Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

9991063 .. 9992316

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGAGGAGAGGTCGACTGGGGTAGTGAAGTGGTTCAATGACACCAAGGGTTTCGGCTTCATCACCCCTGACAACAACACCGAAGATCTGTTCGTCCACCAATCCTCGATCAAATCCGACGGCTTCCGCACCGTCGCGGAGGGCGACGCCGTTGAGTTTCTGATCGCCGTCGGCGAGGACGGCAAGACCAAGGCCGTCGATGTCACTGGTCCGAACGGTGCGCCTCTGCCGGGGAGGGAGAGTTTTGCTCGCTCCGGCGGCCGTGGCGGTGGCGGTCGAGACGCTGCGGGATTCGGCGGTGCGTGGAGAGGTGGAGATCGCCGTAACGGTGGCGGAGGCGGCGGGTGTTATACTTGCGGCGATACTGGTCACATGGCGAGGGATTGCAATCGCGGTGGGAATGGAGGCGGTGGAGGCCGCGGTGGTGGTGATGGATGCTTTACTTGCGGAGGGTATGGACACATGGCAAGGAATTGTCCTAATGGGAGCAGCGGCGGTGGCGGTGGCCGTGGTGGTGAGGGTTGCTATAAGTGTGGCGATTTTGGCCATTTGGCTAGGGACTGTTTCAATGGAGCCTCCGGTGGCGGAGGCGGAGGCGGTGGCGGTGGTGCATGTTATACCTGTGGGGAGGTTGGTCACATGGCAAGGGATTGCACCAGGGGAGGGGGTGGCGGTGGACGTAGTGGCGGTCGGTATGGCTACAGTTCTGGATCTGGTGTCGGCGGCAATAGCTGTTACAACTGTGGGCAGGCTGGGCATTTTGCCAAGGAGTGTCCAAACCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

263

Amino Acids

25.77

Weight (kDa)

