MD15G1244300.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009846
Physical Location & Seq
Reverse (-)
20082607 .. 20084486
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1244300.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGCTTCCCATCAAGCCTTTTCATCTTTCTTATTCCTTGTCTGTCTCCTTCAATCCATTGGAGTCGGTTACTCGGCGACGTTCACGATCACAAACAAGTGCACCAACACCATATGGCCGGGCATTTTGTCGAATGCAGGGACGGACCAGCTACCCACTACTGGATTCGCTTTGGGTCCTGGAGAGTCTAACACGTTCTCTGTTCCCACCTCGTGGTCGGGTAGGTTATGGGGGCGGACGCTCTGCTCCCAGGACTCAACCACCGGAAAGTTCACTTGTGTGACAGCCGACTGCGGATCTTCTGCAGTCGAATGTGCTGGTGGTGGAGCCACGCCGCCTGCTACTCTCGCGGAGTTCACGTTGAACGGCGCGGGCGGGCTGGACTTCTACGACGTGAGTTTGGTCGACGGGTATAATCTTCCCATGTTGGTGGTGGCCGAGGGCGGGACCGGAGGGAACTGCACGACCACCGGGTGCGTGGTGGACTTGAACGCCGCGTGCCCCTCGGAGCTGAAGGTGACAGCGAGTGACGAGGGCGTGGCGTGTAAAAGCGCGTGCGAGGCGTTCGGGGACCCTCAGTACTGCTGTAGTGGGGCCTACGCTACGCCGGACACATGCAAACCGAGTTCTTACTCGCAGTTTTTTAAGACTGCATGCCCGAAAGCTTACAGCTATGCTTACGATGACGGCACCAGCACCTTCACCTGTGCTTCCGCTAATTATATCATCACTTTCTGCCCCACTCCTTCAACAAGTGTGAAGTCGTCGAATGGGCAGGTCCCTGGTGCAGTCGATGTCTCAGCTAGTTTACGTAATACGATGCCCAACTTCGTCGTTATGGCCGTCACTGTTATGGCGGCAGCTTGGCGGTTGCCGCCACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

296

Amino Acids

30.45

Weight (kDa)

