Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Forward (+)

81213268 .. 81214053

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGAGGAGAGATCGACTGGGGTAGTGAAGTGGTTCAATGACACCAAGGGATTCGGCTTCATCACCCCTGACAACAACACCGAAGATCTGTTCGTCCACCAATCCTCGATCAAATCCGACGGCTTCCGCACCGTCGCCGAGGGCGACGCCGTTGAGTTTCTGATCGCCGTCGGCGAGGACGGCAAGACCAAGGCCGTCGATGTCACTGGTCCGAACGGCGCGCCTCTGCCGGGGAAGGAGAGTTTTGCTCGCTCCGGCGGCCGGGGCGGTGGCGGTCGAGACGCTGCGGGATTCGGCGGTGCGTGGAGAGGTGGAGATCGCCGTAACGGTGGCGGCGGCGGGTGTTATACTTGCGGCGATACTGGTCACATGGCTAGGGATTGCAATCGCGGTGGGAATGGAGGCGGTGGAGGCCGCGGTGGTGGTGATGGATGCTTTACTTGCGGAGGGTATGGACACATGGCAAGGAATTGTCCTAGTGGGAACAGCGGCGGTGGTGGCGGTGGCCGTGGTGGTGAGGGTTGCTACAAGTGTGGCGATTTTGGCCATTTGGCTAGAGACTGTTTCAATGGAGGCTCCGGTGGCGGTGGCGGAGGCGGTGGTGCATGTTATACCTGTGGGGAGGTTGGTCACATGGCTAGGGATTGCACCCGGGGAGGCGCTGGCGGTGGACGCAGTGGCGGTCGGTATGGCTACAGTTCTGGATCCGCCGGCGGCGGCAATGTCTGTTACAACTGTGGGCAGGCTGGGCATTTTGCCAAGGAGTGTCCAAACCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

261

Amino Acids

25.61

Weight (kDa)

