Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

18942617 .. 18943213

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1089000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGACGCCGCGAAATCCACGGGAACGGTCAAGTGGTTCAGCGCGCATAAGGGGTTCGGCTTCATAGCTCCCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGACCTCGATCCAATGCGACGGCTTCCGGACCCTCTCGGAGGGCCAGACCGTCGAGTTCCTCGTAGATTTCAGTGAGGACGGACGCACCAAAGCCATCGACGTCGTTGGAAATATCACTCGATCCCGCCGTCCCGGCTTTGACCGCTACCGCGGTCGTGGTGGATATGGAGGGAGAGGCGGCGGAGGCGGTTATGGAAGGTTTGGTGGACACCCTGGAGGGTATAATCTAGCGAGAGGCGGCGGAAGGCGTGGCGGTTACGGCAGAGGTCGTGGGGGCGGCGGCGGTGAGTGCTACAACTGCGGTGGTATTGGACATTTGGCAAGGGACTGTACTCAGAGTGGTGGTGTGACTGGCGTCCCGAAATTTGGCGGCGGTGGACGCGGTGGTGGGGGATATGGTGGTAGAGGCGGCGGCAGGCGTGGTGGTGAATGTTATAATTGTGGAGAGGAAGGGCATTTGGCAAGGGAATGTCCCAATGATCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

199

Amino Acids

20.31

Weight (kDa)

