Rh2DG132600

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009846
Physical Location & Seq
Reverse (-)
11160531 .. 11162540
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG132600.1

Sequence Viewer

Length: 792 bp
ATGGCTTTCAGTCGATTTTCAAAGCTCGTGGTCTCTCTGTGTCTCATTCACTTCATTTCAGGTGGTTACTCGGCAACGTTTACGATTACAAACAAGTGCAGCAACACAATTTGGCCGGGCATTTTGTCAAACGCCGGGACGGCGCAGCTTTCTACTACCGGGTTTGCTTTACAATCCGGAGAGTCTAGCTCGATAGCCGTTCCGGCCTCGTGGTCGGGTAGGCTATGGGGGCGGACTCTGTGCTCTCAGGACCCGACCACGGGAAAGTTCAGTTGCGTTACGGGAGATTGTGGCTCGGGTACTGTCGAGTGTGCCGGAGGTGGAGCTGCGCCTCCGGCAAGTCTGGCTGAGTTTACCCTGAACGGAGCGGACGGGCTGGACTTCTACGACGTCAGCCTCGTGGACGGATACAACCTGCCCATGTTGGTCGTGCCCCAGGGCGGGACCGGAGGCAACTGCACCACCACAGGCTGCGTCGTAGACCTCAACGCCGGGTGTCCGTCGGAGCTGAAGGTGACCACGGCGAGTGACGGTGGCGTGGCGTGTAAAAGCGCGTGCGAGGCGTTTGGGGATCCCATGTACTGCTGCAGTGGGGCGTACGCGACCCCTGACACCTGCAAACCCAGCTCGTACTCTCAGTTCTTTAAAAATGCGTGCCCCAAAGCTTACAGCTACGCCTATGACGACGGCACCAGCACCTTCACTTGTGCCGCCGCCGACTACCTCATCACTTTCTGCCCTGCCCCCGCCACCAGTATTGCACTACGAGTTGCACCGTCCTTACTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

263

Amino Acids

26.91

Weight (kDa)

