AT4G36010

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009846
Physical Location & Seq
Reverse (-)
17039063 .. 17041326
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36010.1

Sequence Viewer

Length: 906 bp
ATGGGTCAATCTCAAGTTTCTCTCTTTCTTCTTCTAATTCTTGTTTTCATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAGCTACACCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCTACAACCGGATTCTCCTTAAACCCTACCGAGACACGAGTTATCCCGATCCCCGCAGCTTGGTCCGGTCGTATTTGGGGTCGTACTCTCTGCACACAAGACGCAACCACCGGAAGATTCACTTGCATCACCGGGGACTGTGGTTCTTCCACCGTAGAATGCTCCGGATCCGGTGCTGCACCTCCGGCTACACTCGCTGAATTCACCTTAAACGGAGCTAATGGTCTCGATTTCTACGACGTCAGTCTCGTCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGTGGAGGAGATGCCGGAGGCGTCGCCGGAAACTGTACGACAACCGGCTGCGTTGCGGAGCTCAACGGTCCATGTCCTGCTCAGCTGAAAGTGGCGACGACGGGAGCTGAAGGAGTAGCTTGCAAAAGCGCGTGTGAAGCGTTTGGAACGCCGGAGTACTGCTGTAGCGGCGCGTTTGGAACGCCGGACACGTGTAAGCCAAGCGAGTACTCACAGTTTTTCAAAAACGCGTGCCCGAGAGCTTATAGTTACGCTTACGACGACGGAACTAGTACCTTCACTTGTGGCGGAGCTGATTACGTCATCACTTTCTGTCCTTCTCCTAACCCAAGTGTGAAGAGTGCAACGAAGGGAGTCCAACCCGTAGCTGTTAGCTACTCTAAGGCATCTCCAAACGCGTCGCCAACTCTTTCTGCCGTGTTTTCGATTGGCGTTTTGGCTGTCGCGTCTTGGGTGATGCAACGCGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

301

Amino Acids

30.91

Weight (kDa)

