Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

7920440 .. 7922593

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18196.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTTTCGGCTCCTTCATATCTACCATCACTTACTGTTTGTTCTTTCGCTATCCACATAAGAAGCCAAAGTTCAAAAGTGTGAGCCACCTCAACCATTACCACACCATGCCAATGGCTCGTCCACTTTCTTTACAGACGATAGACCTGAAAGTAAGGATGTGTTGCAGTGGATGTGAGAGGGTTGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCTAGAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGTGAGAAGAGCCGGTAAACGAGCCGAGTTCTGGCCCTACCCGGACATGCCTCGCTACTTCACTTCCTCTGACCATTACTTCAAAGATACCACCCGCGAGTTTAGGGAGAGCTACAACTACTATCGCCATGGCTACAACCTTAGTGACCGTCACGGTAACATTCACGTCACCAACCGTGGTGACGACAAAATGAGCAACTTTTTCAACGACGACAACGTCCACGCATGTAGCCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

178

Amino Acids

21.07

Weight (kDa)

9.51

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 52	3.7e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AccII	CGCG	1 cut(s)	393
AciI	CCGC	2 cut(s)	296, 391
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	244, 327
AgsI	TTSAA	3 cut(s)	76, 379, 502
AjiI	CACGTC	1 cut(s)	463
AluBI	AGCT	2 cut(s)	208, 408
AluI	AGCT	2 cut(s)	208, 408
Alw21I	GWGCWC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	244, 310, 457, 488
Bbv12I	GWGCWC	1 cut(s)	291
BccI	CCATC	2 cut(s)	35, 238
BcnI	CCSGG	1 cut(s)	338
BfaI	CTAG	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	424, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 327
Bse118I	RCCGGY	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	424, 472
BseGI	GGATG	2 cut(s)	165, 179
BseLI	CCNNNNNNNGG	2 cut(s)	244, 327
BseMII	CTCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	309, 338
BslI	CCNNNNNNNGG	2 cut(s)	244, 327
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	2 cut(s)	296, 391
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	424, 472
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	5 cut(s)	38, 259, 446, 452, 473
Bst6I	CTCTTC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	209, 437
BstDSI	CCRYGG	2 cut(s)	424, 472
BstF5I	GGATG	2 cut(s)	165, 179
BstFNI	CGCG	1 cut(s)	393
BstNSI	RCATGY	3 cut(s)	197, 346, 525
BstSCI	CCNGG	1 cut(s)	336
BstSNI	TACGTA	1 cut(s)	271
BstUI	CGCG	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	2 cut(s)	424, 472
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	165, 179
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	5 cut(s)	109, 194, 343, 425, 522
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	209, 437
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco105I	TACGTA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	5 cut(s)	112, 197, 346, 428, 525
FaiI	YATR	8 cut(s)	20, 60, 110, 195, 344, 426, 523, 533
FatI	CATG	5 cut(s)	108, 193, 342, 424, 521
FauI	CCCGC	1 cut(s)	398
FokI	GGATG	2 cut(s)	172, 186
FspBI	CTAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	309, 338
Hin1II	CATG	5 cut(s)	112, 197, 346, 428, 525
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	2 cut(s)	309, 338
HphI	GGTGA	4 cut(s)	244, 310, 457, 488
Hpy166II	GTNNAC	5 cut(s)	125, 220, 235, 314, 517
Hpy188I	TCNGA	1 cut(s)	367
Hpy8I	GTNNAC	5 cut(s)	125, 220, 235, 314, 517
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	25, 277
HpyCH4III	ACNGT	5 cut(s)	38, 259, 446, 452, 473
HpyCH4IV	ACGT	3 cut(s)	270, 462, 513
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	209, 437
HpySE526I	ACGT	3 cut(s)	270, 462, 513
Hsp92II	CATG	5 cut(s)	112, 197, 346, 428, 525
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	161, 313, 322, 351
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	3 cut(s)	270, 462, 513
MaeIII	GTNAC	6 cut(s)	253, 440, 446, 452, 463, 476
MboII	GAAGA	2 cut(s)	292, 315
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	101, 174, 206, 223, 270, 357, 373
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	2 cut(s)	309, 338
MspR9I	CCNGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	393
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	424
NlaIII	CATG	5 cut(s)	112, 197, 346, 428, 525
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	4 cut(s)	440, 446, 463, 476
NspI	RCATGY	3 cut(s)	197, 346, 525
PaeI	GCATGC	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PflFI	GACNNNGTC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	330
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SnaBI	TACGTA	1 cut(s)	271
SphI	GCATGC	1 cut(s)	197
SsiI	CCGC	2 cut(s)	296, 391
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	5 cut(s)	38, 259, 446, 452, 473
TaiI	ACGT	3 cut(s)	273, 465, 516
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	4 cut(s)	440, 446, 463, 476
Tsp45I	GTSAC	4 cut(s)	440, 446, 463, 476
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	512
XceI	RCATGY	3 cut(s)	197, 346, 525
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.