4.48

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 247 2.4e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 213
AccI GTMKAC 1 cut(s) 405
AccII CGCG 4 cut(s) 350, 371, 497, 554
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 3 cut(s) 116, 435, 840
AcuI CTGAAG 1 cut(s) 533
AdeI CACNNNGTG 2 cut(s) 213, 474
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 3 cut(s) 161, 213, 444
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 4 cut(s) 53, 364, 490, 750
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 3 cut(s) 178, 249, 781
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 6 cut(s) 151, 511, 665, 672, 803, 863
AluI AGCT 6 cut(s) 151, 511, 665, 672, 803, 863
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 50, 802
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 1 cut(s) 304
AoxI GGCC 4 cut(s) 116, 435, 594, 840
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 860
AspLEI GCGC 2 cut(s) 371, 554
AspS9I GGNCC 6 cut(s) 145, 176, 447, 571, 594, 778
AsuC2I CCSGG 2 cut(s) 120, 472
AsuHPI GGTGA 2 cut(s) 529, 694
AvaII GGWCC 5 cut(s) 145, 176, 447, 571, 778
BaeGI GKGCMC 2 cut(s) 104, 503
BanI GGYRCC 1 cut(s) 689
BauI CACGAG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 872
BccI CCATC 1 cut(s) 18
BceAI ACGGC 3 cut(s) 382, 703, 827
BciT130I CCWGG 3 cut(s) 180, 251, 783
BcnI CCSGG 2 cut(s) 120, 472
BcoDI GTCTC 2 cut(s) 50, 802
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 2 cut(s) 303, 586
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 5 cut(s) 335, 495, 858, 861, 875
BlsI GCNGC 5 cut(s) 336, 496, 859, 862, 876
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 5 cut(s) 120, 180, 251, 472, 783
Bme18I GGWCC 5 cut(s) 145, 176, 447, 571, 778
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 6 cut(s) 145, 176, 447, 571, 594, 778
BmiI GGNNCC 8 cut(s) 177, 328, 448, 572, 573, 595, 691, 780
BmrFI CCNGG 5 cut(s) 120, 180, 251, 472, 783
BmsI GCATC 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 120, 472
BsaAI YACGTR 1 cut(s) 812
BsaJI CCNNGG 4 cut(s) 249, 438, 504, 781
BsaWI WCCGGW 2 cut(s) 263, 449
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 213, 444
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 3 cut(s) 180, 251, 783
BseDI CCNNGG 4 cut(s) 249, 438, 504, 781
BseLI CCNNNNNNNGG 3 cut(s) 161, 213, 444
BseMII CTCAG 2 cut(s) 590, 813
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 2 cut(s) 104, 503
BseXI GCAGC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 445, 807
Bsh1236I CGCG 4 cut(s) 350, 371, 497, 554
BshFI GGCC 4 cut(s) 118, 437, 596, 842
BshNI GGYRCC 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 5 cut(s) 119, 264, 450, 471, 608
BslFI GGGAC 4 cut(s) 154, 460, 584, 764
BslI CCNNNNNNNGG 3 cut(s) 161, 213, 444
BsmAI GTCTC 2 cut(s) 50, 802
BsmFI GGGAC 4 cut(s) 154, 460, 584, 764
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 4 cut(s) 118, 437, 596, 842
Bsp1286I GDGCHC 2 cut(s) 104, 503
Bsp143I GATC 2 cut(s) 87, 296
BspANI GGCC 4 cut(s) 118, 437, 596, 842
BspCNI CTCAG 2 cut(s) 589, 812
BspFNI CGCG 4 cut(s) 350, 371, 497, 554
BspLI GGNNCC 8 cut(s) 177, 328, 448, 572, 573, 595, 691, 780
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 689
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 249, 438, 504, 781
BssMI GATC 2 cut(s) 87, 296
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 3 cut(s) 180, 251, 783
Bst4CI ACNGT 2 cut(s) 850, 882
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 6 cut(s) 339, 373, 377, 499, 556, 655
BstDEI CTNAG 2 cut(s) 576, 799
BstFNI CGCG 4 cut(s) 350, 371, 497, 554
BstHHI GCGC 2 cut(s) 371, 554
BstKTI GATC 2 cut(s) 90, 299
BstMAI GTCTC 2 cut(s) 50, 802
BstMBI GATC 2 cut(s) 87, 296
BstMWI GCNNNNNNNGC 3 cut(s) 347, 560, 874
BstNI CCWGG 3 cut(s) 180, 251, 783
BstNSI RCATGY 2 cut(s) 618, 657
BstSCI CCNGG 5 cut(s) 118, 178, 249, 470, 781
BstSFI CTRYAG 2 cut(s) 303, 586
BstSLI GKGCMC 2 cut(s) 104, 503
BstSNI TACGTA 1 cut(s) 812
BstUI CGCG 4 cut(s) 350, 371, 497, 554
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 4 cut(s) 118, 437, 596, 842
BtrI CACGTC 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 846, 878
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 6 cut(s) 339, 373, 377, 499, 556, 655
CfoI GCGC 2 cut(s) 371, 554
Cfr13I GGNCC 6 cut(s) 145, 176, 447, 571, 594, 778
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 580
CviAII CATG 3 cut(s) 424, 615, 654
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 576, 799
DpnI GATC 2 cut(s) 89, 298
DpnII GATC 2 cut(s) 87, 296
DraIII CACNNNGTG 2 cut(s) 213, 474
EaeI YGGCCR 3 cut(s) 116, 435, 840
EciI GGCGGA 1 cut(s) 250
