Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

59950374 .. 59951693

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGCCGAGACCGCCAGATCCACCGGCACGGTCAAGTGGTTCAGCGCGCAGAAAGGGTTCGGCTTCATATCCCCGGAGGACGGCGGCGAGGACCTCTTCGTCCACCAGACTTCGATCCAGTCCGACGGCTTCCGCACCCTCTCCGAGGGCCAGGCCGTCGAGTTCCTCGTCGAAATCAGCGAAGACGGCCGCACCAAAGCCGTCGACGTCGTCAACCTCACCCGATCCCGCCGTCCTGGCTTCGACCGCGGAGGACGCGGCCGGAGGGGCAGAGGCCGCGGTGGTTATGGGAGGTCTGGCGGAGGCCCGGAGGAATATAGTGTCGCCAGAGGCGGAGGGAGGGGTGACGGTTATGGTGGTGGTGGTCGTGAGTGCTACAGTTGCGGTGAAATTGGGCATTTGGCGAGGGACTGTTACGAGGGCGGTGGCGGGGGTGGGAGATTTGGCGGCCGTGGGAGAGGTGGAGGTAGAGGCTACGGTGGCCGTGGTGGCGGCCGGGGGCGTCGTGGCGGTGGTTGTTATAATTGTGGAGAGGAAGGGCATTTGGCAAGGGAATGCGCGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

189

Amino Acids

19.56

Weight (kDa)

