MD02G1130400.v1.1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009846
Physical Location & Seq
Reverse (-)
10507694 .. 10517646
9953 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1130400.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGCTTCCCATCAAGTTTTTTCATCCTTCCTTTTCCTTCTCTGTCTCCTTCAATCCATGAGAGTCGGCTACCCGGCGACGTTCACCATCGCAAACAAGTGCACCACCACCATATGGCCGGCCATTCTGTCTAATGCCGGGACTTACCAGCGACCGGCCACCACTGGATTCGCTTTGCCTCCTGGAGAGTCCAACACGTTTTCCGTCCCCACCTCGTGGTCCGGTAGGTTATGGGGGCGAACGCTCTGCTCCCAAGACTCAACCACAGGCAACTTCACTTGCTTGACAGGCGACTGCGGATCTTCGGCAGTCGAATGTGCTGGCGGTGGAGCCGCGCCGCCGGCTACTCTCGCAGAGTTCACGCTGAACGGTACGGGTGGGCTTGATTTCTACGACGTGAGCTTGGTCGATGGGTATAATCTTCCCATGTTGGTGCTAGTGGTGGCCGAGGGCGGGACCGGAGGGAACTGCACGACCACCGGGTGCGTGGTGGACTTGAACAACGGGTGCCCCTCGGAGCTGAAGGTGACGGCGAGTGACGAGGGCGTGGCGTGTAAAAGCGCGTGCGAGGCGTTTGGGGAGCCGCAGTACTGCTGTAGCGGCGCCTACGCTACGCCGGACACATGCAAGCCGAGTTCTTATTCGCAGTTTTTTAAAAATGCGTGCCCGAAAGCTTACAGCTATGCGTATGACGACGGCACCAGCACCTTCACCTGTGCTTCCGCCAATTACATCATCACTTTCTGCCCTGCTCCTTCGACCAGTGTGAAGTCGTCGAATGGGACAGTCCCTGGTGCAGTCGGTGTCTCAGCTAGTTTACGTAATACAACTCCCAACATCGTCGTTTTCGCCGTCACTGTTATGGCGGCGGCTTGGCGGTGGCTGCCGCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

299

Amino Acids

30.97

Weight (kDa)

