, 47, 264, 420
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	17, 91
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	17, 91
BstZI	CGGCCG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	150, 255, 267, 558
BtgI	CCRYGG	5 cut(s)	21, 250, 256, 541, 559
BtgZI	GCGATG	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	47, 152, 326
CfoI	GCGC	2 cut(s)	47, 49
Cfr13I	GGNCC	3 cut(s)	135, 148, 236
CseI	GACGC	2 cut(s)	198, 270
CviAII	CATG	1 cut(s)	251
DpnI	GATC	4 cut(s)	19, 93, 116, 229
DpnII	GATC	4 cut(s)	17, 91, 114, 227
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	3 cut(s)	253, 265, 556
EagI	CGGCCG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	20, 462
EclXI	CGGCCG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	135, 236
Eco52I	CGGCCG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	254
FaiI	YATR	6 cut(s)	252, 294, 339, 360, 396, 570
FaqI	GGGAC	2 cut(s)	222, 482
FatI	CATG	1 cut(s)	250
FauI	CCCGC	4 cut(s)	269, 290, 317, 371
FblI	GTMKAC	2 cut(s)	159, 204
Fnu4HI	GCNGC	7 cut(s)	265, 322, 376, 421, 445, 487, 490
Fsp4HI	GCNGC	7 cut(s)	265, 322, 376, 421, 445, 487, 490
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	2 cut(s)	46, 48
GluI	GCNGC	7 cut(s)	265, 322, 376, 421, 445, 487, 490
HaeIII	GGCC	4 cut(s)	150, 255, 267, 558
HapII	CCGG	2 cut(s)	133, 240
HgaI	GACGC	2 cut(s)	198, 270
HhaI	GCGC	2 cut(s)	47, 49
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	45, 47
HinP1I	GCGC	2 cut(s)	45, 47
HincII	GTYRAC	2 cut(s)	160, 205
HindII	GTYRAC	2 cut(s)	160, 205
HpaII	CCGG	2 cut(s)	133, 240
Hpy166II	GTNNAC	4 cut(s)	103, 160, 205, 260
Hpy188I	TCNGA	2 cut(s)	124, 145
Hpy188III	TCNNGA	4 cut(s)	133, 231, 367, 479
Hpy8I	GTNNAC	4 cut(s)	103, 160, 205, 260
Hpy99I	CGWCG	9 cut(s)	80, 83, 128, 161, 173, 206, 209, 212, 215
HpyAV	CCTTC	3 cut(s)	46, 336, 578
HpyCH4III	ACNGT	4 cut(s)	31, 410, 473, 536
HpyCH4IV	ACGT	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	2 cut(s)	45, 47
Kpn2I	TCCGGA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	17, 91, 114, 227
LpnPI	CCDG	5 cut(s)	119, 146, 164, 253, 464
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	19, 93, 116, 229
MboI	GATC	4 cut(s)	17, 91, 114, 227
MboII	GAAGA	4 cut(s)	88, 101, 194, 519
MfeI	CAATTG	1 cut(s)	439
MflI	RGATCY	2 cut(s)	17, 91
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	173, 439, 571
MmeI	TCCRAC	2 cut(s)	147, 484
MroI	TCCGGA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	2 cut(s)	133, 240
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	439
MvnI	CGCG	4 cut(s)	14, 47, 264, 420
NciI	CCSGG	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	17, 91, 114, 227
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	3 cut(s)	85, 137, 238
PauI	GCGCGC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 84, 165, 177
PdmI	GAANNNNTTC	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	266, 323, 377, 422, 446, 488, 491
PpuMI	RGGWCCY	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	85, 137, 238
PspPI	GGNCC	3 cut(s)	135, 148, 236
PspPPI	RGGWCCY	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	17, 91
PsyI	GACNNNGTC	1 cut(s)	209
PteI	GCGCGC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	255
SalI	GTCGAC	2 cut(s)	158, 203
SatI	GCNGC	7 cut(s)	265, 322, 376, 421, 445, 487, 490
Sau3AI	GATC	4 cut(s)	17, 91, 114, 227
Sau96I	GGNCC	3 cut(s)	135, 148, 236
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	113, 210, 238, 347
SgrDI	CGTCGACG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	135, 236
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	173, 439, 571
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	31, 410, 473, 536
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	113, 159, 171, 204, 526
TasI	AATT	3 cut(s)	173, 439, 571
TauI	GCSGC	7 cut(s)	267, 324, 378, 423, 447, 489, 492
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	135, 236
XagI	CCTNNNNNAGG	1 cut(s)	143
XmiI	GTMKAC	2 cut(s)	159, 204
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.