7.46

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	1.9e-24	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	115 - 129	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	145 - 161	4.5e-06	Zinc knuckle
zf-CCHC	PF00098	175 - 190	7e-06	Zinc knuckle
zf-CCHC	PF00098	203 - 218	4.3e-08	Zinc knuckle
zf-CCHC	PF00098	242 - 259	2.5e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	224, 393, 420
AclWI	GGATC	2 cut(s)	702, 715
AcoI	YGGCCR	3 cut(s)	262, 508, 547
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	233, 264
AgsI	TTSAA	2 cut(s)	40, 571
AjnI	CCWGG	1 cut(s)	777
Alw26I	GTCTC	2 cut(s)	276, 555
AlwI	GGATC	2 cut(s)	702, 715
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	5 cut(s)	195, 262, 415, 508, 547
ApeKI	GCWGC	1 cut(s)	287
AscI	GGCGCGCC	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	3 cut(s)	224, 226, 665
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	4 cut(s)	234, 266, 655, 656
AsuHPI	GGTGA	3 cut(s)	58, 440, 530
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	707
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	8 cut(s)	137, 139, 155, 182, 199, 235, 309, 495
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	4 cut(s)	234, 266, 655, 656
BcoDI	GTCTC	2 cut(s)	276, 555
BfaI	CTAG	4 cut(s)	378, 480, 558, 642
BfmI	CTRYAG	1 cut(s)	697
BfoI	RGCGCY	1 cut(s)	666
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	9 cut(s)	262, 288, 337, 340, 358, 418, 493, 718, 721
BlsI	GCNGC	9 cut(s)	263, 289, 338, 341, 359, 419, 494, 719, 722
Bme1390I	CCNGG	5 cut(s)	234, 266, 655, 656, 779
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	580, 709
BmrFI	CCNGG	5 cut(s)	234, 266, 655, 656, 779
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	4 cut(s)	234, 266, 655, 656
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 264
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	3 cut(s)	25, 214, 370
Bse3DI	GCAATG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	779
BseGI	GGATG	1 cut(s)	440
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	233, 264
BseMI	GCAATG	1 cut(s)	730
BseNI	ACTGG	3 cut(s)	25, 214, 370
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	749
Bsh1236I	CGCG	3 cut(s)	224, 393, 420
Bsh1285I	CGRYCG	3 cut(s)	265, 280, 688
BshFI	GGCC	5 cut(s)	197, 264, 417, 510, 549
BsiEI	CGRYCG	3 cut(s)	265, 280, 688
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	6 cut(s)	233, 258, 265, 582, 655, 714
BslI	CCNNNNNNNGG	2 cut(s)	233, 264
BsmAI	GTCTC	2 cut(s)	276, 555
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	5 cut(s)	197, 264, 417, 510, 549
BsoBI	CYCGRG	1 cut(s)	654
Bsp143I	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
BspANI	GGCC	5 cut(s)	197, 264, 417, 510, 549
BspFNI	CGCG	3 cut(s)	224, 393, 420
BspLI	GGNNCC	2 cut(s)	580, 709
BspPI	GGATC	2 cut(s)	702, 715
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	25, 214, 370
BssAI	RCCGGY	1 cut(s)	713
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	48, 192, 762
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	5 cut(s)	136, 332, 566, 701, 740
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	5 cut(s)	224, 253, 667, 715, 747
BstDSI	CCRYGG	2 cut(s)	418, 511
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	3 cut(s)	224, 393, 420
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	3 cut(s)	224, 226, 665
BstKTI	GATC	6 cut(s)	17, 91, 114, 168, 322, 710
BstMAI	GTCTC	2 cut(s)	276, 555
BstMBI	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
BstMCI	CGRYCG	3 cut(s)	265, 280, 688
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	5 cut(s)	232, 264, 653, 654, 777
BstSFI	CTRYAG	1 cut(s)	697
BstUI	CGCG	3 cut(s)	224, 393, 420
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	88, 707
BstYI	RGATCY	2 cut(s)	88, 707
BstZI	CGGCCG	1 cut(s)	262
BsuRI	GGCC	5 cut(s)	197, 264, 417, 510, 549
BtgI	CCRYGG	2 cut(s)	418, 511
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	2 cut(s)	207, 685
Cac8I	GCNNGC	5 cut(s)	224, 253, 667, 715, 747
CfoI	GCGC	3 cut(s)	224, 226, 665
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	212
Cfr42I	CCGCGG	1 cut(s)	421
Cfr9I	CCCGGG	1 cut(s)	654
CseI	GACGC	3 cut(s)	158, 293, 684
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	4 cut(s)	373, 463, 609, 637
DpnI	GATC	6 cut(s)	16, 90, 113, 167, 321, 709
DpnII	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
EaeI	YGGCCR	3 cut(s)	262, 508, 547
