RLG00000016870

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009846
Physical Location & Seq
Reverse (-)
10835130 .. 10836600
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016870

Sequence Viewer

Length: 885 bp
ATGGCTTTCAGTCGATTTTCAAAGCTCGTAGTCTCTCTCTGTCTCATTCACTTCATTTCAGGTGGTTACTCGGCAACGTTTACTATTACAAACAAGTGCAGCAACACAATTTGGCCGGGCATTTTGTCAAACGCCGGGACGGCGCAGCTTTCTACTACCGGTTTTGCTTTACAATCCGGAGAGTCGAGCTCTATAGCCGTTCCGGCCTCGTGGTCGGGTAGGCTATGGGGGCGGACTCTGTGCTCTCAGGACCCGACCGCGGGAAAGTTCAGTTGCGTTACGGGAGATTGTGGCTCGGGTACTGTCGAGTGTGCCGGGGGTGGAGCTGCTCCTCCGGCAAGTCTGGCGGAGTTTACCCTGAACGGAGCGGACGGGCTGGACTTCTACGACGTCAGCCTCGTGGACGGATACAACCTCCCCATGTTGGTCGTGCCCCAGGGCGGGACCGGAGGCAACTGCACCACCACAGGCTGCGTCGTGGACCTCAACGCCGGGTGTCCGTCGGAGCTGAAGGTGACCACAGCGAGTGACGGTAGCGTGGCATGTAAAAGCGCGTGCGAGGCGTTTGGGGATCCCATGTACTGCTGCAGTGGGGCGTACGCGACCCCTGACACCTGCAAACCGAGCTCGTACTCTCAGTTCTTTAAAAATGCGTGCCCCAAAGCTTACAGCTACGCCTATGACGACGGCACCAGCACCTTCACTTGTGCCACCGCCGACTACCTCATCACTTTCTGCCCTGCCCCCGCCACCAGTGTGAAGTCGGCGAATGGCCAGATCCCTGTTGCGGCCGGCGTCTCAGCCGGTTCACGTCTTTCGATACCGAACGTCATCGTTTTCACCACCGTCTTGTCGGCAGTTTGGCTGTTGCTGCCGCTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

295

Amino Acids

30.08

Weight (kDa)

