Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Forward (+)

12172282 .. 12172758

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1153300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGAGAAGAGATCGACCGAGAAGGTGAGGTGGTTCAACGACGTCAAGGGCTACGGCTTCATCACCCCCGACGACGGAGGCGAGGACCTCTTCGTCCACCAGTCCTCGATCAGATCCAACGATTTCCACACCATCATGGAGGGCGAGTCCGTCGAGTTCTTTATAGACTTCGGTGATGACAGCAAGACCAAAGCAGTCGATGTGACAGGACCTAACGGCGCGCCCGCGCCGTTGGTCGATAACAAGAAGGAGACCTTCGGTTGCTCTAGGGGCCGCGGTGGCGGTGATGGCGATTCTGGATTTGGAGGTGGATGGAGAGGCGATGATAGGAAGAATGAAGGTGGTGCCGGTGGCAATGGGTGTTATAGTTGCAGCAAGCCTGGGCACATGGCTAGAGATTGCCTTCAGGGCAGTGGAGGTGGTGATGGAGGAAGAGAGGGCGGGACTCGCAAAGAGGGAGTTGCAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

159

Amino Acids

16.61

Weight (kDa)

5.1

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	9 - 71	4.2e-21	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	121 - 135	4.9e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	3 cut(s)	224, 230, 279
AciI	CCGC	6 cut(s)	5, 228, 277, 279, 285, 444
AclWI	GGATC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	375
AscI	GGCGCGCC	1 cut(s)	222
AspLEI	GCGC	3 cut(s)	224, 226, 232
AspS9I	GGNCC	3 cut(s)	88, 212, 274
AsuHPI	GGTGA	5 cut(s)	40, 58, 188, 299, 437
AvaII	GGWCC	2 cut(s)	88, 212
BaeGI	GKGCMC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	4 cut(s)	143, 284, 309, 422
BceAI	ACGGC	3 cut(s)	73, 217, 235
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	270, 396
BglI	GCCNNNNNGGC	2 cut(s)	282, 411
BisI	GCNGC	2 cut(s)	277, 376
BlsI	GCNGC	2 cut(s)	278, 377
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	88, 212
BmgT120I	GGNCC	3 cut(s)	88, 212, 274
BmiI	GGNNCC	2 cut(s)	275, 349
BmrFI	CCNGG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	277, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	277, 383
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	103
BsePI	GCGCGC	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	3 cut(s)	224, 230, 279
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	14, 111, 116
BspACI	CCGC	6 cut(s)	5, 228, 277, 279, 285, 444
BspANI	GGCC	1 cut(s)	276
BspFNI	CGCG	3 cut(s)	224, 230, 279
BspLI	GGNNCC	2 cut(s)	275, 349
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	277, 383
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	3 cut(s)	14, 111, 116
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	3 cut(s)	5, 98, 430
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	224, 228, 380
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	320
BstFNI	CGCG	3 cut(s)	224, 230, 279
BstHHI	GCGC	3 cut(s)	224, 226, 232
BstKTI	GATC	3 cut(s)	17, 114, 119
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	14, 111, 116
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 282, 291, 411, 450
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	3 cut(s)	224, 230, 279
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	224, 228, 380
CfoI	GCGC	3 cut(s)	224, 226, 232
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	88, 212, 274
Cfr42I	CCGCGG	1 cut(s)	280
CviAII	CATG	2 cut(s)	139, 391
CviJI	RGCY	5 cut(s)	54, 60, 276, 382, 395
CviKI_1	RGCY	5 cut(s)	54, 60, 276, 382, 395
DpnI	GATC	3 cut(s)	16, 113, 118
DpnII	GATC	3 cut(s)	14, 111, 116
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	3 cut(s)	5, 98, 430
EarI	CTCTTC	3 cut(s)	5, 98, 430
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	88, 212
Eco57I	CTGAAG	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	88, 212
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	142, 394
FaiI	YATR	4 cut(s)	140, 167, 369, 392
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	2 cut(s)	138, 390
FauI	CCCGC	2 cut(s)	235, 437
Fnu4HI	GCNGC	2 cut(s)	277, 376
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	277, 376
FspBI	CTAG	2 cut(s)	270, 396
GlaI	GCGC	3 cut(s)	223, 225, 231
GluI	GCNGC	2 cut(s)	277, 376
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	3 cut(s)	224, 226, 232
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	142, 394
Hin6I	GCGC	3 cut(s)	222, 224, 230
HinP1I	GCGC	3 cut(s)	222, 224, 230
HinfI	GANTC	3 cut(s)	149, 296, 448
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	5 cut(s)	40, 58, 188, 299, 437
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	47, 77, 80, 158
HpyAV	CCTTC	5 cut(s)	19, 244, 268, 335, 416
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	375, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 282, 291, 411, 450
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	142, 394
HspAI	GCGC	3 cut(s)	222, 224, 230
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	14, 111, 116
LpnPI	CCDG	7 cut(s)	116, 195, 285, 364, 369, 395, 396
Lsp1109I	GCAGC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	270, 396
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	16, 113, 118
MboI	GATC	3 cut(s)	14, 111, 116
MboII	GAAGA	4 cut(s)	22, 85, 346, 447
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	158, 442
MmeI	TCCRAC	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	3 cut(s)	224, 230, 279
MwoI	GCNNNNNNNGC	5 cut(s)	273, 282, 291, 411, 450
NdeII	GATC	3 cut(s)	14, 111, 116
NlaIII	CATG	2 cut(s)	142, 394
NlaIV	GGNNCC	2 cut(s)	275, 349
NmuCI	GTSAC	1 cut(s)	205
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	278, 377
PleI	GAGTC	2 cut(s)	157, 442
PpsI	GAGTC	2 cut(s)	157, 442
PpuMI	RGGWCCY	2 cut(s)	88, 212
Psp5II	RGGWCCY	2 cut(s)	88, 212
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	275, 349
PspPI	GGNCC	3 cut(s)	88, 212, 274
PspPPI	RGGWCCY	2 cut(s)	88, 212
PsuI	RGATCY	1 cut(s)	116
PteI	GCGCGC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	2 cut(s)	277, 376
Sau3AI	GATC	3 cut(s)	14, 111, 116
Sau96I	GGNCC	3 cut(s)	88, 212, 274
SchI	GAGTC	2 cut(s)	158, 442
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	9 cut(s)	30, 35, 48, 93, 217, 260, 313, 346, 424
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	2 cut(s)	88, 212
SmiMI	CAYNNNNRTG	1 cut(s)	137
SsiI	CCGC	6 cut(s)	5, 228, 277, 279, 285, 444
SspMI	CTAG	2 cut(s)	270, 396
StyD4I	CCNGG	1 cut(s)	382
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	5 cut(s)	17, 110, 156, 201, 240
TaqII	GACCGA	1 cut(s)	35
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	52, 354
TspGWI	ACGGA	2 cut(s)	93, 142
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	88, 212
XspI	CTAG	2 cut(s)	270, 396
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.