EagI	CGGCCG	1 cut(s)	262
EciI	GGCGGA	3 cut(s)	20, 609, 700
EclXI	CGGCCG	1 cut(s)	262
Eco130I	CCWWGG	3 cut(s)	48, 192, 762
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	3 cut(s)	48, 192, 762
ErhI	CCWWGG	3 cut(s)	48, 192, 762
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	376, 466, 612, 640
FaiI	YATR	8 cut(s)	351, 374, 456, 464, 610, 615, 638, 693
FatI	CATG	4 cut(s)	372, 462, 608, 636
FauI	CCCGC	2 cut(s)	283, 335
Fnu4HI	GCNGC	9 cut(s)	262, 288, 337, 340, 358, 418, 493, 718, 721
FokI	GGATG	1 cut(s)	447
Fsp4HI	GCNGC	9 cut(s)	262, 288, 337, 340, 358, 418, 493, 718, 721
FspBI	CTAG	4 cut(s)	378, 480, 558, 642
GlaI	GCGC	3 cut(s)	223, 225, 664
GluI	GCNGC	9 cut(s)	262, 288, 337, 340, 358, 418, 493, 718, 721
GsaI	CCCAGC	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	5 cut(s)	197, 264, 417, 510, 549
HapII	CCGG	6 cut(s)	233, 258, 265, 582, 655, 714
HgaI	GACGC	3 cut(s)	158, 293, 684
HhaI	GCGC	3 cut(s)	224, 226, 665
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	376, 466, 612, 640
Hin6I	GCGC	3 cut(s)	222, 224, 663
HinP1I	GCGC	3 cut(s)	222, 224, 663
HinfI	GANTC	2 cut(s)	54, 294
HpaII	CCGG	6 cut(s)	233, 258, 265, 582, 655, 714
HphI	GGTGA	3 cut(s)	58, 440, 530
Hpy166II	GTNNAC	2 cut(s)	100, 674
Hpy188I	TCNGA	3 cut(s)	121, 165, 216
Hpy188III	TCNNGA	2 cut(s)	281, 705
Hpy8I	GTNNAC	2 cut(s)	100, 674
Hpy99I	CGWCG	5 cut(s)	125, 140, 152, 176, 203
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	5 cut(s)	136, 332, 566, 701, 740
HpyCH4V	TGCA	3 cut(s)	387, 608, 651
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	376, 466, 612, 640
HspAI	GCGC	3 cut(s)	222, 224, 663
KroI	GCCGGC	1 cut(s)	713
KroNI	GCCGGC	1 cut(s)	715
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
LmnI	GCTCC	2 cut(s)	260, 584
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	4 cut(s)	378, 480, 558, 642
MaeIII	GTNAC	5 cut(s)	205, 326, 368, 632, 731
MalI	GATC	6 cut(s)	16, 90, 113, 167, 321, 709
MboI	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	2 cut(s)	88, 707
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	1 cut(s)	472
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	549
MreI	CGCCGGCG	1 cut(s)	713
MroNI	GCCGGC	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	420, 492
MspI	CCGG	6 cut(s)	233, 258, 265, 582, 655, 714
MspR9I	CCNGG	5 cut(s)	234, 266, 655, 656, 779
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	3 cut(s)	224, 393, 420
NaeI	GCCGGC	1 cut(s)	715
NciI	CCSGG	4 cut(s)	234, 266, 655, 656
NdeII	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
NgoMIV	GCCGGC	1 cut(s)	713
NlaIII	CATG	4 cut(s)	376, 466, 612, 640
NlaIV	GGNNCC	2 cut(s)	580, 709
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	205, 368, 632
NspI	RCATGY	1 cut(s)	612
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 174
PdiI	GCCGGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	54, 294
PkrI	GCNGC	9 cut(s)	263, 289, 338, 341, 359, 419, 494, 719, 722
Psp6I	CCWGG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	580, 709
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	88, 707
PteI	GCGCGC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	421
SatI	GCNGC	9 cut(s)	262, 288, 337, 340, 358, 418, 493, 718, 721
Sau3AI	GATC	6 cut(s)	14, 88, 111, 165, 319, 707
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	5 cut(s)	234, 266, 655, 656, 779
SetI	ASST	3 cut(s)	316, 620, 630
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	697
Sfr303I	CCGCGG	1 cut(s)	421
SgrAI	CRCCGGYG	1 cut(s)	713
SgrBI	CCGCGG	1 cut(s)	421
SgsI	GGCGCGCC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	212
SmaI	CCCGGG	1 cut(s)	656
Sse9I	AATT	1 cut(s)	472
SspMI	CTAG	4 cut(s)	378, 480, 558, 642
StyD4I	CCNGG	5 cut(s)	232, 264, 653, 654, 777
StyI	CCWWGG	3 cut(s)	48, 192, 762
TaaI	ACNGT	5 cut(s)	136, 332, 566, 701, 740
TaqI	TCGA	4 cut(s)	17, 110, 201, 280
TasI	AATT	1 cut(s)	472
TauI	GCSGC	8 cut(s)	264, 339, 342, 360, 420, 495, 720, 723
TfiI	GAWTC	2 cut(s)	54, 294
TscAI	CASTG	2 cut(s)	214, 685
TseFI	GTSAC	3 cut(s)	205, 368, 632
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	3 cut(s)	205, 368, 632
TspDTI	ATGAA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	654
TspRI	CASTG	2 cut(s)	214, 685
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	612
XmaI	CCCGGG	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	4 cut(s)	378, 480, 558, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.