4.73

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 1.7e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17860 AT4G36010 AT4G36010
fragaria_vesca FvH4_1g11720 FvH4_1g11720
malus_domestica MD02G1130400.v1.1 MD15G1244300.v1.1
prunus_persica Prupe.7G169400_v2.0.a1
pyrus_communis pycom02g10210 pycom02g10230
rosa_chinensis RchiOBHm_Chr2g0099311
rosa_laevigata RLG00000016870
rosa_multiflora Rmu_sc0009774.1_g000011 Rmu_sc0009774.1_g000013
rosa_roxburghii Rroxscaffold_2G00143220
rosa_rugosa Rorug02G0078600
rosa_samantha Rh2AG128000 Rh2BG130900 Rh2CG132100 Rh2DG132600
rosa_wichuraiana Rw2G009880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 368
AccII CGCG 3 cut(s) 260, 554, 602
AccIII TCCGGA 1 cut(s) 176
AclI AACGTT 1 cut(s) 77
AclWI GGATC 3 cut(s) 566, 579, 772
AcoI YGGCCR 3 cut(s) 113, 772, 789
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 2 cut(s) 390, 795
AfaI GTAC 4 cut(s) 301, 581, 599, 632
AfiI CCNNNNNNNGG 6 cut(s) 259, 260, 424, 440, 441, 787
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 21
AjiI CACGTC 1 cut(s) 812
AjnI CCWGG 1 cut(s) 435
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 8 cut(s) 25, 148, 189, 326, 508, 627, 665, 672
AluI AGCT 8 cut(s) 25, 148, 189, 326, 508, 627, 665, 672
Alw21I GWGCWC 3 cut(s) 191, 245, 629
Alw26I GTCTC 3 cut(s) 37, 47, 802
AlwI GGATC 3 cut(s) 566, 579, 772
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 4 cut(s) 113, 204, 772, 789
ApeKI GCWGC 6 cut(s) 99, 145, 326, 471, 585, 871
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 2 cut(s) 145, 554
AspS9I GGNCC 3 cut(s) 250, 444, 481
AsuC2I CCSGG 4 cut(s) 117, 136, 316, 493
AsuHPI GGTGA 2 cut(s) 526, 832
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 3 cut(s) 250, 444, 481
BaeGI GKGCMC 2 cut(s) 435, 659
BalI TGGCCA 1 cut(s) 774
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 689
BanII GRGCYC 2 cut(s) 191, 629
BauI CACGAG 2 cut(s) 208, 398
Bbv12I GWGCWC 3 cut(s) 191, 245, 629
BbvI GCAGC 6 cut(s) 111, 157, 313, 458, 572, 858
BceAI ACGGC 3 cut(s) 156, 182, 703
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 4 cut(s) 117, 136, 316, 493
BcoDI GTCTC 3 cut(s) 37, 47, 802
BfmI CTRYAG 2 cut(s) 192, 586
BfuAI ACCTGC 1 cut(s) 623
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 2 cut(s) 140, 203
BisI GCNGC 8 cut(s) 100, 146, 327, 472, 586, 789, 872, 875
BlsI GCNGC 8 cut(s) 101, 147, 328, 473, 587, 790, 873, 876
Bme1390I CCNGG 5 cut(s) 117, 136, 316, 437, 493
Bme18I GGWCC 3 cut(s) 250, 444, 481
BmeT110I CYCGRG 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 812
BmgT120I GGNCC 3 cut(s) 250, 444, 481
BmiI GGNNCC 4 cut(s) 252, 445, 573, 691
BmrFI CCNGG 5 cut(s) 117, 136, 316, 437, 493
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 4 cut(s) 117, 136, 316, 493
BsaHI GRCGYC 2 cut(s) 390, 795
BsaJI CCNNGG 4 cut(s) 258, 315, 435, 436
BsaWI WCCGGW 3 cut(s) 158, 176, 446
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 260, 424, 440, 441, 787
Bse118I RCCGGY 3 cut(s) 158, 791, 803
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 258, 315, 435, 436
BseLI CCNNNNNNNGG 6 cut(s) 259, 260, 424, 440, 441, 787
BseMII CTCAG 3 cut(s) 260, 650, 813
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 2 cut(s) 435, 659
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 6 cut(s) 111, 157, 313, 458, 572, 858
BsgI GTGCAG 2 cut(s) 118, 442
Bsh1236I CGCG 3 cut(s) 260, 554, 602
Bsh1285I CGRYCG 2 cut(s) 258, 792
BshFI GGCC 4 cut(s) 115, 206, 774, 791
BshNI GGYRCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 158
BsiEI CGRYCG 2 cut(s) 258, 792
BsiHKAI GWGCWC 3 cut(s) 191, 245, 629
BsiHKCI CYCGRG 1 cut(s) 295
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 2 cut(s) 151, 457
BslI CCNNNNNNNGG 6 cut(s) 259, 260, 424, 440, 441, 787
BsmAI GTCTC 3 cut(s) 37, 47, 802