4.79

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 250 9e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 507, 602, 698
AccB7I CCANNNNNTGG 2 cut(s) 114, 216
AccII CGCG 2 cut(s) 335, 563
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 4 cut(s) 116, 120, 156, 444
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 603
AdeI CACNNNGTG 2 cut(s) 216, 483
AfaI GTAC 2 cut(s) 373, 590
AfiI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 453
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 53, 499
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 181, 790
AluBI AGCT 5 cut(s) 402, 520, 674, 681, 812
AluI AGCT 5 cut(s) 402, 520, 674, 681, 812
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 50, 811
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 4 cut(s) 116, 120, 156, 444
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 883
AspLEI GCGC 3 cut(s) 337, 563, 605
AspS9I GGNCC 2 cut(s) 219, 456
AsuC2I CCSGG 3 cut(s) 74, 139, 481
AsuHPI GGTGA 3 cut(s) 76, 538, 703
AvaII GGWCC 2 cut(s) 219, 456
BaeGI GKGCMC 3 cut(s) 104, 512, 668
BanI GGYRCC 3 cut(s) 507, 602, 698
BauI CACGAG 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 870
BccI CCATC 3 cut(s) 18, 95, 404
BceAI ACGGC 3 cut(s) 546, 712, 836
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 2 cut(s) 183, 792
BcnI CCSGG 3 cut(s) 74, 139, 481
BcoDI GTCTC 2 cut(s) 50, 811
BfaI CTAG 2 cut(s) 437, 813
BfmI CTRYAG 1 cut(s) 595
BfoI RGCGCY 1 cut(s) 606
BisI GCNGC 8 cut(s) 333, 338, 584, 601, 867, 870, 884, 887
BlsI GCNGC 8 cut(s) 334, 339, 585, 602, 868, 871, 885, 888
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 5 cut(s) 74, 139, 183, 481, 792
Bme18I GGWCC 2 cut(s) 219, 456
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 219, 456
BmiI GGNNCC 6 cut(s) 331, 457, 509, 582, 604, 700
BmrFI CCNGG 5 cut(s) 74, 139, 183, 481, 792
BpmI CTGGAG 1 cut(s) 204
BpuMI CCSGG 3 cut(s) 74, 139, 481
BsaAI YACGTR 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 3 cut(s) 447, 513, 790
BsaWI WCCGGW 2 cut(s) 221, 458
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 154, 216, 453
Bse118I RCCGGY 3 cut(s) 118, 154, 340
Bse1I ACTGG 2 cut(s) 169, 762
BseBI CCWGG 2 cut(s) 183, 792
BseDI CCNNGG 3 cut(s) 447, 513, 790
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 453
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 169, 762
BseSI GKGCMC 3 cut(s) 104, 512, 668
BseXI GCAGC 1 cut(s) 870
BsgI GTGCAG 2 cut(s) 454, 816
Bsh1236I CGCG 2 cut(s) 335, 563
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 4 cut(s) 118, 122, 158, 446
BshNI GGYRCC 3 cut(s) 507, 602, 698
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 9 cut(s) 74, 119, 138, 155, 222, 341, 459, 480, 617
BslFI GGGAC 5 cut(s) 154, 191, 469, 773, 796
BslI CCNNNNNNNGG 4 cut(s) 114, 154, 216, 453
BsmAI GTCTC 2 cut(s) 50, 811
BsmFI GGGAC 5 cut(s) 154, 191, 469, 773, 796
BsnI GGCC 4 cut(s) 118, 122, 158, 446
Bsp1286I GDGCHC 3 cut(s) 104, 512, 668
Bsp143I GATC 1 cut(s) 299
BspANI GGCC 4 cut(s) 118, 122, 158, 446
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 2 cut(s) 335, 563
BspLI GGNNCC 6 cut(s) 331, 457, 509, 582, 604, 700
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 3 cut(s) 507, 602, 698
BsrFI RCCGGY 3 cut(s) 118, 154, 340
BsrI ACTGG 2 cut(s) 169, 762
BssAI RCCGGY 3 cut(s) 118, 154, 340
BssECI CCNNGG 3 cut(s) 447, 513, 790
BssMI GATC 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 183, 792
Bst4CI ACNGT 3 cut(s) 371, 787, 859
BstACI GRCGYC 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 6 cut(s) 120, 322, 342, 565, 629, 664
BstDEI CTNAG 1 cut(s) 808
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 2 cut(s) 335, 563
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 3 cut(s) 337, 563, 605
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 2 cut(s) 50, 811
BstMBI GATC 1 cut(s) 299
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 6 cut(s) 288, 341, 350, 569, 600, 883
BstNI CCWGG 2 cut(s) 183, 792
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 5 cut(s) 72, 137, 181, 479, 790
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 3 cut(s) 104, 512, 668
BstSNI TACGTA 1 cut(s) 821
BstUI CGCG 2 cut(s) 335, 563
BstV1I GCAGC 1 cut(s) 870
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 4 cut(s) 118, 122, 158, 446
BtgZI GCGATG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 3 cut(s) 162, 769, 855
Cac8I GCNNGC 6 cut(s) 120, 322, 342, 565, 629, 664
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 3 cut(s) 337, 563, 605
Cfr10I RCCGGY 3 cut(s) 118, 154, 340
Cfr13I GGNCC 2 cut(s) 219, 456
Csp6I GTAC 2 cut(s) 372, 589
CviAII CATG 3 cut(s) 58, 427, 624
CviQI GTAC 2 cut(s) 372, 589
DdeI CTNAG 1 cut(s) 808
DinI GGCGCC 1 cut(s) 604
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
DraI TTTAAA 1 cut(s) 655
DraIII CACNNNGTG 2 cut(s) 216, 483
EaeI YGGCCR 4 cut(s) 116, 120, 156, 444
EciI GGCGGA 1 cut(s) 712
Eco105I TACGTA 1 cut(s) 821
Eco47I GGWCC 2 cut(s) 219, 456
