Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Forward (+)

17192810 .. 17193894

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGGAGGAGAGATCGACTGGGAAGGTCCGGTGGTTCAACGACACCAAGGGCTTTGGCTTCATCACCCCCGATATCGAAAGCGAAGATCTGTTCGTTCATCAGTCCTCCATCAGATCCGACGGCTTCCGCAGCGTGGCGGAAGGTGAGTCTGTCGAGTTCCAAATCGCTGTCGGCGAGGACGGCAAGACCAAAGCCATCGACGTCACTGGTCCTAACGGCGCGCCGTTGCAGGGTAACAGGAAGGAGAGCTTCGGCCGCTCCGGTGGTCGCGGTGGCGGTTCTGGATTTGGAGGTGGATGGAGAGGCGGAGATAGGCGGAATGGAGGCGGTGCCGGTGGCGCTTCTTGCTATAACTGCGGCGAGCCCGGCCACATGGCTAGGGATTGCAATCGCGGCGCTGGGGGCGGTGGCGGAGGCGGTAGTGGTGGCGGTTGCTTTTCTTGCGGTGGCTATGGCCACGTGGCGAGGGTCTGCCCTAATGGGACTGGCGGCGGTGTCGGTGGTGGCGGCGGCGGTGGCGGTAACTGCTACAAGTGTGGTGAGTTTGGGCACTTGGCGAGGGACTGTAGTTCTGGTGCCGTCGGCGGCGGCGGCGGCGGCGGTGCTGGTGCTTGTTATAGCTGTGGGGAATATGGGCACATGGCGAGAGATTGCAGCACAGGTGGCCGCGGCGGCGGCGGCGGCGGTCGTGGCCGGGGATATGGATTCAGTGCTGGATCAGGTGGCAATGGTTGTTATAACTGTGGGCAGGCTGGTCATTTTGCTAAGGAGTGCCCTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

263

Amino Acids

25.4

Weight (kDa)

