Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

10523864 .. 10524680

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1130700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGAGGAGAGATCGACCGGGAAGGTGCGGTGGTTCAACGACGTCAAGGGCTACGGCTTCATCACCCCCGACGCCGGAGGCGAGGACCTCTTCGTCCACCAGTCCTCGATCAGATCCGACGGATTCCGCACCGTCGCGGAGGGTGAGTCCGTCGAGTTCCTCATCGACTTCGGCGATGACGGCAAGACCAAGGCCATCGATGTGACAGGCCCTGACGGTGCGCCGTTGATCGGTAACAAGAAGGAGAGCTTCGGTCACTCTGGTGGCCGTGGCGGAGGTGGTGGTGGTTCTGGATTTAGCGGTGGATGGAGAGGCGGTGACCGGAGGAATGGGGGCGGTTCCGGTGGTGATGGGTGCTATAGTTGCGGCGAGCCTGGGCACATGGCTAGAGATTGCCGTCAGGGCAGTGGTGGTGGCGGAGCCGCTGGTGGTGGCTGTTTTACTTGCGGTGGGTATGGCCACGTGGCAAGGGCCTGCCCTAATGGGAGTATCGGTGGTGGTGGAGGTGGTGGCGGAGGCGGCTGCTACAAGTGTGGTGCATTTGGGCATTTGGCTAGGGACTGTGCTACTGGTGGAGGAAGCGGCGGCGCTGGCGCTTGCTATAGCTGTGGGGCTTATGGCCACATGGCCAGGGATTGCAGCAGCGGTGGTGGGGATGGCGGTGCTCGTGGAGGAGGACGATATGGATTCAGCTCTGGATCAGGTTGTTATAACTGTGGGGAATCAGGGCATTTTGCTAAGGAGTGTTCTAACCCTCCTAATGCCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

259

Amino Acids

25.06

Weight (kDa)

