FvH4_1g11720

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009846
Physical Location & Seq
Reverse (-)
6406017 .. 6408185
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11720.t1

Sequence Viewer

Length: 891 bp
ATGGCTTTCACTCGATTCTCCAAGCTCGTAGTCGCTCTCGGTCTCGTTCACTTCATTTCAGGTGGTTACTCGGCGACGTTTACGATTACAAACAAGTGCAGCAACACGATTTGGCCCGGCATTTTGTCAAACGCCGGGACAGACCAGCTTTCGACTACCGGGTTTATGTTACAACCCGGGGAGTCGAGCTCGATTGCCGTCCCGGCCGCTTGGTCGGGTCGTTTATGGGGGCGGAGTCTCTGCTCGCAGGACCCGACCACAGGGAAGTTTAGTTGCGTTACGGGAGATTGTGGCTCCGGTACTGTAGAGTGTTCCGGAGGAGGAGCGGCGCCTCCGGCAAGTCTGGCGGAGTTCACCCTTAACGGAGCGAACGGGCTGGACTTTTACGACGTCAGCCTCGTGGACGGGTACAACCTCCCAATGTTGGTTGAGCCCCAGGGAGGTACCGGAGGCAACTGCACCACCACAGGCTGCGTTGTGGACCTCAACGCCGGGTGTCCATCGGAGCTGAAGGTCACGACGGCGAATGACGGCGGCGTGGCGTGTAAAAGCGCGTGCGAGGCCTTTGGGGATCCCATGTATTGCTGTAGTGGAGCTTACGCGACTCCTGACACCTGCACACCCAGCTCGTACTCGCAGTTCTTTAAAAATGCGTGCCCTAAAGCTTACAGCTATGCCTATGACGACGGCACCAGCACCTTCACTTGTGCCGCCGCCGACTACCTCATCACTTTCTGCCCTTCCCCCGCCACCAGTGTGAAGTCGGCAAATAATGGCCAATTCCCTGTGGCGGCCGGCGTCTCATCCGGTTCACGTCGTTCGATACCAAACGTCGTCGTTTTCGTCACCGTCTTGGCGGCAGTTTGGCGGTTGCTGCCACCGCTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

297

Amino Acids

30.44

Weight (kDa)