9.17

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	8 - 71	6.2e-24	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	132 - 148	4.3e-08	Zinc knuckle
zf-CCHC	PF00098	179 - 195	1.2e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	4 cut(s)	14, 47, 258, 489
AccIII	TCCGGA	1 cut(s)	132
AclWI	GGATC	3 cut(s)	99, 109, 222
AcsI	RAATTY	1 cut(s)	470
AcyI	GRCGYC	3 cut(s)	9, 207, 462
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	3 cut(s)	80, 145, 473
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	3 cut(s)	99, 109, 222
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	47, 49
AspS9I	GGNCC	2 cut(s)	135, 148
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	404, 545
AvaII	GGWCC	1 cut(s)	135
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	4 cut(s)	97, 142, 219, 382
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	9 cut(s)	12, 85, 286, 346, 385, 388, 478, 517, 520
BlsI	GCNGC	9 cut(s)	13, 86, 287, 347, 386, 389, 479, 518, 521
Bme1390I	CCNGG	2 cut(s)	240, 321
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	135, 148
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	240, 321
BoxI	GACNNNNGTC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	3 cut(s)	9, 207, 462
BsaJI	CCNNGG	3 cut(s)	21, 256, 319
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 145, 473
Bse1I	ACTGG	1 cut(s)	463
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	21, 256, 319
BseLI	CCNNNNNNNGG	3 cut(s)	80, 145, 473
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	463
BsePI	GCGCGC	1 cut(s)	45
Bsh1236I	CGCG	4 cut(s)	14, 47, 258, 489
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	133, 240
BslFI	GGGAC	4 cut(s)	222, 446, 449, 564
BslI	CCNNNNNNNGG	3 cut(s)	80, 145, 473
BsmFI	GGGAC	4 cut(s)	222, 446, 449, 564
BsnI	GGCC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	91, 114, 227, 586
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	454
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	4 cut(s)	14, 47, 258, 489
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	99, 109, 222
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	21, 256, 319
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	4 cut(s)	91, 114, 227, 586
BssNI	GRCGYC	3 cut(s)	9, 207, 462
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	31, 157, 437
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	3 cut(s)	9, 207, 462
BstC8I	GCNNGC	2 cut(s)	47, 524
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	2 cut(s)	21, 256
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstFNI	CGCG	4 cut(s)	14, 47, 258, 489
BstHHI	GCGC	2 cut(s)	47, 49
BstKTI	GATC	4 cut(s)	94, 117, 230, 589
BstMBI	GATC	4 cut(s)	91, 114, 227, 586
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 240, 249, 291, 366, 396, 405, 486
BstNI	CCWGG	1 cut(s)	321
BstPAI	GACNNNNGTC	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	238, 319
BstUI	CGCG	4 cut(s)	14, 47, 258, 489
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	21, 256
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	47, 524
CfoI	GCGC	2 cut(s)	47, 49
Cfr13I	GGNCC	2 cut(s)	135, 148
Cfr42I	CCGCGG	1 cut(s)	259
CseI	GACGC	4 cut(s)	17, 198, 451, 495
Csp6I	GTAC	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviJI	RGCY	7 cut(s)	5, 63, 71, 129, 150, 200, 243
CviKI_1	RGCY	7 cut(s)	5, 63, 71, 129, 150, 200, 243
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	4 cut(s)	93, 116, 229, 588
DpnII	GATC	4 cut(s)	91, 114, 227, 586
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	303, 363
Eco47I	GGWCC	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	319
FaiI	YATR	7 cut(s)	51, 68, 273, 300, 330, 504, 543
FaqI	GGGAC	4 cut(s)	222, 446, 449, 564
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	9 cut(s)	12, 85, 286, 346, 385, 388, 478, 517, 520
Fsp4HI	GCNGC	9 cut(s)	12, 85, 286, 346, 385, 388, 478, 517, 520
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	2 cut(s)	46, 48
GluI	GCNGC	9 cut(s)	12, 85, 286, 346, 385, 388, 478, 517, 520
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	133, 240
HgaI	GACGC	4 cut(s)	17, 198, 451, 495
HhaI	GCGC	2 cut(s)	47, 49
Hin1I	GRCGYC	3 cut(s)	9, 207, 462
Hin6I	GCGC	2 cut(s)	45, 47
HinP1I	GCGC	2 cut(s)	45, 47
HpaII	CCGG	2 cut(s)	133, 240
HphI	GGTGA	2 cut(s)	404, 545
Hpy166II	GTNNAC	3 cut(s)	103, 314, 485
Hpy188I	TCNGA	3 cut(s)	145, 444, 591
Hpy188III	TCNNGA	3 cut(s)	74, 133, 466
Hpy8I	GTNNAC	3 cut(s)	103, 314, 485
Hpy99I	CGWCG	6 cut(s)	80, 83, 128, 161, 209, 212
HpyAV	CCTTC	3 cut(s)	297, 345, 551
HpyCH4III	ACNGT	3 cut(s)	31, 157, 437
HpyCH4IV	ACGT	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 240, 249, 291, 366, 396, 405, 486
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	3 cut(s)	9, 207, 462
HspAI	GCGC	2 cut(s)	45, 47
Kpn2I	TCCGGA	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	586
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	91, 114, 227, 586
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	119, 146, 164, 253, 306, 333, 444, 508
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	362, 454
MalI	GATC	4 cut(s)	93, 116, 229, 588
MboI	GATC	4 cut(s)	91, 114, 227, 586
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	2 cut(s)	470, 544
MmeI	TCCRAC	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	133, 240
MspR9I	CCNGG	2 cut(s)	240, 321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	4 cut(s)	14, 47, 258, 489
MwoI	GCNNNNNNNGC	8 cut(s)	11, 240, 249, 291, 366, 396, 405, 486
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	91, 114, 227, 586
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	454
PauI	GCGCGC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 165, 232
PkrI	GCNGC	9 cut(s)	13, 86, 287, 347, 386, 389, 479, 518, 521
PshAI	GACNNNNGTC	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	135, 148
PsuI	RGATCY	1 cut(s)	91
PteI	GCGCGC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SacII	CCGCGG	1 cut(s)	259
SatI	GCNGC	9 cut(s)	12, 85, 286, 346, 385, 388, 478, 517, 520
Sau3AI	GATC	4 cut(s)	91, 114, 227, 586
Sau96I	GGNCC	2 cut(s)	135, 148
ScrFI	CCNGG	2 cut(s)	240, 321
SetI	ASST	5 cut(s)	73, 113, 210, 308, 376
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	470, 544
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	238, 319
TaaI	ACNGT	3 cut(s)	31, 157, 437
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	113, 159, 204, 226
TasI	AATT	2 cut(s)	470, 544
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	9 cut(s)	14, 87, 288, 348, 387, 390, 480, 519, 522
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	470
XspI	CTAG	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.