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 2 cut(s) 151, 457
BsnI GGCC 4 cut(s) 115, 206, 774, 791
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 5 cut(s) 191, 245, 435, 629, 659
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 2 cut(s) 571, 777
BspANI GGCC 4 cut(s) 115, 206, 774, 791
BspCNI CTCAG 3 cut(s) 259, 649, 812
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 3 cut(s) 260, 554, 602
BspLI GGNNCC 4 cut(s) 252, 445, 573, 691
BspMAI CTGCAG 1 cut(s) 590
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 3 cut(s) 566, 579, 772
BspT107I GGYRCC 1 cut(s) 689
BsrBI CCGCTC 1 cut(s) 368
BsrFI RCCGGY 3 cut(s) 158, 791, 803
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 3 cut(s) 158, 791, 803
BssECI CCNNGG 4 cut(s) 258, 315, 435, 436
BssMI GATC 2 cut(s) 571, 777
BssNI GRCGYC 2 cut(s) 390, 795
BssSI CACGAG 2 cut(s) 208, 398
Bst2BI CACGAG 2 cut(s) 208, 398
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 304, 533, 847
BstACI GRCGYC 2 cut(s) 390, 795
BstC8I GCNNGC 3 cut(s) 556, 655, 793
BstDEI CTNAG 3 cut(s) 246, 636, 799
BstDSI CCRYGG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 514
BstFNI CGCG 3 cut(s) 260, 554, 602
BstHHI GCGC 2 cut(s) 145, 554
BstKTI GATC 2 cut(s) 574, 780
BstMAI GTCTC 3 cut(s) 37, 47, 802
BstMBI GATC 2 cut(s) 571, 777
BstMCI CGRYCG 2 cut(s) 258, 792
BstMWI GCNNNNNNNGC 8 cut(s) 140, 203, 229, 335, 344, 560, 624, 871
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 546
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 5 cut(s) 115, 134, 314, 435, 491
BstSFI CTRYAG 2 cut(s) 192, 586
BstSLI GKGCMC 2 cut(s) 435, 659
BstUI CGCG 3 cut(s) 260, 554, 602
BstV1I GCAGC 6 cut(s) 111, 157, 313, 458, 572, 858
BstX2I RGATCY 2 cut(s) 571, 777
BstYI RGATCY 2 cut(s) 571, 777
BstZI CGGCCG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 4 cut(s) 115, 206, 774, 791
BtgI CCRYGG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 812
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 595, 760
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 556, 655, 793
CfoI GCGC 2 cut(s) 145, 554
Cfr10I RCCGGY 3 cut(s) 158, 791, 803
Cfr13I GGNCC 3 cut(s) 250, 444, 481
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 2 cut(s) 463, 784
Csp6I GTAC 4 cut(s) 300, 580, 598, 631
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 3 cut(s) 421, 543, 577
CviQI GTAC 4 cut(s) 300, 580, 598, 631
DdeI CTNAG 3 cut(s) 246, 636, 799
DpnI GATC 2 cut(s) 573, 779
DpnII GATC 2 cut(s) 571, 777
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 3 cut(s) 113, 772, 789
EagI CGGCCG 1 cut(s) 789
EciI GGCGGA 2 cut(s) 247, 362
Ecl136II GAGCTC 2 cut(s) 189, 627
EclXI CGGCCG 1 cut(s) 789
Eco24I GRGCYC 2 cut(s) 191, 629
Eco47I GGWCC 3 cut(s) 250, 444, 481
Eco52I CGGCCG 1 cut(s) 789
Eco53kI GAGCTC 2 cut(s) 189, 627
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 514
EcoICRI GAGCTC 2 cut(s) 189, 627
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 435
EcoT38I GRGCYC 2 cut(s) 191, 629
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 3 cut(s) 424, 546, 580
FaiI YATR 6 cut(s) 194, 226, 422, 544, 578, 681
FaqI GGGAC 2 cut(s) 151, 457
FatI CATG 3 cut(s) 420, 542, 576
FauI CCCGC 3 cut(s) 253, 434, 754
Fnu4HI GCNGC 8 cut(s) 100, 146, 327, 472, 586, 789, 872, 875
FriOI GRGCYC 2 cut(s) 191, 629
Fsp4HI GCNGC 8 cut(s) 100, 146, 327, 472, 586, 789, 872, 875
GlaI GCGC 2 cut(s) 144, 553
GluI GCNGC 8 cut(s) 100, 146, 327, 472, 586, 789, 872, 875
HaeIII GGCC 4 cut(s) 115, 206, 774, 791
HgaI GACGC 2 cut(s) 463, 784
HhaI GCGC 2 cut(s) 145, 554
Hin1I GRCGYC 2 cut(s) 390, 795
Hin1II CATG 3 cut(s) 424, 546, 580
Hin6I GCGC 2 cut(s) 143, 552
HinP1I GCGC 2 cut(s) 143, 552
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 2 cut(s) 182, 235
HphI GGTGA 2 cut(s) 526, 832
Hpy166II GTNNAC 5 cut(s) 81, 354, 403, 481, 809