Eco57I CTGAAG 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 181, 790
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
FaeI CATG 3 cut(s) 61, 430, 627
FaqI GGGAC 5 cut(s) 154, 191, 469, 773, 796
FatI CATG 3 cut(s) 57, 426, 623
FauI CCCGC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 113
Fnu4HI GCNGC 8 cut(s) 333, 338, 584, 601, 867, 870, 884, 887
FokI GGATG 1 cut(s) 10
FseI GGCCGGCC 1 cut(s) 122
Fsp4HI GCNGC 8 cut(s) 333, 338, 584, 601, 867, 870, 884, 887
FspBI CTAG 2 cut(s) 437, 813
GlaI GCGC 3 cut(s) 336, 562, 604
GluI GCNGC 8 cut(s) 333, 338, 584, 601, 867, 870, 884, 887
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 4 cut(s) 118, 122, 158, 446
HapII CCGG 9 cut(s) 74, 119, 138, 155, 222, 341, 459, 480, 617
HhaI GCGC 3 cut(s) 337, 563, 605
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 3 cut(s) 61, 430, 627
Hin6I GCGC 3 cut(s) 335, 561, 603
HinP1I GCGC 3 cut(s) 335, 561, 603
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 4 cut(s) 63, 168, 188, 257
HpaII CCGG 9 cut(s) 74, 119, 138, 155, 222, 341, 459, 480, 617
HphI GGTGA 3 cut(s) 76, 538, 703
Hpy166II GTNNAC 5 cut(s) 84, 102, 360, 493, 818
Hpy188I TCNGA 1 cut(s) 517
Hpy8I GTNNAC 5 cut(s) 84, 102, 360, 493, 818
Hpy99I CGWCG 5 cut(s) 82, 398, 698, 778, 845
HpyAV CCTTC 6 cut(s) 37, 47, 59, 517, 718, 765
HpyCH4III ACNGT 3 cut(s) 371, 787, 859
HpyCH4IV ACGT 4 cut(s) 80, 197, 396, 820
HpyCH4V TGCA 4 cut(s) 102, 471, 627, 797
HpyF10VI GCNNNNNNNGC 6 cut(s) 288, 341, 350, 569, 600, 883
HpyF3I CTNAG 1 cut(s) 808
HpySE526I ACGT 4 cut(s) 80, 197, 396, 820
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 3 cut(s) 61, 430, 627
HspAI GCGC 3 cut(s) 335, 561, 603
KasI GGCGCC 1 cut(s) 602
KroI GCCGGC 2 cut(s) 118, 340
KroNI GCCGGC 2 cut(s) 120, 342
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 5 cut(s) 254, 329, 517, 580, 757
Lsp1109I GCAGC 1 cut(s) 870
MaeI CTAG 2 cut(s) 437, 813
MaeII ACGT 4 cut(s) 80, 197, 396, 820
MaeIII GTNAC 3 cut(s) 526, 536, 853
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 2 cut(s) 294, 413
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 104, 512, 668
MluCI AATT 1 cut(s) 727
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 3 cut(s) 72, 197, 251
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 189, 223, 442, 455, 523, 535, 562
MroNI GCCGGC 2 cut(s) 118, 340
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 2 cut(s) 431, 860
MspI CCGG 9 cut(s) 74, 119, 138, 155, 222, 341, 459, 480, 617
MspR9I CCNGG 5 cut(s) 74, 139, 183, 481, 792
MvaI CCWGG 2 cut(s) 183, 792
MvnI CGCG 2 cut(s) 335, 563
MwoI GCNNNNNNNGC 6 cut(s) 288, 341, 350, 569, 600, 883
NaeI GCCGGC 2 cut(s) 120, 342
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 3 cut(s) 74, 139, 481
NdeI CATATG 1 cut(s) 113
NdeII GATC 1 cut(s) 299
NgoMIV GCCGGC 2 cut(s) 118, 340
NlaIII CATG 3 cut(s) 61, 430, 627
NlaIV GGNNCC 6 cut(s) 331, 457, 509, 582, 604, 700
NmeAIII GCCGAG 2 cut(s) 472, 657
NmuCI GTSAC 3 cut(s) 526, 536, 853
NspI RCATGY 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PdiI GCCGGC 2 cut(s) 120, 342
PfeI GAWTC 1 cut(s) 168
PflMI CCANNNNNTGG 2 cut(s) 114, 216
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 8 cut(s) 334, 339, 585, 602, 868, 871, 885, 888
PleI GAGTC 3 cut(s) 71, 196, 251
PluTI GGCGCC 1 cut(s) 606
PpsI GAGTC 3 cut(s) 71, 196, 251
Ppu21I YACGTR 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 181, 790
PspGI CCWGG 2 cut(s) 181, 790
PspN4I GGNNCC 6 cut(s) 331, 457, 509, 582, 604, 700
PspPI GGNCC 2 cut(s) 219, 456
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 1 cut(s) 299
RigI GGCCGGCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 373, 590
RsaNI GTAC 2 cut(s) 372, 589
RseI CAYNNNNRTG 2 cut(s) 431, 860
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 8 cut(s) 333, 338, 584, 601, 867, 870, 884, 887
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 2 cut(s) 219, 456
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 3 cut(s) 72, 197, 251
ScrFI CCNGG 5 cut(s) 74, 139, 183, 481, 792
SduI GDGCHC 3 cut(s) 104, 512, 668
SfcI CTRYAG 1 cut(s) 595
SfoI GGCGCC 1 cut(s) 604
SinI GGWCC 2 cut(s) 219, 456
SmiMI CAYNNNNRTG 2 cut(s) 431, 860
SnaBI TACGTA 1 cut(s) 821
Sse9I AATT 1 cut(s) 727
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 2 cut(s) 437, 813
StyD4I CCNGG 5 cut(s) 72, 137, 181, 479, 790
TaaI ACNGT 3 cut(s) 371, 787, 859
TaiI ACGT 4 cut(s) 83, 200, 399, 823
TaqI TCGA 4 cut(s) 312, 408, 758, 776
TasI AATT 1 cut(s) 727
TatI WGTACW 1 cut(s) 588
TauI GCSGC 7 cut(s) 335, 340, 586, 603, 869, 872, 889
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 3 cut(s) 169, 769, 862
TseFI GTSAC 3 cut(s) 526, 536, 853
TseI GCWGC 1 cut(s) 883
Tsp45I GTSAC 3 cut(s) 526, 536, 853
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 3 cut(s) 169, 769, 862
Van91I CCANNNNNTGG 2 cut(s) 114, 216
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 219, 456
XceI RCATGY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 2 cut(s) 437, 813
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.