6.63

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	7 - 71	1.1e-22	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	119 - 135	1.2e-07	Zinc knuckle
zf-CCHC	PF00098	175 - 190	4.4e-06	Zinc knuckle
zf-CCHC	PF00098	200 - 215	2.4e-06	Zinc knuckle
zf-CCHC	PF00098	236 - 251	3.6e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	48
AccII	CGCG	1 cut(s)	140
AclWI	GGATC	2 cut(s)	111, 709
AcoI	YGGCCR	4 cut(s)	268, 460, 622, 630
AcvI	CACGTG	1 cut(s)	466
AcyI	GRCGYC	2 cut(s)	45, 75
AfiI	CCNNNNNNNGG	2 cut(s)	77, 233
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	376, 632
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	252, 609, 696
AluI	AGCT	3 cut(s)	252, 609, 696
Alw21I	GWGCWC	1 cut(s)	670
AlwI	GGATC	2 cut(s)	111, 709
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	7 cut(s)	195, 211, 268, 460, 474, 622, 630
ApeKI	GCWGC	3 cut(s)	525, 642, 645
AspLEI	GCGC	3 cut(s)	226, 593, 599
AspS9I	GGNCC	3 cut(s)	88, 212, 474
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	58, 158, 332, 362
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	384
BalI	TGGCCA	3 cut(s)	462, 624, 632
BauI	CACGAG	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	670
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	512, 654, 657
BccI	CCATC	4 cut(s)	206, 303, 347, 653
BceAI	ACGGC	5 cut(s)	73, 199, 211, 255, 384
BciT130I	CCWGG	2 cut(s)	378, 634
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	2 cut(s)	390, 558
BfmI	CTRYAG	2 cut(s)	361, 604
BfoI	RGCGCY	2 cut(s)	594, 600
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	8 cut(s)	370, 426, 523, 526, 586, 589, 643, 646
BlsI	GCNGC	8 cut(s)	371, 427, 524, 527, 587, 590, 644, 647
Bme1390I	CCNGG	3 cut(s)	22, 378, 634
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	88, 212, 474
BmiI	GGNNCC	2 cut(s)	343, 424
BmrFI	CCNGG	3 cut(s)	22, 378, 634
Bpu10I	CCTNAGC	2 cut(s)	6, 741
BpuMI	CCSGG	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	2 cut(s)	45, 75
BsaJI	CCNNGG	5 cut(s)	192, 271, 377, 633, 768
BsaWI	WCCGGW	2 cut(s)	324, 344
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 164, 304, 334, 481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 233
Bse1I	ACTGG	2 cut(s)	103, 577
BseBI	CCWGG	2 cut(s)	378, 634
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	5 cut(s)	192, 271, 377, 633, 768
BseGI	GGATG	2 cut(s)	314, 664
BseLI	CCNNNNNNNGG	2 cut(s)	77, 233
BseNI	ACTGG	2 cut(s)	103, 577
BseRI	GAGGAG	2 cut(s)	23, 690
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	512, 654, 657
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	7 cut(s)	197, 213, 270, 462, 476, 624, 632
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	4 cut(s)	21, 78, 325, 345
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	77, 233
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	7 cut(s)	197, 213, 270, 462, 476, 624, 632
Bsp1286I	GDGCHC	2 cut(s)	384, 670
Bsp143I	GATC	5 cut(s)	14, 111, 116, 231, 701
BspANI	GGCC	7 cut(s)	197, 213, 270, 462, 476, 624, 632
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	343, 424
BspPI	GGATC	2 cut(s)	111, 709
BsrI	ACTGG	2 cut(s)	103, 577
BssECI	CCNNGG	5 cut(s)	192, 271, 377, 633, 768
BssMI	GATC	5 cut(s)	14, 111, 116, 231, 701
BssNI	GRCGYC	2 cut(s)	45, 75
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	2 cut(s)	192, 768
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	2 cut(s)	378, 634
Bst4CI	ACNGT	4 cut(s)	136, 221, 566, 719
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	45, 75
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	4 cut(s)	374, 478, 595, 601
BstDEI	CTNAG	2 cut(s)	6, 741
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	314, 664
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	594, 600
BstHHI	GCGC	3 cut(s)	226, 593, 599
BstKTI	GATC	5 cut(s)	17, 114, 119, 234, 704
BstMBI	GATC	5 cut(s)	14, 111, 116, 231, 701
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	5 cut(s)	183, 366, 405, 522, 594
BstNI	CCWGG	2 cut(s)	378, 634
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	20, 376, 632
BstSFI	CTRYAG	2 cut(s)	361, 604
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	512, 654, 657
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	7 cut(s)	197, 213, 270, 462, 476, 624, 632
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	314, 664
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	374, 478, 595, 601
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	3 cut(s)	226, 593, 599
Cfr13I	GGNCC	3 cut(s)	88, 212, 474