Hpy188I TCNGA 2 cut(s) 505, 884
Hpy188III TCNNGA 2 cut(s) 177, 248
Hpy8I GTNNAC 5 cut(s) 81, 354, 403, 481, 809
Hpy99I CGWCG 4 cut(s) 392, 479, 505, 689
HpyAV CCTTC 2 cut(s) 505, 709
HpyCH4III ACNGT 3 cut(s) 304, 533, 847
HpyCH4IV ACGT 4 cut(s) 77, 390, 811, 828
HpyCH4V TGCA 4 cut(s) 99, 459, 588, 618
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 203, 229, 335, 344, 560, 624, 871
HpyF3I CTNAG 3 cut(s) 246, 636, 799
HpySE526I ACGT 4 cut(s) 77, 390, 811, 828
Hsp92I GRCGYC 2 cut(s) 390, 795
Hsp92II CATG 3 cut(s) 424, 546, 580
HspAI GCGC 2 cut(s) 143, 552
Kpn2I TCCGGA 1 cut(s) 176
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 571, 777
LmnI GCTCC 4 cut(s) 323, 334, 365, 505
Lsp1109I GCAGC 6 cut(s) 111, 157, 313, 458, 572, 858
MaeII ACGT 4 cut(s) 77, 390, 811, 828
MaeIII GTNAC 4 cut(s) 65, 277, 514, 527
MalI GATC 2 cut(s) 573, 779
MbiI CCGCTC 1 cut(s) 368
MboI GATC 2 cut(s) 571, 777
MflI RGATCY 2 cut(s) 571, 777
MhlI GDGCHC 5 cut(s) 191, 245, 435, 629, 659
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 191, 229
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 8 cut(s) 217, 342, 407, 425, 443, 494, 553, 734
Mox20I TGGCCA 1 cut(s) 774
MroI TCCGGA 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 791
MscI TGGCCA 1 cut(s) 774
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 5 cut(s) 117, 136, 316, 437, 493
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 3 cut(s) 260, 554, 602
MwoI GCNNNNNNNGC 8 cut(s) 140, 203, 229, 335, 344, 560, 624, 871
NaeI GCCGGC 1 cut(s) 793
NciI CCSGG 4 cut(s) 117, 136, 316, 493
NdeII GATC 2 cut(s) 571, 777
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 3 cut(s) 424, 546, 580
NlaIV GGNNCC 4 cut(s) 252, 445, 573, 691
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 514, 527
NspI RCATGY 1 cut(s) 546
OliI CACNNNNGTG 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 623
PasI CCCWGGG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 681
PdiI GCCGGC 1 cut(s) 793
Pfl23II CGTACG 1 cut(s) 597
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 8 cut(s) 101, 147, 328, 473, 587, 790, 873, 876
PleI GAGTC 2 cut(s) 190, 229
PpsI GAGTC 2 cut(s) 190, 229
PpuMI RGGWCCY 1 cut(s) 250
Psp124BI GAGCTC 2 cut(s) 191, 629
Psp1406I AACGTT 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 435
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 4 cut(s) 252, 445, 573, 691
PspPI GGNCC 3 cut(s) 250, 444, 481
PspPPI RGGWCCY 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PstI CTGCAG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 571, 777
RsaI GTAC 4 cut(s) 301, 581, 599, 632
RsaNI GTAC 4 cut(s) 300, 580, 598, 631
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 2 cut(s) 191, 629
SacII CCGCGG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 8 cut(s) 100, 146, 327, 472, 586, 789, 872, 875
Sau3AI GATC 2 cut(s) 571, 777
Sau96I GGNCC 3 cut(s) 250, 444, 481
SchI GAGTC 2 cut(s) 191, 229
ScrFI CCNGG 5 cut(s) 117, 136, 316, 437, 493
SduI GDGCHC 5 cut(s) 191, 245, 435, 629, 659
SfcI CTRYAG 2 cut(s) 192, 586
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 3 cut(s) 250, 444, 481
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 1 cut(s) 108
SstI GAGCTC 2 cut(s) 191, 629
StyD4I CCNGG 5 cut(s) 115, 134, 314, 435, 491
TaaI ACNGT 3 cut(s) 304, 533, 847
TaiI ACGT 4 cut(s) 80, 393, 814, 831
TaqI TCGA 4 cut(s) 13, 185, 306, 818
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 791, 877
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 595, 760
TseFI GTSAC 2 cut(s) 514, 527
TseI GCWGC 6 cut(s) 99, 145, 326, 471, 585, 871
Tsp45I GTSAC 2 cut(s) 514, 527
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 3 cut(s) 378, 420, 489
TspRI CASTG 2 cut(s) 595, 760
VpaK11BI GGWCC 3 cut(s) 250, 444, 481
XceI RCATGY 1 cut(s) 546
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.