Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

7763528 .. 7765276

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGATGGAAGATCAATCGGCGGCGAGATCTATCGGAAAAGTTAGTTGGTTTAGCGATGGAAAAGGCTACGGTTTCATTACTCCCGATGATGGCGGCGAAGAGCTTTTTGTTCATCAATCCTCAATTGTCTCCGATGGATTCCGTAGCTTGACTCTTGGTGAATCGGTTGAATACGAAATCGCGCTTGGAAGCGACGGAAAGACTAAGGCCATTGAAGTTACTGCTCCCGGCGGCGGTTCACTTAATAAGAAGGAAAACAGCTCCCGTGGATCCGGAGGTAATTGTTTTAATTGCGGTGAGGTTGGTCATATGGCTAAGGATTGTGACGGTGGAAGTGGTGGGAAAAGCTTTGGAGGTGGTGGTGGTCGTAGATCTGGCGGCGAAGGTGAATGTTACATGTGTGGTGATGTGGGACACTTCGCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGCGGCGGAGGAGGAGGAGGTGGTCGTCCGTGTTACAGTTGCGGTGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGTGGAAACAGATACGGAGGAGGTGGTGGTCGTGGATCTGGCGGTGATGGATGCTACATGTGTGGTGGTGTGGGACATTTCGCTAGGGATTGTAGGCAAAACGGCGGTGGAAACGTTGGAGGTGGTGGAAGCACTTGTTATACCTGTGGCGGAGTTGGCCACATTGCGAAAGTTTGCACCAGCAAGATACCTTCTGGTGGTGGTGGTGGTGGTCGTGCTTGTTACGAATGTGGAGGAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGGAGGTGGCGGTGGCAGTAACAAGTGCTTCATCTGCGGCAAGGAAGGTCACTTTGCGAGGGAATGTACTTCGGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

301

Amino Acids

29.56

Weight (kDa)

