Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

21215734 .. 21217121

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCGCCGAGACCGCGAGATCCACCGGCACGGTCAAGTGGTTCAGCGCCCAGAAGGGCTTCGGTTTCATATCCCCGGAGGACGGCGGCGAGGATCTCTTCGTCCACCAGACCTCGATCCAGTCCGACGGCTTCCGCACCCTCTCCGAGGGCCAGACCGTCGAGTTCGTCGTCGAGTTCAGCGAGGACGGCCGCACCAAAGCCGTCGACGTCGTCAACCTCACCCGATCCCGCCGCCCCGGATACGACCAAGGAGGACGTGGCCGTGGAGGCGGGAGGGGCGGCCACCGCGGTGGTTATGGGAGGTCTGGCGGGGGCCCAGAGGAATATAGTGTGGCCAGAGGAGGCGGGAGGGGTGATGGCTACGGCGGTCGTGGAGGTTATGGTGGCGGTGGTCGTGGCGGTGGCGGTGAGTGCTACAATTGCGGTGAAGTTGGGCATTTGGCGAGGGATTGTTACGAGGGCGGAGGTGGGGGTGGGAGATTTGGCGGCCGTGGTCGAGGTGGAGGTAGAGGTAGAGGCTACGGTGGAGGCCGGGGCCGTGGTGGTGGTTGTTATAATTGTGGAGAGGATGGGCATTTGGCCAGGGAATGCCCTAATGATCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

204

Amino Acids

20.72

Weight (kDa)