7.89

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AatII	GACGTC	1 cut(s)	207
AccB1I	GGYRCC	2 cut(s)	332, 578
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	4 cut(s)	224, 273, 396, 672
AclWI	GGATC	2 cut(s)	111, 727
AcoI	YGGCCR	5 cut(s)	256, 370, 457, 667, 694
AcvI	CACGTG	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	136, 233
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	2 cut(s)	252, 624
AluI	AGCT	2 cut(s)	252, 624
AlwI	GGATC	2 cut(s)	111, 727
AoxI	GGCC	5 cut(s)	256, 370, 457, 667, 694
ApeKI	GCWGC	2 cut(s)	132, 657
AscI	GGCGCGCC	1 cut(s)	222
AspLEI	GCGC	4 cut(s)	224, 226, 344, 401
AspS9I	GGNCC	2 cut(s)	28, 212
AsuC2I	CCSGG	2 cut(s)	369, 698
AsuHPI	GGTGA	3 cut(s)	58, 158, 554
AvaII	GGWCC	2 cut(s)	28, 212
BaeGI	GKGCMC	3 cut(s)	555, 642, 779
BalI	TGGCCA	1 cut(s)	459
BanI	GGYRCC	2 cut(s)	332, 578
BanII	GRGCYC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	144, 669
BccI	CCATC	3 cut(s)	119, 206, 294
BceAI	ACGGC	5 cut(s)	139, 199, 211, 235, 566
BcnI	CCSGG	2 cut(s)	369, 698
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	568
BfoI	RGCGCY	2 cut(s)	345, 402
BglI	GCCNNNNNGGC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	369, 698
Bme18I	GGWCC	2 cut(s)	28, 212
BmgT120I	GGNCC	2 cut(s)	28, 212
BmiI	GGNNCC	2 cut(s)	334, 580
BmrFI	CCNGG	2 cut(s)	369, 698
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	768
BpuMI	CCSGG	2 cut(s)	369, 698
BsaAI	YACGTR	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	48, 670, 697
BsaWI	WCCGGW	2 cut(s)	30, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 233
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	25, 214, 493
Bse3DI	GCAATG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	48, 670, 697
BseGI	GGATG	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	136, 233
BseMI	GCAATG	1 cut(s)	736
BseNI	ACTGG	3 cut(s)	25, 214, 493
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	3 cut(s)	555, 642, 779
BseX3I	CGGCCG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	144, 669
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	4 cut(s)	224, 273, 396, 672
Bsh1285I	CGRYCG	2 cut(s)	259, 691
BshFI	GGCC	5 cut(s)	258, 372, 459, 669, 696
BshNI	GGYRCC	2 cut(s)	332, 578
BsiEI	CGRYCG	2 cut(s)	259, 691
BsiSI	CCGG	5 cut(s)	31, 264, 336, 369, 697
BslFI	GGGAC	2 cut(s)	499, 578
BslI	CCNNNNNNNGG	2 cut(s)	136, 233
BsmFI	GGGAC	2 cut(s)	499, 578
BsnI	GGCC	5 cut(s)	258, 372, 459, 669, 696
Bsp1286I	GDGCHC	4 cut(s)	369, 555, 642, 779
Bsp143I	GATC	4 cut(s)	14, 88, 116, 719
BspANI	GGCC	5 cut(s)	258, 372, 459, 669, 696
BspFNI	CGCG	4 cut(s)	224, 273, 396, 672
BspLI	GGNNCC	2 cut(s)	334, 580
BspPI	GGATC	2 cut(s)	111, 727
BspT107I	GGYRCC	2 cut(s)	332, 578
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	736
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	3 cut(s)	25, 214, 493
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	48, 670, 697
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	4 cut(s)	14, 88, 116, 719
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	569, 746
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	224, 365, 753
BstDEI	CTNAG	1 cut(s)	768
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	305
BstFNI	CGCG	4 cut(s)	224, 273, 396, 672
BstH2I	RGCGCY	2 cut(s)	345, 402
BstHHI	GCGC	4 cut(s)	224, 226, 344, 401
BstKTI	GATC	4 cut(s)	17, 91, 119, 722
BstMBI	GATC	4 cut(s)	14, 88, 116, 719
BstMCI	CGRYCG	2 cut(s)	259, 691
BstSCI	CCNGG	2 cut(s)	367, 696
BstSFI	CTRYAG	1 cut(s)	568
BstSLI	GKGCMC	3 cut(s)	555, 642, 779
BstUI	CGCG	4 cut(s)	224, 273, 396, 672
BstV1I	GCAGC	2 cut(s)	144, 669
BstX2I	RGATCY	2 cut(s)	88, 116
BstYI	RGATCY	2 cut(s)	88, 116
BstZI	CGGCCG	1 cut(s)	256
BsuRI	GGCC	5 cut(s)	258, 372, 459, 669, 696
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	207, 718
Cac8I	GCNNGC	3 cut(s)	224, 365, 753
CfoI	GCGC	4 cut(s)	224, 226, 344, 401
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	28, 212
Cfr42I	CCGCGG	1 cut(s)	673
CviAII	CATG	2 cut(s)	376, 643
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	4 cut(s)	16, 90, 118, 721
DpnII	GATC	4 cut(s)	14, 88, 116, 719
EaeI	YGGCCR	5 cut(s)	256, 370, 457, 667, 694
EagI	CGGCCG	1 cut(s)	256
EciI	GGCGGA	5 cut(s)	20, 155, 324, 334, 429
EclXI	CGGCCG	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	28, 212
Eco52I	CGGCCG	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	379, 646
FaiI	YATR	8 cut(s)	354, 377, 456, 621, 636, 644, 705, 741
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	499, 578
FatI	CATG	2 cut(s)	375, 642
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	4 cut(s)	223, 225, 343, 400
GsaI	CCCAGC	1 cut(s)	405
HaeII	RGCGCY	2 cut(s)	345, 402
HaeIII	GGCC	5 cut(s)	258, 372, 459, 669, 696
HapII	CCGG	5 cut(s)	31, 264, 336, 369, 697
HhaI	GCGC	4 cut(s)	224, 226, 344, 401
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	379, 646
Hin6I	GCGC	4 cut(s)	222, 224, 342, 399
HinP1I	GCGC	4 cut(s)	222, 224, 342, 399
HinfI	GANTC	2 cut(s)	149, 708
HpaII	CCGG	5 cut(s)	31, 264, 336, 369, 697
HphI	GGTGA	3 cut(s)	58, 158, 554
Hpy188I	TCNGA	2 cut(s)	116, 121
Hpy188III	TCNNGA	1 cut(s)	285
Hpy99I	CGWCG	3 cut(s)	125, 206, 587
HpyAV	CCTTC	3 cut(s)	19, 137, 238
HpyCH4III	ACNGT	2 cut(s)	569, 746
HpyCH4IV	ACGT	2 cut(s)	204, 462
HpyCH4V	TGCA	3 cut(s)	232, 390, 657
HpyF3I	CTNAG	1 cut(s)	768
HpySE526I	ACGT	2 cut(s)	204, 462
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	379, 646
HspAI	GCGC	4 cut(s)	222, 224, 342, 399
KspI	CCGCGG	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	14, 88, 116, 719
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	144, 669
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	204, 462
MaeIII	GTNAC	3 cut(s)	205, 236, 524
MalI	GATC	4 cut(s)	16, 90, 118, 721
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	4 cut(s)	14, 88, 116, 719
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	2 cut(s)	88, 116
MhlI	GDGCHC	4 cut(s)	369, 555, 642, 779
MlsI	TGGCCA	1 cut(s)	459
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	8 cut(s)	118, 172, 287, 299, 320, 410, 462, 555
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	672
MspI	CCGG	5 cut(s)	31, 264, 336, 369, 697
MspR9I	CCNGG	2 cut(s)	369, 698
MvnI	CGCG	4 cut(s)	224, 273, 396, 672
NciI	CCSGG	2 cut(s)	369, 698
NdeII	GATC	4 cut(s)	14, 88, 116, 719
NlaIII	CATG	2 cut(s)	379, 646
NlaIV	GGNNCC	2 cut(s)	334, 580
NmuCI	GTSAC	1 cut(s)	205
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	708
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	463
PmlI	CACGTG	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	741
PspCI	CACGTG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	334, 580
PspPI	GGNCC	2 cut(s)	28, 212
PsuI	RGATCY	2 cut(s)	88, 116
PteI	GCGCGC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	673
Sau3AI	GATC	4 cut(s)	14, 88, 116, 719
Sau96I	GGNCC	2 cut(s)	28, 212
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	369, 698
SduI	GDGCHC	4 cut(s)	369, 555, 642, 779
SetI	ASST	9 cut(s)	30, 148, 207, 254, 298, 465, 626, 667, 727
SfcI	CTRYAG	1 cut(s)	568
Sfr303I	CCGCGG	1 cut(s)	673
SgrBI	CCGCGG	1 cut(s)	673
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	2 cut(s)	28, 212
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	367, 696
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	569, 746
TaiI	ACGT	2 cut(s)	207, 465
TaqI	TCGA	4 cut(s)	17, 78, 156, 201
TfiI	GAWTC	1 cut(s)	708
TscAI	CASTG	2 cut(s)	214, 718
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	132, 657
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	52, 89
TspRI	CASTG	2 cut(s)	214, 718
VpaK11BI	GGWCC	2 cut(s)	28, 212
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.