7.41

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	13 - 76	3.4e-22	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	95 - 110	4.1e-07	Zinc knuckle
zf-CCHC	PF00098	161 - 177	1.3e-06	Zinc knuckle
zf-CCHC	PF00098	252 - 268	3.9e-06	Zinc knuckle
zf-CCHC	PF00098	282 - 299	4.2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	275
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	3 cut(s)	267, 280, 583
AcoI	YGGCCR	2 cut(s)	697, 781
AfaI	GTAC	1 cut(s)	892
AfiI	CCNNNNNNNGG	3 cut(s)	92, 236, 737
AflIII	ACRYGT	2 cut(s)	399, 597
AgsI	TTSAA	2 cut(s)	173, 218
AjuI	GAANNNNNNNTTGG	4 cut(s)	31, 63, 171, 203
AluBI	AGCT	4 cut(s)	106, 150, 264, 351
AluI	AGCT	4 cut(s)	106, 150, 264, 351
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	3 cut(s)	267, 280, 583
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	3 cut(s)	210, 697, 781
ApeKI	GCWGC	1 cut(s)	822
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	6 cut(s)	173, 311, 401, 419, 512, 596
BalI	TGGCCA	2 cut(s)	699, 783
BamHI	GGATCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	834
BccI	CCATC	4 cut(s)	53, 86, 131, 581
BceAI	ACGGC	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	426, 624
BglII	AGATCT	2 cut(s)	29, 374
BisI	GCNGC	7 cut(s)	24, 97, 235, 382, 460, 823, 862
BlsI	GCNGC	7 cut(s)	25, 98, 236, 383, 461, 824, 863
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	581
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 236, 737
Bse1I	ACTGG	1 cut(s)	784
Bse3DI	GCAATG	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	3 cut(s)	92, 236, 737
BseMI	GCAATG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	4 cut(s)	480, 483, 486, 573
BseXI	GCAGC	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	212, 699, 783
BsiSI	CCGG	2 cut(s)	231, 276
BslFI	GGGAC	2 cut(s)	429, 627
BslI	CCNNNNNNNGG	3 cut(s)	92, 236, 737
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	429, 627
BsnI	GGCC	3 cut(s)	212, 699, 783
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
BspANI	GGCC	3 cut(s)	212, 699, 783
BspEI	TCCGGA	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	267, 280, 583
BspQI	GCTCTTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
BssSI	CACGAG	1 cut(s)	792
Bst2BI	CACGAG	1 cut(s)	792
Bst4CI	ACNGT	4 cut(s)	74, 332, 494, 800
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	207, 318
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	6 cut(s)	16, 32, 275, 377, 578, 805
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	696, 831, 858
BstNSI	RCATGY	2 cut(s)	403, 601
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	834
BstX2I	RGATCY	4 cut(s)	29, 272, 374, 575
BstYI	RGATCY	4 cut(s)	29, 272, 374, 575
BsuRI	GGCC	3 cut(s)	212, 699, 783
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	2 cut(s)	20, 72
BtsCI	GGATG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	891
CviAII	CATG	2 cut(s)	400, 598
CviQI	GTAC	1 cut(s)	891
DdeI	CTNAG	2 cut(s)	207, 318
DpnI	GATC	6 cut(s)	15, 31, 274, 376, 577, 804
DpnII	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
EaeI	YGGCCR	2 cut(s)	697, 781
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	2 cut(s)	477, 705
FaeI	CATG	2 cut(s)	403, 601
FaiI	YATR	5 cut(s)	312, 314, 401, 599, 681
FaqI	GGGAC	2 cut(s)	429, 627
FatI	CATG	2 cut(s)	399, 597
FauNDI	CATATG	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	24, 97, 235, 382, 460, 823, 862
FokI	GGATG	1 cut(s)	603
Fsp4HI	GCNGC	7 cut(s)	24, 97, 235, 382, 460, 823, 862
FspBI	CTAG	2 cut(s)	426, 624
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	7 cut(s)	24, 97, 235, 382, 460, 823, 862
HaeIII	GGCC	3 cut(s)	212, 699, 783
HapII	CCGG	2 cut(s)	231, 276
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	403, 601
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	3 cut(s)	141, 154, 164
HpaII	CCGG	2 cut(s)	231, 276
HphI	GGTGA	6 cut(s)	173, 311, 401, 419, 512, 596
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	38, 136, 807
Hpy188III	TCNNGA	3 cut(s)	86, 276, 794
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	247, 380, 741, 863
HpyCH4III	ACNGT	4 cut(s)	74, 332, 494, 800
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	1 cut(s)	717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	696, 831, 858
HpyF3I	CTNAG	2 cut(s)	207, 318
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	403, 601
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	232, 269
LpnPI	CCDG	9 cut(s)	244, 289, 363, 525, 564, 697, 720, 733, 765
Lsp1109I	GCAGC	1 cut(s)	834
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	2 cut(s)	426, 624
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	8 cut(s)	220, 326, 395, 488, 761, 794, 842, 872
MalI	GATC	6 cut(s)	15, 31, 274, 376, 577, 804
MboI	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
MboII	GAAGA	2 cut(s)	23, 113
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	4 cut(s)	29, 272, 374, 575
MlsI	TGGCCA	2 cut(s)	699, 783
MluCI	AATT	3 cut(s)	126, 283, 292
MluNI	TGGCCA	2 cut(s)	699, 783
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	637
Mox20I	TGGCCA	2 cut(s)	699, 783
MroI	TCCGGA	1 cut(s)	275
MscI	TGGCCA	2 cut(s)	699, 783
MseI	TTAA	3 cut(s)	246, 291, 904
Msp20I	TGGCCA	2 cut(s)	699, 783
MspA1I	CMGCKG	2 cut(s)	459, 825
MspI	CCGG	2 cut(s)	231, 276
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	696, 831, 858
NciI	CCSGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
NlaIII	CATG	2 cut(s)	403, 601
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	3 cut(s)	326, 794, 872
NspI	RCATGY	2 cut(s)	403, 601
PciI	ACATGT	2 cut(s)	399, 597
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	141, 164
PkrI	GCNGC	7 cut(s)	25, 98, 236, 383, 461, 824, 863
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	2 cut(s)	399, 597
Psp1406I	AACGTT	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	274
PsuI	RGATCY	4 cut(s)	29, 272, 374, 575
RsaI	GTAC	1 cut(s)	892
RsaNI	GTAC	1 cut(s)	891
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	246, 291, 904
SatI	GCNGC	7 cut(s)	24, 97, 235, 382, 460, 823, 862
Sau3AI	GATC	6 cut(s)	13, 29, 272, 374, 575, 802
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	581
Sse9I	AATT	3 cut(s)	126, 283, 292
SspMI	CTAG	2 cut(s)	426, 624
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	74, 332, 494, 800
TaiI	ACGT	1 cut(s)	657
TasI	AATT	3 cut(s)	126, 283, 292
TatI	WGTACW	1 cut(s)	890
TauI	GCSGC	6 cut(s)	26, 99, 237, 384, 462, 864
TfiI	GAWTC	2 cut(s)	141, 164
Tru1I	TTAA	3 cut(s)	246, 291, 904
Tru9I	TTAA	3 cut(s)	246, 291, 904
TseFI	GTSAC	3 cut(s)	326, 794, 872
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	3 cut(s)	326, 794, 872
TspDTI	ATGAA	3 cut(s)	67, 104, 844
TspGWI	ACGGA	4 cut(s)	134, 213, 474, 570
XceI	RCATGY	2 cut(s)	403, 601
XspI	CTAG	2 cut(s)	426, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.