4.6

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 1.2e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 423, 623
AccB1I GGYRCC 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 480
AccII CGCG 2 cut(s) 554, 602
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 6 cut(s) 232, 368, 441, 711, 714, 747
AclI AACGTT 1 cut(s) 77
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 4 cut(s) 301, 581, 599, 632
AfiI CCNNNNNNNGG 4 cut(s) 259, 260, 440, 441
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 8 cut(s) 25, 148, 189, 326, 508, 627, 665, 672
AluI AGCT 8 cut(s) 25, 148, 189, 326, 508, 627, 665, 672
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 37, 47
AlwI GGATC 2 cut(s) 566, 579
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 2 cut(s) 113, 204
ApeKI GCWGC 5 cut(s) 99, 145, 326, 471, 585
AspLEI GCGC 3 cut(s) 145, 331, 554
AspS9I GGNCC 2 cut(s) 250, 444
AsuC2I CCSGG 4 cut(s) 117, 136, 160, 493
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 2 cut(s) 250, 444
BaeGI GKGCMC 2 cut(s) 435, 659
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 689
BauI CACGAG 3 cut(s) 26, 208, 398
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 111, 157, 313, 458, 572
BceAI ACGGC 4 cut(s) 156, 182, 537, 703
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 4 cut(s) 117, 136, 160, 493
BcoDI GTCTC 2 cut(s) 37, 47
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 586
BfuAI ACCTGC 2 cut(s) 423, 623
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 2 cut(s) 140, 203
BisI GCNGC 7 cut(s) 100, 146, 327, 472, 586, 711, 714
BlsI GCNGC 7 cut(s) 101, 147, 328, 473, 587, 712, 715
Bme1390I CCNGG 5 cut(s) 117, 136, 160, 437, 493
Bme18I GGWCC 2 cut(s) 250, 444
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 250, 444
BmiI GGNNCC 4 cut(s) 252, 445, 573, 691
BmrFI CCNGG 5 cut(s) 117, 136, 160, 437, 493
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 4 cut(s) 117, 136, 160, 493
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 4 cut(s) 258, 435, 436, 519
BsaWI WCCGGW 2 cut(s) 176, 446
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 260, 440, 441
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 258, 435, 436, 519
BseLI CCNNNNNNNGG 4 cut(s) 259, 260, 440, 441
BseMII CTCAG 3 cut(s) 260, 339, 650
BseNI ACTGG 1 cut(s) 753
BseSI GKGCMC 2 cut(s) 435, 659
BseXI GCAGC 5 cut(s) 111, 157, 313, 458, 572
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 2 cut(s) 118, 442
Bsh1236I CGCG 2 cut(s) 554, 602
BshFI GGCC 2 cut(s) 115, 206
BshNI GGYRCC 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 9 cut(s) 116, 135, 159, 177, 203, 315, 335, 447, 492
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 2 cut(s) 151, 457
BslI CCNNNNNNNGG 4 cut(s) 259, 260, 440, 441
BsmAI GTCTC 2 cut(s) 37, 47
BsmFI GGGAC 2 cut(s) 151, 457
BsnI GGCC 2 cut(s) 115, 206
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 245, 435, 659
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 1 cut(s) 571
BspACI CCGC 6 cut(s) 232, 368, 441, 711, 714, 747
BspANI GGCC 2 cut(s) 115, 206
BspCNI CTCAG 3 cut(s) 259, 340, 649
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 2 cut(s) 554, 602
BspLI GGNNCC 4 cut(s) 252, 445, 573, 691
BspMAI CTGCAG 1 cut(s) 590
BspMI ACCTGC 2 cut(s) 423, 623
BspPI GGATC 2 cut(s) 566, 579
BspT107I GGYRCC 1 cut(s) 689
BspTNI GGTCTC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 753
BssECI CCNNGG 4 cut(s) 258, 435, 436, 519
BssMI GATC 1 cut(s) 571
BssNI GRCGYC 1 cut(s) 390
BssSI CACGAG 3 cut(s) 26, 208, 398
Bst2BI CACGAG 3 cut(s) 26, 208, 398
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 304, 533, 777
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 556, 655
BstDEI CTNAG 3 cut(s) 246, 348, 636
BstDSI CCRYGG 2 cut(s) 258, 519
BstEII GGTNACC 1 cut(s) 514
BstFNI CGCG 2 cut(s) 554, 602
BstHHI GCGC 3 cut(s) 145, 331, 554
BstKTI GATC 1 cut(s) 574
BstMAI GTCTC 2 cut(s) 37, 47
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 7 cut(s) 140, 203, 229, 335, 344, 560, 624
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 5 cut(s) 115, 134, 158, 435, 491
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 2 cut(s) 435, 659
BstUI CGCG 2 cut(s) 554, 602
BstV1I GCAGC 5 cut(s) 111, 157, 313, 458, 572
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 2 cut(s) 115, 206
BtgI CCRYGG 2 cut(s) 258, 519
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 595
BveI ACCTGC 2 cut(s) 423, 623
Cac8I GCNNGC 2 cut(s) 556, 655
CfoI GCGC 3 cut(s) 145, 331, 554
Cfr13I GGNCC 2 cut(s) 250, 444