8.78

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	9 - 72	2.3e-25	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	138 - 152	3.5e-07	Zinc knuckle
zf-CCHC	PF00098	184 - 200	1.2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	2 cut(s)	17, 291
AclWI	GGATC	4 cut(s)	15, 102, 112, 222
AcoI	YGGCCR	7 cut(s)	3, 190, 262, 283, 336, 490, 582
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	83, 148
AjiI	CACGTC	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	584
AleI	CACNNNNGTG	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	4 cut(s)	15, 102, 112, 222
ApaI	GGGCCC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	151, 316, 317, 538
AsuC2I	CCSGG	3 cut(s)	77, 240, 536
AsuHPI	GGTGA	4 cut(s)	214, 368, 422, 440
BaeGI	GKGCMC	1 cut(s)	320
BalI	TGGCCA	2 cut(s)	338, 584
BanII	GRGCYC	1 cut(s)	320
BccI	CCATC	2 cut(s)	353, 566
BceAI	ACGGC	8 cut(s)	100, 145, 188, 205, 249, 382, 477, 525
BciT130I	CCWGG	1 cut(s)	586
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	3 cut(s)	77, 240, 536
BcoDI	GTCTC	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	6 cut(s)	6, 88, 193, 235, 283, 490
BlsI	GCNGC	6 cut(s)	7, 89, 194, 236, 284, 491
Bme1390I	CCNGG	4 cut(s)	77, 240, 536, 586
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	151, 316, 317, 538
BmiI	GGNNCC	3 cut(s)	317, 318, 539
BmrFI	CCNGG	4 cut(s)	77, 240, 536, 586
BpuMI	CCSGG	3 cut(s)	77, 240, 536
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 148
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	586
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	83, 148
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	320
BseX3I	CGGCCG	2 cut(s)	190, 490
Bsh1236I	CGCG	2 cut(s)	17, 291
Bsh1285I	CGRYCG	3 cut(s)	193, 373, 493
BsiEI	CGRYCG	3 cut(s)	193, 373, 493
BsiSI	CCGG	4 cut(s)	27, 77, 240, 535
BslI	CCNNNNNNNGG	2 cut(s)	83, 148
BsmAI	GTCTC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	596
Bso31I	GGTCTC	1 cut(s)	5
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	20, 94, 117, 227, 601
BspFNI	CGCG	2 cut(s)	17, 291
BspLI	GGNNCC	3 cut(s)	317, 318, 539
BspPI	GGATC	4 cut(s)	15, 102, 112, 222
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	5 cut(s)	20, 94, 117, 227, 601
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	34, 160, 527
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	210
BstDSI	CCRYGG	4 cut(s)	265, 289, 493, 541
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	17, 291
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	5 cut(s)	23, 97, 120, 230, 604
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	5 cut(s)	20, 94, 117, 227, 601
BstMCI	CGRYCG	3 cut(s)	193, 373, 493
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 189, 270, 279, 288, 414, 423
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	4 cut(s)	75, 238, 534, 584
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	2 cut(s)	17, 291
BstX2I	RGATCY	2 cut(s)	20, 94
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	20, 94
BstZI	CGGCCG	2 cut(s)	190, 490
BsuI	GTATCC	1 cut(s)	236
BtgI	CCRYGG	4 cut(s)	265, 289, 493, 541
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	577
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	151, 316, 317, 538
Cfr42I	CCGCGG	1 cut(s)	292
DpnI	GATC	5 cut(s)	22, 96, 119, 229, 603
DpnII	GATC	5 cut(s)	20, 94, 117, 227, 601
EaeI	YGGCCR	7 cut(s)	3, 190, 262, 283, 336, 490, 582
EagI	CGGCCG	2 cut(s)	190, 490
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	480
EclXI	CGGCCG	2 cut(s)	190, 490
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	5
Eco52I	CGGCCG	2 cut(s)	190, 490
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	250
FaiI	YATR	5 cut(s)	71, 300, 330, 384, 558
FauI	CCCGC	4 cut(s)	239, 266, 305, 341
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	6 cut(s)	6, 88, 193, 235, 283, 490
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	6 cut(s)	6, 88, 193, 235, 283, 490
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	6 cut(s)	6, 88, 193, 235, 283, 490
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	4 cut(s)	27, 77, 240, 535
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	208, 217
HindII	GTYRAC	2 cut(s)	208, 217
HpaII	CCGG	4 cut(s)	27, 77, 240, 535
HphI	GGTGA	4 cut(s)	214, 368, 422, 440
Hpy166II	GTNNAC	3 cut(s)	106, 208, 217
Hpy188I	TCNGA	3 cut(s)	127, 148, 606
Hpy8I	GTNNAC	3 cut(s)	106, 208, 217
Hpy99I	CGWCG	7 cut(s)	131, 164, 173, 176, 209, 212, 215
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	3 cut(s)	34, 160, 527
HpyCH4IV	ACGT	2 cut(s)	210, 259
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 189, 270, 279, 288, 414, 423
HpySE526I	ACGT	2 cut(s)	210, 259
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	601
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	20, 94, 117, 227, 601
MaeII	ACGT	2 cut(s)	210, 259
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	22, 96, 119, 229, 603
MboI	GATC	5 cut(s)	20, 94, 117, 227, 601
MboII	GAAGA	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	421
MflI	RGATCY	2 cut(s)	20, 94
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	2 cut(s)	338, 584
MluCI	AATT	2 cut(s)	421, 559
MluNI	TGGCCA	2 cut(s)	338, 584
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	2 cut(s)	338, 584
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	2 cut(s)	338, 584
MslI	CAYNNNNRTG	1 cut(s)	291
Msp20I	TGGCCA	2 cut(s)	338, 584
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	4 cut(s)	27, 77, 240, 535
MspR9I	CCNGG	4 cut(s)	77, 240, 536, 586
MunI	CAATTG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	2 cut(s)	17, 291
MwoI	GCNNNNNNNGC	7 cut(s)	14, 189, 270, 279, 288, 414, 423
NciI	CCSGG	3 cut(s)	77, 240, 536
NdeII	GATC	5 cut(s)	20, 94, 117, 227, 601
NlaIV	GGNNCC	3 cut(s)	317, 318, 539
NmeAIII	GCCGAG	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 180
PctI	GAATGC	1 cut(s)	596
PdmI	GAANNNNTTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	7, 89, 194, 236, 284, 491
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	317, 318, 539
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	4 cut(s)	151, 316, 317, 538
PsuI	RGATCY	2 cut(s)	20, 94
PsyI	GACNNNGTC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	291
SacII	CCGCGG	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	6 cut(s)	6, 88, 193, 235, 283, 490
Sau3AI	GATC	5 cut(s)	20, 94, 117, 227, 601
Sau96I	GGNCC	4 cut(s)	151, 316, 317, 538
ScrFI	CCNGG	4 cut(s)	77, 240, 536, 586
SduI	GDGCHC	1 cut(s)	320
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
SgrDI	CGTCGACG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	421, 559
StyD4I	CCNGG	4 cut(s)	75, 238, 534, 584
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	34, 160, 527
TaiI	ACGT	2 cut(s)	213, 262
TaqI	TCGA	5 cut(s)	116, 162, 174, 207, 499
TasI	AATT	2 cut(s)	421, 559
TauI	GCSGC	6 cut(s)	8, 90, 195, 237, 285, 492
TspDTI	ATGAA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.