4.67

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 250 3.5e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 396
AccII CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 4 cut(s) 198, 488, 600, 720
AclWI GGATC 3 cut(s) 187, 306, 319
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 561
AcvI CACGTG 1 cut(s) 624
AcyI GRCGYC 3 cut(s) 126, 384, 453
AfaI GTAC 5 cut(s) 229, 469, 590, 641, 706
AfiI CCNNNNNNNGG 3 cut(s) 152, 204, 434
AflIII ACRYGT 5 cut(s) 621, 623, 660, 828, 895
AgsI TTSAA 1 cut(s) 655
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 3 cut(s) 170, 374, 395
AlwI GGATC 3 cut(s) 187, 306, 319
Ama87I CYCGRG 1 cut(s) 667
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 200, 320, 480
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 3 cut(s) 128, 563, 605
AspS9I GGNCC 2 cut(s) 207, 500
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 4 cut(s) 67, 265, 340, 898
AvaI CYCGRG 1 cut(s) 667
AvaII GGWCC 2 cut(s) 207, 500
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 668
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 495
BauI CACGAG 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 212, 307, 467
BccI CCATC 2 cut(s) 86, 428
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 170, 374, 395
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 595
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 4 cut(s) 201, 321, 481, 601
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 4 cut(s) 202, 322, 482, 602
BmcAI AGTACT 2 cut(s) 590, 641
Bme1390I CCNGG 2 cut(s) 111, 277
Bme18I GGWCC 2 cut(s) 207, 500
BmeT110I CYCGRG 1 cut(s) 667
BmgT120I GGNCC 2 cut(s) 207, 500
BmiI GGNNCC 3 cut(s) 127, 133, 313
BmrFI CCNGG 2 cut(s) 111, 277
BmsI GCATC 4 cut(s) 279, 433, 827, 879
BoxI GACNNNNGTC 2 cut(s) 387, 422
Bpu1102I GCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 277
BsaAI YACGTR 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 419
BsaHI GRCGYC 3 cut(s) 126, 384, 453
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 5 cut(s) 152, 209, 254, 308, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 204, 434
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 419
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 152, 204, 434
BseMII CTCAG 2 cut(s) 443, 527
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 3 cut(s) 212, 307, 467
BsgI GTGCAG 2 cut(s) 220, 306
Bsh1236I CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 667
BslFI GGGAC 2 cut(s) 293, 410
BslI CCNNNNNNNGG 3 cut(s) 152, 204, 434
BsmAI GTCTC 3 cut(s) 170, 374, 395
BsmFI GGGAC 2 cut(s) 293, 410
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 667
Bsp1286I GDGCHC 2 cut(s) 495, 668
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 2 cut(s) 192, 311
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 4 cut(s) 198, 488, 600, 720
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 442, 526
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
BspLI GGNNCC 3 cut(s) 127, 133, 313
BspPI GGATC 3 cut(s) 187, 306, 319
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 192, 311
BssNI GRCGYC 3 cut(s) 126, 384, 453
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 7 cut(s) 103, 284, 298, 401, 467, 500, 648
Bst6I CTCTTC 1 cut(s) 764
BstACI GRCGYC 3 cut(s) 126, 384, 453
BstBAI YACGTR 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 553, 664
BstDEI CTNAG 3 cut(s) 429, 513, 813
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 128, 563, 605
BstKTI GATC 2 cut(s) 195, 314
BstMAI GTCTC 3 cut(s) 170, 374, 395
BstMBI GATC 2 cut(s) 192, 311
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 329, 338, 569, 600
BstNI CCWGG 1 cut(s) 111
BstPAI GACNNNNGTC 2 cut(s) 387, 422
BstSCI CCNGG 2 cut(s) 109, 275
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
BstV1I GCAGC 3 cut(s) 212, 307, 467
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 553, 664
CfoI GCGC 3 cut(s) 128, 563, 605
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 207, 500
CseI GACGC 4 cut(s) 254, 442, 819, 867
Csp6I GTAC 5 cut(s) 228, 468, 589, 640, 705
CviAII CATG 1 cut(s) 504
CviQI GTAC 5 cut(s) 228, 468, 589, 640, 705
DdeI CTNAG 3 cut(s) 429, 513, 813
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 194, 313
DpnII GATC 2 cut(s) 192, 311
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
EciI GGCGGA 1 cut(s) 735
Ecl136II GAGCTC 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 2 cut(s) 207, 500
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 561
Eco72I CACGTG 1 cut(s) 624
Eco81I CCTNAGG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 495
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