CseI GACGC 1 cut(s) 463
Csp6I GTAC 4 cut(s) 300, 580, 598, 631
CspCI CAANNNNNGTGG 4 cut(s) 9, 44, 739, 774
CviAII CATG 2 cut(s) 421, 577
CviQI GTAC 4 cut(s) 300, 580, 598, 631
DdeI CTNAG 3 cut(s) 246, 348, 636
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 113
EciI GGCGGA 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 250, 444
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 424, 580
FaiI YATR 4 cut(s) 226, 422, 578, 681
FaqI GGGAC 2 cut(s) 151, 457
FatI CATG 2 cut(s) 420, 576
FauI CCCGC 2 cut(s) 434, 754
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 7 cut(s) 100, 146, 327, 472, 586, 711, 714
Fsp4HI GCNGC 7 cut(s) 100, 146, 327, 472, 586, 711, 714
FspBI CTAG 1 cut(s) 186
GlaI GCGC 3 cut(s) 144, 330, 553
GluI GCNGC 7 cut(s) 100, 146, 327, 472, 586, 711, 714
GsaI CCCAGC 1 cut(s) 627
HaeIII GGCC 2 cut(s) 115, 206
HapII CCGG 9 cut(s) 116, 135, 159, 177, 203, 315, 335, 447, 492
HgaI GACGC 1 cut(s) 463
HhaI GCGC 3 cut(s) 145, 331, 554
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 424, 580
Hin6I GCGC 3 cut(s) 143, 329, 552
HinP1I GCGC 3 cut(s) 143, 329, 552
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 2 cut(s) 182, 235
HpaII CCGG 9 cut(s) 116, 135, 159, 177, 203, 315, 335, 447, 492
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 4 cut(s) 81, 354, 403, 481
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 2 cut(s) 177, 248
Hpy8I GTNNAC 4 cut(s) 81, 354, 403, 481
Hpy99I CGWCG 4 cut(s) 392, 479, 505, 689
HpyAV CCTTC 2 cut(s) 505, 709
HpyCH4III ACNGT 3 cut(s) 304, 533, 777
HpyCH4IV ACGT 2 cut(s) 77, 390
HpyCH4V TGCA 6 cut(s) 99, 459, 588, 618, 761, 773
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 203, 229, 335, 344, 560, 624
HpyF3I CTNAG 3 cut(s) 246, 348, 636
HpySE526I ACGT 2 cut(s) 77, 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 424, 580
HspAI GCGC 3 cut(s) 143, 329, 552
Kpn2I TCCGGA 1 cut(s) 176
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 3 cut(s) 323, 365, 505
Lsp1109I GCAGC 5 cut(s) 111, 157, 313, 458, 572
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 77, 390
MaeIII GTNAC 4 cut(s) 65, 277, 514, 527
MalI GATC 1 cut(s) 573
MbiI CCGCTC 1 cut(s) 368
MboI GATC 1 cut(s) 571
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 3 cut(s) 245, 435, 659
MluCI AATT 1 cut(s) 108
MlyI GAGTC 2 cut(s) 191, 229
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 8 cut(s) 217, 311, 342, 407, 443, 494, 553, 734
MroI TCCGGA 1 cut(s) 176
MseI TTAA 1 cut(s) 645
MspI CCGG 9 cut(s) 116, 135, 159, 177, 203, 315, 335, 447, 492
MspR9I CCNGG 5 cut(s) 117, 136, 160, 437, 493
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 2 cut(s) 554, 602
MwoI GCNNNNNNNGC 7 cut(s) 140, 203, 229, 335, 344, 560, 624
NciI CCSGG 4 cut(s) 117, 136, 160, 493
NdeII GATC 1 cut(s) 571
NlaIII CATG 2 cut(s) 424, 580
NlaIV GGNNCC 4 cut(s) 252, 445, 573, 691
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 514, 527
PaqCI CACCTGC 1 cut(s) 623
PasI CCCWGGG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 681
Pfl23II CGTACG 1 cut(s) 597
PkrI GCNGC 7 cut(s) 101, 147, 328, 473, 587, 712, 715
PleI GAGTC 2 cut(s) 190, 229
PpsI GAGTC 2 cut(s) 190, 229
PpuMI RGGWCCY 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 435
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 4 cut(s) 252, 445, 573, 691
PspPI GGNCC 2 cut(s) 250, 444
PspPPI RGGWCCY 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PstI CTGCAG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 4 cut(s) 301, 581, 599, 632
RsaNI GTAC 4 cut(s) 300, 580, 598, 631
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 7 cut(s) 100, 146, 327, 472, 586, 711, 714
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 2 cut(s) 250, 444
SchI GAGTC 2 cut(s) 191, 229
ScrFI CCNGG 5 cut(s) 117, 136, 160, 437, 493
SduI GDGCHC 3 cut(s) 245, 435, 659
SfcI CTRYAG 1 cut(s) 586
SinI GGWCC 2 cut(s) 250, 444
Sse9I AATT 1 cut(s) 108
SsiI CCGC 6 cut(s) 232, 368, 441, 711, 714, 747
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 5 cut(s) 115, 134, 158, 435, 491
TaaI ACNGT 3 cut(s) 304, 533, 777
TaiI ACGT 2 cut(s) 80, 393
TaqI TCGA 3 cut(s) 13, 191, 306
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 713, 716
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 514, 527
TseI GCWGC 5 cut(s) 99, 145, 326, 471, 585
Tsp45I GTSAC 2 cut(s) 514, 527
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 3 cut(s) 378, 420, 489
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 250, 444
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.