9.19

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	9 - 72	7.1e-26	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	125 - 139	2.2e-06	Zinc knuckle
zf-CCHC	PF00098	173 - 187	2.7e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	5 cut(s)	50, 252, 261, 282, 563
AclWI	GGATC	3 cut(s)	15, 112, 222
AcoI	YGGCCR	5 cut(s)	190, 262, 451, 484, 496
AcyI	GRCGYC	2 cut(s)	210, 505
AfiI	CCNNNNNNNGG	2 cut(s)	83, 148
AjnI	CCWGG	2 cut(s)	153, 238
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	15, 112, 222
AoxI	GGCC	9 cut(s)	151, 156, 190, 262, 277, 307, 451, 484, 496
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	50, 52, 563, 565
AspS9I	GGNCC	3 cut(s)	94, 151, 308
AsuC2I	CCSGG	3 cut(s)	77, 311, 500
AsuHPI	GGTGA	3 cut(s)	214, 359, 401
AvaII	GGWCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	192
BceAI	ACGGC	8 cut(s)	100, 143, 145, 188, 205, 219, 438, 471
BciT130I	CCWGG	2 cut(s)	155, 240
BcnI	CCSGG	3 cut(s)	77, 311, 500
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	379
BglI	GCCNNNNNGGC	3 cut(s)	240, 270, 492
BisI	GCNGC	7 cut(s)	6, 88, 193, 262, 280, 451, 496
BlsI	GCNGC	7 cut(s)	7, 89, 194, 263, 281, 452, 497
Bme1390I	CCNGG	5 cut(s)	77, 155, 240, 311, 500
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	94, 151, 308
BmrFI	CCNGG	5 cut(s)	77, 155, 240, 311, 500
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	3 cut(s)	77, 311, 500
BsaHI	GRCGYC	2 cut(s)	210, 505
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	7 cut(s)	75, 147, 250, 280, 454, 487, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 148
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	155, 240
BseDI	CCNNGG	7 cut(s)	75, 147, 250, 280, 454, 487, 499
BseLI	CCNNNNNNNGG	2 cut(s)	83, 148
BseNI	ACTGG	1 cut(s)	121
BsePI	GCGCGC	2 cut(s)	48, 561
BseX3I	CGGCCG	4 cut(s)	190, 262, 451, 496
Bsh1236I	CGCG	5 cut(s)	50, 252, 261, 282, 563
Bsh1285I	CGRYCG	5 cut(s)	193, 250, 265, 454, 499
BshFI	GGCC	9 cut(s)	153, 158, 192, 264, 279, 309, 453, 486, 498
BsiEI	CGRYCG	5 cut(s)	193, 250, 265, 454, 499
BsiSI	CCGG	5 cut(s)	27, 77, 265, 311, 499
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	83, 148
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	9 cut(s)	153, 158, 192, 264, 279, 309, 453, 486, 498
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	20, 117, 227
BspANI	GGCC	9 cut(s)	153, 158, 192, 264, 279, 309, 453, 486, 498
BspFNI	CGCG	5 cut(s)	50, 252, 261, 282, 563
BspPI	GGATC	3 cut(s)	15, 112, 222
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	7 cut(s)	75, 147, 250, 280, 454, 487, 499
BssHII	GCGCGC	2 cut(s)	48, 561
BssMI	GATC	3 cut(s)	20, 117, 227
BssNI	GRCGYC	2 cut(s)	210, 505
Bst2UI	CCWGG	2 cut(s)	155, 240
Bst4CI	ACNGT	5 cut(s)	34, 353, 383, 416, 482
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	210, 505
BstC8I	GCNNGC	2 cut(s)	50, 563
BstDSI	CCRYGG	4 cut(s)	250, 280, 454, 487
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstFNI	CGCG	5 cut(s)	50, 252, 261, 282, 563
BstHHI	GCGC	4 cut(s)	50, 52, 563, 565
BstKTI	GATC	3 cut(s)	23, 120, 230
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	20, 117, 227
BstMCI	CGRYCG	5 cut(s)	193, 250, 265, 454, 499
BstNI	CCWGG	2 cut(s)	155, 240
BstSCI	CCNGG	5 cut(s)	75, 153, 238, 309, 498
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	5 cut(s)	50, 252, 261, 282, 563
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	4 cut(s)	190, 262, 451, 496
BsuRI	GGCC	9 cut(s)	153, 158, 192, 264, 279, 309, 453, 486, 498
BtgI	CCRYGG	4 cut(s)	250, 280, 454, 487
Cac8I	GCNNGC	2 cut(s)	50, 563
CfoI	GCGC	4 cut(s)	50, 52, 563, 565
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	94, 151, 308
Cfr42I	CCGCGG	2 cut(s)	253, 283
CseI	GACGC	2 cut(s)	267, 494
DpnI	GATC	3 cut(s)	22, 119, 229
DpnII	GATC	3 cut(s)	20, 117, 227
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	5 cut(s)	190, 262, 451, 484, 496
EagI	CGGCCG	4 cut(s)	190, 262, 451, 496
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	318, 351
EclXI	CGGCCG	4 cut(s)	190, 262, 451, 496
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	4 cut(s)	190, 262, 451, 496
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	153, 238
FaiI	YATR	5 cut(s)	71, 291, 321, 357, 525
FaqI	GGGAC	1 cut(s)	425
FauI	CCCGC	2 cut(s)	239, 425
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	6, 88, 193, 262, 280, 451, 496
Fsp4HI	GCNGC	7 cut(s)	6, 88, 193, 262, 280, 451, 496
GlaI	GCGC	4 cut(s)	49, 51, 562, 564
GluI	GCNGC	7 cut(s)	6, 88, 193, 262, 280, 451, 496
HaeIII	GGCC	9 cut(s)	153, 158, 192, 264, 279, 309, 453, 486, 498
HapII	CCGG	5 cut(s)	27, 77, 265, 311, 499
HgaI	GACGC	2 cut(s)	267, 494
HhaI	GCGC	4 cut(s)	50, 52, 563, 565
Hin1I	GRCGYC	2 cut(s)	210, 505
Hin6I	GCGC	4 cut(s)	48, 50, 561, 563
HinP1I	GCGC	4 cut(s)	48, 50, 561, 563
HincII	GTYRAC	2 cut(s)	208, 217
HindII	GTYRAC	2 cut(s)	208, 217
HpaII	CCGG	5 cut(s)	27, 77, 265, 311, 499
HphI	GGTGA	3 cut(s)	214, 359, 401
Hpy166II	GTNNAC	3 cut(s)	106, 208, 217
Hpy188I	TCNGA	2 cut(s)	127, 148
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	106, 208, 217
Hpy99I	CGWCG	7 cut(s)	131, 164, 176, 209, 212, 215, 510
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	5 cut(s)	34, 353, 383, 416, 482
HpyCH4IV	ACGT	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	210, 505
HspAI	GCGC	4 cut(s)	48, 50, 561, 563
KspI	CCGCGG	2 cut(s)	253, 283
Kzo9I	GATC	3 cut(s)	20, 117, 227
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	347, 416
MalI	GATC	3 cut(s)	22, 119, 229
MboI	GATC	3 cut(s)	20, 117, 227
MboII	GAAGA	2 cut(s)	91, 197
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	2 cut(s)	393, 526
MmeI	TCCRAC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	252, 282
MspI	CCGG	5 cut(s)	27, 77, 265, 311, 499
MspR9I	CCNGG	5 cut(s)	77, 155, 240, 311, 500
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	155, 240
MvnI	CGCG	5 cut(s)	50, 252, 261, 282, 563
NciI	CCSGG	3 cut(s)	77, 311, 500
NdeII	GATC	3 cut(s)	20, 117, 227
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	347
PauI	GCGCGC	2 cut(s)	48, 561
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 180
PctI	GAATGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	7 cut(s)	7, 89, 194, 263, 281, 452, 497
PpuMI	RGGWCCY	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	153, 238
PspGI	CCWGG	2 cut(s)	153, 238
PspPI	GGNCC	3 cut(s)	94, 151, 308
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	212
PteI	GCGCGC	2 cut(s)	48, 561
SacII	CCGCGG	2 cut(s)	253, 283
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	7 cut(s)	6, 88, 193, 262, 280, 451, 496
Sau3AI	GATC	3 cut(s)	20, 117, 227
Sau96I	GGNCC	3 cut(s)	94, 151, 308
ScrFI	CCNGG	5 cut(s)	77, 155, 240, 311, 500
SetI	ASST	6 cut(s)	99, 213, 222, 299, 466, 472
SfcI	CTRYAG	1 cut(s)	379
Sfr303I	CCGCGG	2 cut(s)	253, 283
SgrBI	CCGCGG	2 cut(s)	253, 283
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	393, 526
StyD4I	CCNGG	5 cut(s)	75, 153, 238, 309, 498
TaaI	ACNGT	5 cut(s)	34, 353, 383, 416, 482
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	5 cut(s)	116, 162, 174, 207, 246
TasI	AATT	2 cut(s)	393, 526
TauI	GCSGC	6 cut(s)	90, 195, 264, 282, 453, 498
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.