Eco105I TACGTA 1 cut(s) 812
Eco47I GGWCC 5 cut(s) 145, 176, 447, 571, 778
Eco57I CTGAAG 1 cut(s) 533
EcoO109I RGGNCCY 4 cut(s) 176, 571, 594, 778
EcoRII CCWGG 3 cut(s) 178, 249, 781
FaeI CATG 3 cut(s) 427, 618, 657
FaqI GGGAC 4 cut(s) 154, 460, 584, 764
FatI CATG 3 cut(s) 423, 614, 653
FauI CCCGC 3 cut(s) 364, 368, 437
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 5 cut(s) 335, 495, 858, 861, 875
Fsp4HI GCNGC 5 cut(s) 335, 495, 858, 861, 875
FspBI CTAG 1 cut(s) 804
GlaI GCGC 2 cut(s) 370, 553
GluI GCNGC 5 cut(s) 335, 495, 858, 861, 875
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 4 cut(s) 118, 437, 596, 842
HapII CCGG 5 cut(s) 119, 264, 450, 471, 608
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 371, 554
Hin1II CATG 3 cut(s) 427, 618, 657
Hin6I GCGC 2 cut(s) 369, 552
HinP1I GCGC 2 cut(s) 369, 552
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 63, 165, 185, 254
HpaII CCGG 5 cut(s) 119, 264, 450, 471, 608
HphI GGTGA 2 cut(s) 529, 694
Hpy166II GTNNAC 7 cut(s) 84, 102, 273, 357, 406, 484, 809
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 7 cut(s) 84, 102, 273, 357, 406, 484, 809
Hpy99I CGWCG 5 cut(s) 82, 395, 410, 769, 836
HpyAV CCTTC 4 cut(s) 59, 508, 709, 756
HpyCH4III ACNGT 2 cut(s) 850, 882
HpyCH4IV ACGT 5 cut(s) 80, 194, 359, 393, 811
HpyCH4V TGCA 7 cut(s) 102, 137, 305, 462, 618, 653, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 560, 874
HpyF3I CTNAG 2 cut(s) 576, 799
HpySE526I ACGT 5 cut(s) 80, 194, 359, 393, 811
Hsp92II CATG 3 cut(s) 427, 618, 657
HspAI GCGC 2 cut(s) 369, 552
KflI GGGWCCC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 87, 296
LmnI GCTCC 3 cut(s) 251, 326, 508
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 1 cut(s) 810
MaeI CTAG 1 cut(s) 804
MaeII ACGT 5 cut(s) 80, 194, 359, 393, 811
MaeIII GTNAC 5 cut(s) 68, 280, 517, 527, 844
MalI GATC 2 cut(s) 89, 298
MboI GATC 2 cut(s) 87, 296
MboII GAAGA 2 cut(s) 291, 410
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 104, 503
MluCI AATT 1 cut(s) 718
MlyI GAGTC 3 cut(s) 72, 194, 248
MnlI CCTC 7 cut(s) 220, 433, 446, 514, 526, 553, 585
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 3 cut(s) 278, 428, 851
MspI CCGG 5 cut(s) 119, 264, 450, 471, 608
MspR9I CCNGG 5 cut(s) 120, 180, 251, 472, 783
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 3 cut(s) 180, 251, 783
MvnI CGCG 4 cut(s) 350, 371, 497, 554
MwoI GCNNNNNNNGC 3 cut(s) 347, 560, 874
NciI CCSGG 2 cut(s) 120, 472
NdeI CATATG 1 cut(s) 113
NdeII GATC 2 cut(s) 87, 296
NlaIII CATG 3 cut(s) 427, 618, 657
NlaIV GGNNCC 8 cut(s) 177, 328, 448, 572, 573, 595, 691, 780
NmeAIII GCCGAG 2 cut(s) 53, 463
NmuCI GTSAC 4 cut(s) 280, 517, 527, 844
NspI RCATGY 2 cut(s) 618, 657
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 5 cut(s) 336, 496, 859, 862, 876
PleI GAGTC 3 cut(s) 71, 193, 248
PpsI GAGTC 3 cut(s) 71, 193, 248
Ppu21I YACGTR 1 cut(s) 812
PpuMI RGGWCCY 3 cut(s) 176, 571, 778
Psp5II RGGWCCY 3 cut(s) 176, 571, 778
Psp6I CCWGG 3 cut(s) 178, 249, 781
PspGI CCWGG 3 cut(s) 178, 249, 781
PspN4I GGNNCC 8 cut(s) 177, 328, 448, 572, 573, 595, 691, 780
PspPI GGNCC 6 cut(s) 145, 176, 447, 571, 594, 778
PspPPI RGGWCCY 3 cut(s) 176, 571, 778
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 3 cut(s) 278, 428, 851
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 5 cut(s) 335, 495, 858, 861, 875
Sau3AI GATC 2 cut(s) 87, 296
Sau96I GGNCC 6 cut(s) 145, 176, 447, 571, 594, 778
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 3 cut(s) 72, 194, 248
ScrFI CCNGG 5 cut(s) 120, 180, 251, 472, 783
SduI GDGCHC 2 cut(s) 104, 503
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 2 cut(s) 303, 586
SinI GGWCC 5 cut(s) 145, 176, 447, 571, 778
SmiMI CAYNNNNRTG 3 cut(s) 278, 428, 851
SnaBI TACGTA 1 cut(s) 812
SphI GCATGC 1 cut(s) 657
Sse9I AATT 1 cut(s) 718
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 5 cut(s) 118, 178, 249, 470, 781
TaaI ACNGT 2 cut(s) 850, 882
TaiI ACGT 5 cut(s) 83, 197, 362, 396, 814
TaqI TCGA 5 cut(s) 131, 309, 405, 767, 792
TasI AATT 1 cut(s) 718
TatI WGTACW 1 cut(s) 579
TauI GCSGC 4 cut(s) 337, 497, 860, 877
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 853, 885
TseFI GTSAC 4 cut(s) 280, 517, 527, 844
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 4 cut(s) 280, 517, 527, 844
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 853, 885
Van91I CCANNNNNTGG 1 cut(s) 213
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 5 cut(s) 145, 176, 447, 571, 778
XceI RCATGY 2 cut(s) 618, 657
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 475
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.