4.77

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 8.7e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 623
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 3 cut(s) 328, 443, 689
AccBSI CCGCTC 1 cut(s) 326
AccII CGCG 2 cut(s) 554, 602
AccIII TCCGGA 1 cut(s) 314
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 3 cut(s) 204, 775, 792
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 3 cut(s) 329, 390, 798
AfaI GTAC 4 cut(s) 301, 410, 445, 632
AfiI CCNNNNNNNGG 4 cut(s) 260, 424, 440, 790
AjiI CACGTC 1 cut(s) 815
AjnI CCWGG 1 cut(s) 435
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 8 cut(s) 25, 148, 189, 508, 596, 627, 665, 672
AluI AGCT 8 cut(s) 25, 148, 189, 508, 596, 627, 665, 672
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 3 cut(s) 47, 242, 805
AlwI GGATC 2 cut(s) 566, 579
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 5 cut(s) 113, 204, 561, 775, 792
ApeKI GCWGC 3 cut(s) 99, 471, 874
Asp718I GGTACC 1 cut(s) 443
AspLEI GCGC 2 cut(s) 331, 554
AspS9I GGNCC 3 cut(s) 114, 250, 481
AsuC2I CCSGG 7 cut(s) 117, 136, 160, 177, 178, 203, 493
AsuHPI GGTGA 2 cut(s) 346, 838
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 250, 481
BaeGI GKGCMC 1 cut(s) 659
BalI TGGCCA 1 cut(s) 777
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 3 cut(s) 328, 443, 689
BanII GRGCYC 2 cut(s) 191, 435
BauI CACGAG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 111, 458, 861
BccI CCATC 1 cut(s) 508
BceAI ACGGC 4 cut(s) 182, 537, 547, 703
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 7 cut(s) 117, 136, 160, 177, 178, 203, 493
BcoDI GTCTC 3 cut(s) 47, 242, 805
BfmI CTRYAG 2 cut(s) 303, 586
BfoI RGCGCY 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 623
BglI GCCNNNNNGGC 1 cut(s) 203
Bme1390I CCNGG 8 cut(s) 117, 136, 160, 177, 178, 203, 437, 493
Bme18I GGWCC 2 cut(s) 250, 481
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 815
BmgT120I GGNCC 3 cut(s) 114, 250, 481
BmiI GGNNCC 6 cut(s) 252, 295, 330, 445, 573, 691
BmrFI CCNGG 8 cut(s) 117, 136, 160, 177, 178, 203, 437, 493
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 7 cut(s) 117, 136, 160, 177, 178, 203, 493
BsaHI GRCGYC 3 cut(s) 329, 390, 798
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 4 cut(s) 176, 177, 435, 436
BsaWI WCCGGW 4 cut(s) 296, 314, 446, 806
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 424, 440, 790
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 176, 177, 435, 436
BseGI GGATG 1 cut(s) 803
BseLI CCNNNNNNNGG 4 cut(s) 260, 424, 440, 790
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 333, 336
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 2 cut(s) 204, 792
BseXI GCAGC 3 cut(s) 111, 458, 861
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 3 cut(s) 118, 442, 601
Bsh1236I CGCG 2 cut(s) 554, 602
Bsh1285I CGRYCG 2 cut(s) 207, 795
BshFI GGCC 5 cut(s) 115, 206, 563, 777, 794
BshNI GGYRCC 3 cut(s) 328, 443, 689
BsiEI CGRYCG 2 cut(s) 207, 795
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 151, 185
BslI CCNNNNNNNGG 4 cut(s) 260, 424, 440, 790
BsmAI GTCTC 3 cut(s) 47, 242, 805
BsmBI CGTCTC 1 cut(s) 805
BsmFI GGGAC 2 cut(s) 151, 185
BsnI GGCC 5 cut(s) 115, 206, 563, 777, 794
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 191, 435, 659
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 1 cut(s) 571
BspANI GGCC 5 cut(s) 115, 206, 563, 777, 794
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 2 cut(s) 554, 602
BspLI GGNNCC 6 cut(s) 252, 295, 330, 445, 573, 691
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 566, 579
BspT107I GGYRCC 3 cut(s) 328, 443, 689
BspTNI GGTCTC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 4 cut(s) 176, 177, 435, 436
BssMI GATC 1 cut(s) 571
BssNI GRCGYC 3 cut(s) 329, 390, 798
BssSI CACGAG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 2 cut(s) 304, 850
BstACI GRCGYC 3 cut(s) 329, 390, 798
BstC8I GCNNGC 4 cut(s) 245, 556, 655, 796
BstF5I GGATG 1 cut(s) 803
BstFNI CGCG 2 cut(s) 554, 602
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 331, 554
BstKTI GATC 1 cut(s) 574
BstMAI GTCTC 3 cut(s) 47, 242, 805
BstMBI GATC 1 cut(s) 571
BstMCI CGRYCG 2 cut(s) 207, 795
BstMWI GCNNNNNNNGC 7 cut(s) 203, 335, 344, 560, 624, 874, 880
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 8 cut(s) 115, 134, 158, 175, 176, 201, 435, 491
BstSFI CTRYAG 2 cut(s) 303, 586
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 2 cut(s) 554, 602
BstV1I GCAGC 3 cut(s) 111, 458, 861
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BstZI CGGCCG 2 cut(s) 204, 792
BsuRI GGCC 5 cut(s) 115, 206, 563, 777, 794
BtrI CACGTC 1 cut(s) 815
BtsCI GGATG 1 cut(s) 803
BtsIMutI CAGTG 1 cut(s) 760
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 4 cut(s) 245, 556, 655, 796
CfoI GCGC 2 cut(s) 331, 554
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 3 cut(s) 114, 250, 481
Cfr9I CCCGGG 1 cut(s) 176
CseI GACGC 1 cut(s) 787
Csp6I GTAC 4 cut(s) 300, 409, 444, 631
CviAII CATG 1 cut(s) 577
CviQI GTAC 4 cut(s) 300, 409, 444, 631