FaeI CATG 1 cut(s) 507
FaiI YATR 3 cut(s) 54, 505, 678
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 2 cut(s) 293, 410
FatI CATG 1 cut(s) 503
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 201, 321, 481, 601
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 4 cut(s) 201, 321, 481, 601
FspBI CTAG 1 cut(s) 702
GlaI GCGC 3 cut(s) 127, 562, 604
GluI GCNGC 4 cut(s) 201, 321, 481, 601
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 109
HgaI GACGC 4 cut(s) 254, 442, 819, 867
HhaI GCGC 3 cut(s) 128, 563, 605
Hin1I GRCGYC 3 cut(s) 126, 384, 453
Hin1II CATG 1 cut(s) 507
Hin6I GCGC 3 cut(s) 126, 561, 603
HinP1I GCGC 3 cut(s) 126, 561, 603
HincII GTYRAC 2 cut(s) 85, 397
HindII GTYRAC 2 cut(s) 85, 397
HinfI GANTC 3 cut(s) 156, 261, 786
HpaI GTTAAC 1 cut(s) 85
HphI GGTGA 4 cut(s) 67, 265, 340, 898
Hpy166II GTNNAC 2 cut(s) 85, 397
Hpy188III TCNNGA 4 cut(s) 190, 309, 371, 412
Hpy8I GTNNAC 2 cut(s) 85, 397
Hpy99I CGWCG 9 cut(s) 386, 398, 401, 458, 532, 535, 695, 698, 835
HpyAV CCTTC 4 cut(s) 536, 718, 759, 775
HpyCH4III ACNGT 7 cut(s) 103, 284, 298, 401, 467, 500, 648
HpyCH4IV ACGT 3 cut(s) 384, 623, 732
HpyCH4V TGCA 6 cut(s) 237, 270, 323, 555, 776, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 338, 569, 600
HpyF3I CTNAG 3 cut(s) 429, 513, 813
HpySE526I ACGT 3 cut(s) 384, 623, 732
Hsp92I GRCGYC 3 cut(s) 126, 384, 453
Hsp92II CATG 1 cut(s) 507
HspAI GCGC 3 cut(s) 126, 561, 603
KasI GGCGCC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 308
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 192, 311
LmnI GCTCC 5 cut(s) 311, 359, 490, 536, 722
Lsp1109I GCAGC 3 cut(s) 212, 307, 467
LweI GCATC 4 cut(s) 279, 433, 827, 879
MaeI CTAG 1 cut(s) 702
MaeII ACGT 3 cut(s) 384, 623, 732
MaeIII GTNAC 2 cut(s) 401, 680
MalI GATC 2 cut(s) 194, 313
MboI GATC 2 cut(s) 192, 311
MboII GAAGA 5 cut(s) 20, 23, 270, 282, 781
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 495, 668
MluCI AATT 2 cut(s) 36, 344
MluI ACGCGT 3 cut(s) 660, 828, 895
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 795
MmeI TCCRAC 1 cut(s) 814
MnlI CCTC 6 cut(s) 73, 145, 336, 431, 438, 443
MroI TCCGGA 1 cut(s) 308
MseI TTAA 3 cut(s) 84, 164, 353
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 517
MspR9I CCNGG 2 cut(s) 111, 277
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 6 cut(s) 563, 605, 662, 830, 878, 897
MwoI GCNNNNNNNGC 4 cut(s) 329, 338, 569, 600
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 192, 311
NlaIII CATG 1 cut(s) 507
NlaIV GGNNCC 3 cut(s) 127, 133, 313
PcsI WCGNNNNNNNCGW 4 cut(s) 378, 390, 620, 690
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 156, 261
PkrI GCNGC 4 cut(s) 202, 322, 482, 602
PleI GAGTC 1 cut(s) 794
PluTI GGCGCC 1 cut(s) 129
PmaCI CACGTG 1 cut(s) 624
PmlI CACGTG 1 cut(s) 624
PpsI GAGTC 1 cut(s) 794
Ppu21I YACGTR 1 cut(s) 624
PshAI GACNNNNGTC 2 cut(s) 387, 422
Psp124BI GAGCTC 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 109
PspCI CACGTG 1 cut(s) 624
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 127, 133, 313
PspPI GGNCC 2 cut(s) 207, 500
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 5 cut(s) 229, 469, 590, 641, 706
RsaNI GTAC 5 cut(s) 228, 468, 589, 640, 705
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 495
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 84, 164, 353
SatI GCNGC 4 cut(s) 201, 321, 481, 601
Sau3AI GATC 2 cut(s) 192, 311
Sau96I GGNCC 2 cut(s) 207, 500
ScaI AGTACT 2 cut(s) 590, 641
SchI GAGTC 1 cut(s) 795
ScrFI CCNGG 2 cut(s) 111, 277
SduI GDGCHC 2 cut(s) 495, 668
SfaNI GCATC 4 cut(s) 279, 433, 827, 879
SfcI CTRYAG 1 cut(s) 595
SfoI GGCGCC 1 cut(s) 127
SgrDI CGTCGACG 1 cut(s) 395
SinI GGWCC 2 cut(s) 207, 500
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 2 cut(s) 36, 344
SsiI CCGC 4 cut(s) 198, 488, 600, 720
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 1 cut(s) 702
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 109, 275
TaaI ACNGT 7 cut(s) 103, 284, 298, 401, 467, 500, 648
TaiI ACGT 3 cut(s) 387, 626, 735
TaqI TCGA 3 cut(s) 372, 396, 857
TasI AATT 2 cut(s) 36, 344
TatI WGTACW 2 cut(s) 588, 639
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 2 cut(s) 156, 261
Tru1I TTAA 3 cut(s) 84, 164, 353
Tru9I TTAA 3 cut(s) 84, 164, 353
TscAI CASTG 1 cut(s) 95
TseI GCWGC 3 cut(s) 200, 320, 480
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 2 cut(s) 372, 711
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 207, 500
XapI RAATTY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 1 cut(s) 702
ZraI GACGTC 1 cut(s) 385
ZrmI AGTACT 2 cut(s) 590, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.