Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006037

Physical Location & Seq

Genomic Coordinates Reverse (-)

54860663 .. 54860977

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG369100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTGAAGATATATCGACACGGCAGGTGTCTGAGGAGAGATTGACGGGGAAGGTGAAGTGGTTCAACGACTCGAAGGGTTTCGGCTTCATCACCCCGGACGACGACGACAGAGAAGATTTGTTCGTTCACTTCTCGGCGATCAAATCCGACGGCTACCGCACTATCATGGATGGCCAGGCCGTCGAATTCCAAATCGGGGTAGGCCCTCGCGGCTCGACCCAGGCGAACAACGTCACTGGCCCCAATGGCGCTGCTATGCAGGGGCAACGGAAGGAGAGAGTGGGACTGTTCGGTTGGACTAGGCGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

6.57

Isoelectric Point (pI)

20.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	16 - 81	2.9e-25	'Cold-shock' DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17870
fragaria_vesca	FvH4_1g11721 FvH4_1g11721 FvH4_2g26420
malus_domestica	MD02G1130700.v1.1 MD05G1089000.v1.1 MD15G1244400.v1.1 MD16G1153300.v1.1
prunus_persica	Prupe.1G503000_v2.0.a1 Prupe.7G169300_v2.0.a1
pyrus_communis	pycom15g21520 pycom15g31770
rosa_chinensis	RchiOBHm_Chr2g0099321 RchiOBHm_Chr6g0295081
rosa_laevigata	RLG00000011821 RLG00000016871
rosa_roxburghii	Rroxscaffold_2G00143210
rosa_rugosa	Rorug02G0078600 Rorug06G0249000
rosa_samantha	Rh2AG128100 Rh2AG369100 Rh2BG131000 Rh2CG132200 Rh6BG369800 Rh6CG376300
rosa_wichuraiana	Rw2G009890 Rw6G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	160, 213, 307, 310
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	177, 222
AoxI	GGCC	4 cut(s)	175, 180, 205, 241
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	2 cut(s)	62, 80
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	206, 242
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	67, 85
BalI	TGGCCA	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	3 cut(s)	38, 167, 169
BciT130I	CCWGG	2 cut(s)	179, 224
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	2 cut(s)	213, 249
BisI	GCNGC	3 cut(s)	214, 255, 308
BlsI	GCNGC	3 cut(s)	215, 256, 309
Bme1390I	CCNGG	3 cut(s)	98, 179, 224
BmgT120I	GGNCC	2 cut(s)	206, 242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	98, 179, 224
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	96, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	179, 224
BseDI	CCNNGG	2 cut(s)	96, 222
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	177, 182, 207, 243
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	177, 182, 207, 243
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	160, 213, 307, 310
BspANI	GGCC	4 cut(s)	177, 182, 207, 243
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	96, 222
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	179, 224
Bst4CI	ACNGT	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 249
BstNI	CCWGG	2 cut(s)	179, 224
BstSCI	CCNGG	3 cut(s)	96, 177, 222
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	177, 182, 207, 243
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	206, 242
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	7 cut(s)	87, 156, 177, 182, 207, 216, 243
CviKI_1	RGCY	7 cut(s)	87, 156, 177, 182, 207, 216, 243
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	177, 222
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	14, 170, 260
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	214, 255, 308
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	214, 255, 308
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	214, 255, 308
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	177, 182, 207, 243
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	67, 85
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	34, 151
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	107, 110, 155, 188
HpyAV	CCTTC	3 cut(s)	46, 70, 268
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 249
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	9 cut(s)	11, 18, 111, 164, 191, 209, 225, 236, 248
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	20, 128
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	174, 278
MnlI	CCTC	2 cut(s)	28, 219
Mox20I	TGGCCA	1 cut(s)	177
MroXI	GAANNNNTTC	2 cut(s)	62, 80
MscI	TGGCCA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	98, 179, 224
MvaI	CCWGG	2 cut(s)	179, 224
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	213, 249
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PdmI	GAANNNNTTC	2 cut(s)	62, 80
PkrI	GCNGC	3 cut(s)	215, 256, 309
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	177, 222
PspGI	CCWGG	2 cut(s)	177, 222
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	206, 242
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	3 cut(s)	214, 255, 308
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	206, 242
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	98, 179, 224
SetI	ASST	3 cut(s)	30, 57, 237
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	160, 213, 307, 310
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	96, 177, 222
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	17, 74, 186, 218
TasI	AATT	1 cut(s)	188
TauI	GCSGC	2 cut(s)	216, 310
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	62, 80
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.