DinI GGCGCC 1 cut(s) 330
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 3 cut(s) 204, 775, 792
EagI CGGCCG 2 cut(s) 204, 792
EciI GGCGGA 2 cut(s) 247, 362
Ecl136II GAGCTC 1 cut(s) 189
EclXI CGGCCG 2 cut(s) 204, 792
Eco147I AGGCCT 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 191, 435
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 250, 481
Eco52I CGGCCG 2 cut(s) 204, 792
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 435
EcoT38I GRGCYC 2 cut(s) 191, 435
EgeI GGCGCC 1 cut(s) 330
EheI GGCGCC 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 805
FaeI CATG 1 cut(s) 580
FaiI YATR 5 cut(s) 167, 226, 578, 675, 681
FaqI GGGAC 2 cut(s) 151, 185
FatI CATG 1 cut(s) 576
FauI CCCGC 1 cut(s) 754
FokI GGATG 1 cut(s) 790
FriOI GRGCYC 2 cut(s) 191, 435
GlaI GCGC 2 cut(s) 330, 553
GsaI CCCAGC 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 5 cut(s) 115, 206, 563, 777, 794
HgaI GACGC 1 cut(s) 787
HhaI GCGC 2 cut(s) 331, 554
Hin1I GRCGYC 3 cut(s) 329, 390, 798
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 2 cut(s) 329, 552
HinP1I GCGC 2 cut(s) 329, 552
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 15, 182, 235, 604
HphI GGTGA 2 cut(s) 346, 838
Hpy166II GTNNAC 6 cut(s) 49, 81, 354, 403, 481, 812
Hpy188I TCNGA 2 cut(s) 505, 890
Hpy188III TCNNGA 3 cut(s) 315, 517, 608
Hpy8I GTNNAC 6 cut(s) 49, 81, 354, 403, 481, 812
Hpy99I CGWCG 7 cut(s) 79, 392, 523, 689, 819, 836, 839
HpyAV CCTTC 3 cut(s) 505, 709, 750
HpyCH4III ACNGT 2 cut(s) 304, 850
HpyCH4IV ACGT 4 cut(s) 77, 390, 814, 831
HpyCH4V TGCA 3 cut(s) 99, 459, 618
HpyF10VI GCNNNNNNNGC 7 cut(s) 203, 335, 344, 560, 624, 874, 880
HpySE526I ACGT 4 cut(s) 77, 390, 814, 831
Hsp92I GRCGYC 3 cut(s) 329, 390, 798
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 2 cut(s) 329, 552
KasI GGCGCC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 314
KpnI GGTACC 1 cut(s) 447
KroI GCCGGC 1 cut(s) 794
KroNI GCCGGC 1 cut(s) 796
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 5 cut(s) 299, 323, 365, 505, 593
Lsp1109I GCAGC 3 cut(s) 111, 458, 861
MaeII ACGT 4 cut(s) 77, 390, 814, 831
MaeIII GTNAC 5 cut(s) 65, 168, 277, 514, 844
MalI GATC 1 cut(s) 573
MbiI CCGCTC 1 cut(s) 326
MboI GATC 1 cut(s) 571
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 3 cut(s) 191, 435, 659
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 1 cut(s) 779
MluNI TGGCCA 1 cut(s) 777
Mly113I GGCGCC 1 cut(s) 329
MlyI GAGTC 3 cut(s) 191, 244, 598
Mox20I TGGCCA 1 cut(s) 777
MroI TCCGGA 1 cut(s) 314
MroNI GCCGGC 1 cut(s) 794
MscI TGGCCA 1 cut(s) 777
MseI TTAA 2 cut(s) 360, 645
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 777
MspR9I CCNGG 8 cut(s) 117, 136, 160, 177, 178, 203, 437, 493
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 2 cut(s) 554, 602
MwoI GCNNNNNNNGC 7 cut(s) 203, 335, 344, 560, 624, 874, 880
NaeI GCCGGC 1 cut(s) 796
NarI GGCGCC 1 cut(s) 329
NciI CCSGG 7 cut(s) 117, 136, 160, 177, 178, 203, 493
NdeII GATC 1 cut(s) 571
NgoMIV GCCGGC 1 cut(s) 794
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 6 cut(s) 252, 295, 330, 445, 573, 691
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 514, 844
OliI CACNNNNGTG 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 623
PasI CCCWGGG 1 cut(s) 436
PceI AGGCCT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 3 cut(s) 251, 396, 840
PdiI GCCGGC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 15
PleI GAGTC 3 cut(s) 190, 243, 598
PluTI GGCGCC 1 cut(s) 332
PpsI GAGTC 3 cut(s) 190, 243, 598
PpuMI RGGWCCY 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 6 cut(s) 252, 295, 330, 445, 573, 691
PspPI GGNCC 3 cut(s) 114, 250, 481
PspPPI RGGWCCY 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 4 cut(s) 301, 410, 445, 632
RsaNI GTAC 4 cut(s) 300, 409, 444, 631
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 360, 645
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 3 cut(s) 114, 250, 481
SchI GAGTC 3 cut(s) 191, 244, 598
ScrFI CCNGG 8 cut(s) 117, 136, 160, 177, 178, 203, 437, 493
SduI GDGCHC 3 cut(s) 191, 435, 659
SfcI CTRYAG 2 cut(s) 303, 586
SfoI GGCGCC 1 cut(s) 330
SinI GGWCC 2 cut(s) 250, 481
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 1 cut(s) 779
SseBI AGGCCT 1 cut(s) 563
SspDI GGCGCC 1 cut(s) 328
SstI GAGCTC 1 cut(s) 191
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 8 cut(s) 115, 134, 158, 175, 176, 201, 435, 491
TaaI ACNGT 2 cut(s) 304, 850
TaiI ACGT 4 cut(s) 80, 393, 817, 834
TaqI TCGA 5 cut(s) 13, 152, 185, 191, 821
TaqII GACCGA 1 cut(s) 29
TasI AATT 1 cut(s) 779
TauI GCSGC 7 cut(s) 209, 329, 537, 713, 716, 794, 860
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 360, 645
Tru9I TTAA 2 cut(s) 360, 645
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 2 cut(s) 514, 844
TseI GCWGC 3 cut(s) 99, 471, 874
Tsp45I GTSAC 2 cut(s) 514, 844
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 378
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 250, 481
XmaI CCCGGG 1 cut(s) 176
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.