7.46

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	1.9e-24	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	116 - 130	2.9e-06	Zinc knuckle
zf-CCHC	PF00098	146 - 162	7.3e-06	Zinc knuckle
zf-CCHC	PF00098	175 - 190	7e-06	Zinc knuckle
zf-CCHC	PF00098	205 - 220	4.4e-08	Zinc knuckle
zf-CCHC	PF00098	245 - 261	7.9e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	3 cut(s)	140, 396, 423
AclWI	GGATC	1 cut(s)	721
AcoI	YGGCCR	3 cut(s)	262, 508, 547
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	233, 666
AgsI	TTSAA	2 cut(s)	40, 571
AjnI	CCWGG	2 cut(s)	659, 783
AluBI	AGCT	1 cut(s)	735
AluI	AGCT	1 cut(s)	735
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	5 cut(s)	195, 262, 418, 508, 547
ApeKI	GCWGC	2 cut(s)	287, 492
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	58, 443, 530
AvaII	GGWCC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	274, 504
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	8 cut(s)	137, 139, 155, 182, 199, 249, 309, 495
BciT130I	CCWGG	2 cut(s)	661, 785
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	703
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	8 cut(s)	262, 288, 343, 361, 421, 493, 496, 727
BlsI	GCNGC	8 cut(s)	263, 289, 344, 362, 422, 494, 497, 728
Bme1390I	CCNGG	3 cut(s)	234, 661, 785
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	3 cut(s)	234, 661, 785
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	428
BmuI	ACTGGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	8 cut(s)	48, 192, 233, 265, 421, 511, 660, 768
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 229, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 666
Bse1I	ACTGG	3 cut(s)	25, 214, 373
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	661, 785
BseDI	CCNNGG	8 cut(s)	48, 192, 233, 265, 421, 511, 660, 768
BseGI	GGATG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	233, 666
BseNI	ACTGG	3 cut(s)	25, 214, 373
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	274, 504
BseYI	CCCAGC	1 cut(s)	755
Bsh1236I	CGCG	3 cut(s)	140, 396, 423
Bsh1285I	CGRYCG	3 cut(s)	265, 280, 694
BshFI	GGCC	5 cut(s)	197, 264, 420, 510, 549
BsiEI	CGRYCG	3 cut(s)	265, 280, 694
BsiSI	CCGG	3 cut(s)	233, 258, 582
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	233, 666
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	5 cut(s)	197, 264, 420, 510, 549
Bsp143I	GATC	5 cut(s)	88, 111, 165, 319, 713
BspANI	GGCC	5 cut(s)	197, 264, 420, 510, 549
BspFNI	CGCG	3 cut(s)	140, 396, 423
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	25, 214, 373
BssECI	CCNNGG	8 cut(s)	48, 192, 233, 265, 421, 511, 660, 768
BssMI	GATC	5 cut(s)	88, 111, 165, 319, 713
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	48, 192, 768
Bst2UI	CCWGG	2 cut(s)	661, 785
Bst4CI	ACNGT	6 cut(s)	136, 221, 332, 566, 707, 746
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	253, 753
BstDSI	CCRYGG	3 cut(s)	265, 421, 511
BstF5I	GGATG	1 cut(s)	443
BstFNI	CGCG	3 cut(s)	140, 396, 423
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	5 cut(s)	91, 114, 168, 322, 716
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	5 cut(s)	88, 111, 165, 319, 713
BstMCI	CGRYCG	3 cut(s)	265, 280, 694
BstNI	CCWGG	2 cut(s)	661, 785
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	232, 659, 783
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	3 cut(s)	140, 396, 423
BstV1I	GCAGC	2 cut(s)	274, 504
BstX2I	RGATCY	2 cut(s)	88, 713
BstYI	RGATCY	2 cut(s)	88, 713
BstZI	CGGCCG	1 cut(s)	262
BsuRI	GGCC	5 cut(s)	197, 264, 420, 510, 549
BtgI	CCRYGG	3 cut(s)	265, 421, 511
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	253, 753
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	212
Cfr42I	CCGCGG	1 cut(s)	424
CseI	GACGC	2 cut(s)	158, 293
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	4 cut(s)	376, 466, 615, 643
DpnI	GATC	5 cut(s)	90, 113, 167, 321, 715
DpnII	GATC	5 cut(s)	88, 111, 165, 319, 713
EaeI	YGGCCR	3 cut(s)	262, 508, 547
EagI	CGGCCG	1 cut(s)	262
EciI	GGCGGA	4 cut(s)	20, 351, 603, 609
EclXI	CGGCCG	1 cut(s)	262
Eco130I	CCWWGG	3 cut(s)	48, 192, 768
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	659, 783
EcoT14I	CCWWGG	3 cut(s)	48, 192, 768
ErhI	CCWWGG	3 cut(s)	48, 192, 768
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	379, 469, 618, 646
FaiI	YATR	9 cut(s)	354, 377, 459, 467, 531, 616, 621, 644, 699
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	4 cut(s)	375, 465, 614, 642
FauI	CCCGC	2 cut(s)	283, 338
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	8 cut(s)	262, 288, 343, 361, 421, 493, 496, 727
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	8 cut(s)	262, 288, 343, 361, 421, 493, 496, 727
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	8 cut(s)	262, 288, 343, 361, 421, 493, 496, 727
GsaI	CCCAGC	1 cut(s)	759
HaeIII	GGCC	5 cut(s)	197, 264, 420, 510, 549
HapII	CCGG	3 cut(s)	233, 258, 582
HgaI	GACGC	2 cut(s)	158, 293
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	379, 469, 618, 646
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	233, 258, 582
HphI	GGTGA	3 cut(s)	58, 443, 530
Hpy166II	GTNNAC	3 cut(s)	18, 100, 680
Hpy188I	TCNGA	3 cut(s)	121, 165, 216
Hpy188III	TCNNGA	2 cut(s)	281, 711
Hpy8I	GTNNAC	3 cut(s)	18, 100, 680
Hpy99I	CGWCG	5 cut(s)	125, 140, 152, 176, 203
HpyCH4III	ACNGT	6 cut(s)	136, 221, 332, 566, 707, 746
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	3 cut(s)	390, 614, 657
HpySE526I	ACGT	1 cut(s)	682
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	379, 469, 618, 646
HspAI	GCGC	1 cut(s)	224
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	88, 111, 165, 319, 713
LmnI	GCTCC	3 cut(s)	260, 489, 575
Lsp1109I	GCAGC	2 cut(s)	274, 504
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	5 cut(s)	205, 326, 371, 638, 737
MalI	GATC	5 cut(s)	90, 113, 167, 321, 715
MboI	GATC	5 cut(s)	88, 111, 165, 319, 713
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	2 cut(s)	88, 713
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	1 cut(s)	475
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	423, 495
MspI	CCGG	3 cut(s)	233, 258, 582
MspR9I	CCNGG	3 cut(s)	234, 661, 785
MvaI	CCWGG	2 cut(s)	661, 785
MvnI	CGCG	3 cut(s)	140, 396, 423
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	5 cut(s)	88, 111, 165, 319, 713
NlaIII	CATG	4 cut(s)	379, 469, 618, 646
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	3 cut(s)	205, 371, 638
NspI	RCATGY	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 174
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	8 cut(s)	263, 289, 344, 362, 422, 494, 497, 728
Psp6I	CCWGG	2 cut(s)	659, 783
PspFI	CCCAGC	1 cut(s)	755
PspGI	CCWGG	2 cut(s)	659, 783
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	88, 713
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	8 cut(s)	262, 288, 343, 361, 421, 493, 496, 727
Sau3AI	GATC	5 cut(s)	88, 111, 165, 319, 713
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	234, 661, 785
SetI	ASST	6 cut(s)	17, 316, 626, 636, 685, 737
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	703
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	232, 659, 783
StyI	CCWWGG	3 cut(s)	48, 192, 768
TaaI	ACNGT	6 cut(s)	136, 221, 332, 566, 707, 746
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	4 cut(s)	17, 110, 201, 280
TasI	AATT	1 cut(s)	475
TauI	GCSGC	6 cut(s)	264, 345, 363, 423, 498, 729
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	3 cut(s)	205, 371, 638
TseI	GCWGC	2 cut(s)	287, 492
Tsp45I	GTSAC	3 cut(s)	205, 371, 638
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.