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	385, 628
DdeI	CTNAG	2 cut(s)	6, 741
DpnI	GATC	5 cut(s)	16, 113, 118, 233, 703
DpnII	GATC	5 cut(s)	14, 111, 116, 231, 701
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	4 cut(s)	268, 460, 622, 630
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	3 cut(s)	291, 435, 531
Eco130I	CCWWGG	2 cut(s)	192, 768
Eco47I	GGWCC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	466
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	3 cut(s)	88, 212, 474
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	376, 632
EcoT14I	CCWWGG	2 cut(s)	192, 768
ErhI	CCWWGG	2 cut(s)	192, 768
FaeI	CATG	2 cut(s)	388, 631
FaiI	YATR	8 cut(s)	363, 386, 459, 606, 621, 629, 687, 714
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	2 cut(s)	384, 627
Fnu4HI	GCNGC	8 cut(s)	370, 426, 523, 526, 586, 589, 643, 646
FokI	GGATG	2 cut(s)	321, 671
Fsp4HI	GCNGC	8 cut(s)	370, 426, 523, 526, 586, 589, 643, 646
FspBI	CTAG	2 cut(s)	390, 558
GlaI	GCGC	3 cut(s)	225, 592, 598
GluI	GCNGC	8 cut(s)	370, 426, 523, 526, 586, 589, 643, 646
HaeII	RGCGCY	2 cut(s)	594, 600
HaeIII	GGCC	7 cut(s)	197, 213, 270, 462, 476, 624, 632
HapII	CCGG	4 cut(s)	21, 78, 325, 345
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	226, 593, 599
Hin1I	GRCGYC	2 cut(s)	45, 75
Hin1II	CATG	2 cut(s)	388, 631
Hin6I	GCGC	3 cut(s)	224, 591, 597
HinP1I	GCGC	3 cut(s)	224, 591, 597
HinfI	GANTC	4 cut(s)	126, 149, 690, 725
HpaII	CCGG	4 cut(s)	21, 78, 325, 345
HphI	GGTGA	4 cut(s)	58, 158, 332, 362
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	116, 121
Hpy188III	TCNNGA	2 cut(s)	294, 699
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	5 cut(s)	47, 77, 125, 140, 158
HpyAV	CCTTC	2 cut(s)	19, 238
HpyCH4III	ACNGT	4 cut(s)	136, 221, 566, 719
HpyCH4IV	ACGT	2 cut(s)	45, 465
HpyCH4V	TGCA	2 cut(s)	542, 642
HpyF10VI	GCNNNNNNNGC	5 cut(s)	183, 366, 405, 522, 594
HpyF3I	CTNAG	2 cut(s)	6, 741
HpySE526I	ACGT	2 cut(s)	45, 465
Hsp92I	GRCGYC	2 cut(s)	45, 75
Hsp92II	CATG	2 cut(s)	388, 631
HspAI	GCGC	3 cut(s)	224, 591, 597
Kzo9I	GATC	5 cut(s)	14, 111, 116, 231, 701
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	3 cut(s)	512, 654, 657
MaeI	CTAG	2 cut(s)	390, 558
MaeII	ACGT	2 cut(s)	45, 465
MaeIII	GTNAC	4 cut(s)	205, 236, 257, 320
MalI	GATC	5 cut(s)	16, 113, 118, 233, 703
MboI	GATC	5 cut(s)	14, 111, 116, 231, 701
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	384, 670
MlsI	TGGCCA	3 cut(s)	462, 624, 632
MluNI	TGGCCA	3 cut(s)	462, 624, 632
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	3 cut(s)	462, 624, 632
MscI	TGGCCA	3 cut(s)	462, 624, 632
MslI	CAYNNNNRTG	2 cut(s)	203, 264
Msp20I	TGGCCA	3 cut(s)	462, 624, 632
MspA1I	CMGCKG	2 cut(s)	428, 648
MspI	CCGG	4 cut(s)	21, 78, 325, 345
MspR9I	CCNGG	3 cut(s)	22, 378, 634
MvaI	CCWGG	2 cut(s)	378, 634
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	183, 366, 405, 522, 594
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	5 cut(s)	14, 111, 116, 231, 701
NlaIII	CATG	2 cut(s)	388, 631
NlaIV	GGNNCC	2 cut(s)	343, 424
NmuCI	GTSAC	3 cut(s)	205, 257, 320
OliI	CACNNNNGTG	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 174
PfeI	GAWTC	3 cut(s)	126, 690, 725
PkrI	GCNGC	8 cut(s)	371, 427, 524, 527, 587, 590, 644, 647
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	376, 632
PspCI	CACGTG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	376, 632
PspN4I	GGNNCC	2 cut(s)	343, 424
PspPI	GGNCC	3 cut(s)	88, 212, 474
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	203, 264
SatI	GCNGC	8 cut(s)	370, 426, 523, 526, 586, 589, 643, 646
Sau3AI	GATC	5 cut(s)	14, 111, 116, 231, 701
Sau96I	GGNCC	3 cut(s)	88, 212, 474
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	22, 378, 634
SduI	GDGCHC	2 cut(s)	384, 670
SfcI	CTRYAG	2 cut(s)	361, 604
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	203, 264
SspMI	CTAG	2 cut(s)	390, 558
StyD4I	CCNGG	3 cut(s)	20, 376, 632
StyI	CCWWGG	2 cut(s)	192, 768
TaaI	ACNGT	4 cut(s)	136, 221, 566, 719
TaiI	ACGT	2 cut(s)	48, 468
TaqI	TCGA	5 cut(s)	17, 110, 156, 168, 201
TaqII	GACCGA	1 cut(s)	245
TauI	GCSGC	5 cut(s)	372, 428, 525, 588, 591
TfiI	GAWTC	3 cut(s)	126, 690, 725
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	205, 257, 320
TseI	GCWGC	3 cut(s)	525, 642, 645
Tsp45I	GTSAC	3 cut(s)	205, 257, 320
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	2 cut(s)	138, 142
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	88
XspI	CTAG	2 cut(s)	390, 558
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.